data_4E5L # _model_server_result.job_id gBdIbld7g8hOajvq77MaPw _model_server_result.datetime_utc '2024-10-18 14:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":304}' # _entry.id 4E5L # _exptl.entry_id 4E5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E5L _cell.length_a 126.475 _cell.length_b 133.493 _cell.length_c 126.4 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,Y 1 1 B,J,K,L,M,N,Z 2 1 C,O,P,Q,R,S,AA 3 1 D,T,U,V,W,X,BA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 L N N ? 3 M N N ? 3 Q N N ? 3 R N N ? 3 V N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 A OD1 ASP 89 A ASP 108 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc4 A OE1 GLU 100 A GLU 119 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc5 A O ILE 101 A ILE 120 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 E MN MN . A MN 301 1_555 I O3 DBH . A DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc7 E MN MN . A MN 301 1_555 I O17 DBH . A DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc8 E MN MN . A MN 301 1_555 Y O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 F MN MN . A MN 302 1_555 I O6 DBH . A DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc10 F MN MN . A MN 302 1_555 I O3 DBH . A DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc11 B NE2 HIS 41 B HIS 41 1_555 K MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 B OE1 GLU 61 B GLU 80 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc13 B OD1 ASP 89 B ASP 108 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc14 B OD2 ASP 89 B ASP 108 1_555 K MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 B OE1 GLU 100 B GLU 119 1_555 K MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc16 B O ILE 101 B ILE 120 1_555 K MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc17 J MN MN . B MN 301 1_555 N O17 DBH . B DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc18 J MN MN . B MN 301 1_555 N O3 DBH . B DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc19 J MN MN . B MN 301 1_555 Z O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc20 K MN MN . B MN 302 1_555 N O3 DBH . B DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc21 K MN MN . B MN 302 1_555 N O6 DBH . B DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc22 C NE2 HIS 41 C HIS 41 1_555 O MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc23 C OE1 GLU 61 C GLU 80 1_555 P MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc24 C OD2 ASP 89 C ASP 108 1_555 O MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc25 C OD1 ASP 89 C ASP 108 1_555 P MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc26 C OE1 GLU 100 C GLU 119 1_555 O MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc27 C O ILE 101 C ILE 120 1_555 O MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc28 O MN MN . C MN 301 1_555 S O3 DBH . C DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc29 O MN MN . C MN 301 1_555 S O6 DBH . C DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc30 P MN MN . C MN 302 1_555 S O3 DBH . C DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc31 P MN MN . C MN 302 1_555 S O9 DBH . C DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc32 P MN MN . C MN 302 1_555 AA O HOH . C HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc33 D NE2 HIS 41 D HIS 41 1_555 T MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc34 D OD2 ASP 89 D ASP 108 1_555 T MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc35 D OD1 ASP 89 D ASP 108 1_555 U MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc36 D OE1 GLU 100 D GLU 119 1_555 T MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc37 D O ILE 101 D ILE 120 1_555 T MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc38 T MN MN . D MN 301 1_555 X O3 DBH . D DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc39 T MN MN . D MN 301 1_555 X O6 DBH . D DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc40 U MN MN . D MN 302 1_555 X O9 DBH . D DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc41 U MN MN . D MN 302 1_555 X O3 DBH . D DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc42 U MN MN . D MN 302 1_555 BA O HOH . D HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 307 n n S O2 SO4 doub 308 n n S O3 SO4 sing 309 n n S O4 SO4 sing 310 n n # _atom_sites.entry_id 4E5L _atom_sites.fract_transf_matrix[1][1] 0.007907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 301 7 MN MN . F 2 MN A 1 302 8 MN MN . G 3 SO4 A 1 303 3 SO4 SO4 . H 3 SO4 A 1 304 6 SO4 SO4 . I 4 DBH A 1 305 2 DBH DHA . J 2 MN B 1 301 3 MN MN . K 2 MN B 1 302 4 MN MN . L 3 SO4 B 1 303 1 SO4 SO4 . M 3 SO4 B 1 304 8 SO4 SO4 . N 4 DBH B 1 305 1 DBH DHA . O 2 MN C 1 301 5 MN MN . P 2 MN C 1 302 6 MN MN . Q 3 SO4 C 1 303 2 SO4 SO4 . R 3 SO4 C 1 304 5 SO4 SO4 . S 4 DBH C 1 305 4 DBH DHA . T 2 MN D 1 301 1 MN MN . U 2 MN D 1 302 2 MN MN . V 3 SO4 D 1 303 4 SO4 SO4 . W 3 SO4 D 1 304 7 SO4 SO4 . X 4 DBH D 1 305 3 DBH DHA . Y 5 HOH A 1 401 7 HOH HOH . Y 5 HOH A 2 402 8 HOH HOH . Y 5 HOH A 3 403 11 HOH HOH . Y 5 HOH A 4 404 16 HOH HOH . Y 5 HOH A 5 405 21 HOH HOH . Y 5 HOH A 6 406 26 HOH HOH . Y 5 HOH A 7 407 28 HOH HOH . Y 5 HOH A 8 408 29 HOH HOH . Y 5 HOH A 9 409 31 HOH HOH . Y 5 HOH A 10 410 33 HOH HOH . Y 5 HOH A 11 411 41 HOH HOH . Y 5 HOH A 12 412 42 HOH HOH . Y 5 HOH A 13 413 44 HOH HOH . Y 5 HOH A 14 414 53 HOH HOH . Z 5 HOH B 1 401 3 HOH HOH . Z 5 HOH B 2 402 4 HOH HOH . Z 5 HOH B 3 403 9 HOH HOH . Z 5 HOH B 4 404 14 HOH HOH . Z 5 HOH B 5 405 18 HOH HOH . Z 5 HOH B 6 406 22 HOH HOH . Z 5 HOH B 7 407 27 HOH HOH . Z 5 HOH B 8 408 35 HOH HOH . Z 5 HOH B 9 409 46 HOH HOH . Z 5 HOH B 10 410 49 HOH HOH . Z 5 HOH B 11 411 51 HOH HOH . Z 5 HOH B 12 412 55 HOH HOH . AA 5 HOH C 1 401 5 HOH HOH . AA 5 HOH C 2 402 6 HOH HOH . AA 5 HOH C 3 403 10 HOH HOH . AA 5 HOH C 4 404 15 HOH HOH . AA 5 HOH C 5 405 17 HOH HOH . AA 5 HOH C 6 406 20 HOH HOH . AA 5 HOH C 7 407 23 HOH HOH . AA 5 HOH C 8 408 24 HOH HOH . AA 5 HOH C 9 409 30 HOH HOH . AA 5 HOH C 10 410 32 HOH HOH . AA 5 HOH C 11 411 34 HOH HOH . AA 5 HOH C 12 412 38 HOH HOH . AA 5 HOH C 13 413 40 HOH HOH . AA 5 HOH C 14 414 47 HOH HOH . AA 5 HOH C 15 415 50 HOH HOH . AA 5 HOH C 16 416 52 HOH HOH . BA 5 HOH D 1 401 1 HOH HOH . BA 5 HOH D 2 402 2 HOH HOH . BA 5 HOH D 3 403 12 HOH HOH . BA 5 HOH D 4 404 13 HOH HOH . BA 5 HOH D 5 405 19 HOH HOH . BA 5 HOH D 6 406 25 HOH HOH . BA 5 HOH D 7 407 36 HOH HOH . BA 5 HOH D 8 408 37 HOH HOH . BA 5 HOH D 9 409 39 HOH HOH . BA 5 HOH D 10 410 43 HOH HOH . BA 5 HOH D 11 411 45 HOH HOH . BA 5 HOH D 12 412 48 HOH HOH . BA 5 HOH D 13 413 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . M 3 -38.321 -29.926 -5.813 1 79.16 ? S SO4 304 B 1 HETATM 2 O O1 SO4 . . . M 3 -37.429 -30.82 -6.568 1 77.2 ? O1 SO4 304 B 1 HETATM 3 O O2 SO4 . . . M 3 -38.409 -28.647 -6.504 1 78.21 ? O2 SO4 304 B 1 HETATM 4 O O3 SO4 . . . M 3 -39.671 -30.48 -5.679 1 78.4 ? O3 SO4 304 B 1 HETATM 5 O O4 SO4 . . . M 3 -37.81 -29.698 -4.463 1 78.87 ? O4 SO4 304 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #