data_4E5L # _model_server_result.job_id E8JF_kLOmt2s6QGAURzWdg _model_server_result.datetime_utc '2024-11-24 14:12:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":305}' # _entry.id 4E5L # _exptl.entry_id 4E5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-DIHYDROXY-BENZOIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E5L _cell.length_a 126.475 _cell.length_b 133.493 _cell.length_c 126.4 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,Y 1 1 B,J,K,L,M,N,Z 2 1 C,O,P,Q,R,S,AA 3 1 D,T,U,V,W,X,BA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 N N N ? 4 S N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 A OD1 ASP 89 A ASP 108 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc4 A OE1 GLU 100 A GLU 119 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc5 A O ILE 101 A ILE 120 1_555 F MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 E MN MN . A MN 301 1_555 I O3 DBH . A DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc7 E MN MN . A MN 301 1_555 I O17 DBH . A DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc8 E MN MN . A MN 301 1_555 Y O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 F MN MN . A MN 302 1_555 I O6 DBH . A DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc10 F MN MN . A MN 302 1_555 I O3 DBH . A DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc11 B NE2 HIS 41 B HIS 41 1_555 K MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 B OE1 GLU 61 B GLU 80 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc13 B OD1 ASP 89 B ASP 108 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc14 B OD2 ASP 89 B ASP 108 1_555 K MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 B OE1 GLU 100 B GLU 119 1_555 K MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc16 B O ILE 101 B ILE 120 1_555 K MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc17 J MN MN . B MN 301 1_555 N O17 DBH . B DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc18 J MN MN . B MN 301 1_555 N O3 DBH . B DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc19 J MN MN . B MN 301 1_555 Z O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc20 K MN MN . B MN 302 1_555 N O3 DBH . B DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc21 K MN MN . B MN 302 1_555 N O6 DBH . B DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc22 C NE2 HIS 41 C HIS 41 1_555 O MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc23 C OE1 GLU 61 C GLU 80 1_555 P MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc24 C OD2 ASP 89 C ASP 108 1_555 O MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc25 C OD1 ASP 89 C ASP 108 1_555 P MN MN . C MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc26 C OE1 GLU 100 C GLU 119 1_555 O MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc27 C O ILE 101 C ILE 120 1_555 O MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc28 O MN MN . C MN 301 1_555 S O3 DBH . C DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc29 O MN MN . C MN 301 1_555 S O6 DBH . C DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc30 P MN MN . C MN 302 1_555 S O3 DBH . C DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc31 P MN MN . C MN 302 1_555 S O9 DBH . C DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc32 P MN MN . C MN 302 1_555 AA O HOH . C HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc33 D NE2 HIS 41 D HIS 41 1_555 T MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc34 D OD2 ASP 89 D ASP 108 1_555 T MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc35 D OD1 ASP 89 D ASP 108 1_555 U MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc36 D OE1 GLU 100 D GLU 119 1_555 T MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc37 D O ILE 101 D ILE 120 1_555 T MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc38 T MN MN . D MN 301 1_555 X O3 DBH . D DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc39 T MN MN . D MN 301 1_555 X O6 DBH . D DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc40 U MN MN . D MN 302 1_555 X O9 DBH . D DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc41 U MN MN . D MN 302 1_555 X O3 DBH . D DBH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc42 U MN MN . D MN 302 1_555 BA O HOH . D HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? # _chem_comp.formula 'C7 H6 O4' _chem_comp.formula_weight 154.12 _chem_comp.id DBH _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-DIHYDROXY-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 C21 DBH sing 83 n n O17 HO17 DBH sing 84 n n C21 O9 DBH doub 85 n n C21 C18 DBH sing 86 n n C18 C15 DBH doub 87 n y C18 C3 DBH sing 88 n y C15 C12 DBH sing 89 n y C15 HC15 DBH sing 90 n n C12 C9 DBH doub 91 n y C12 HC12 DBH sing 92 n n C3 O3 DBH sing 93 n n C3 C6 DBH doub 94 n y O3 HO3 DBH sing 95 n n C6 C9 DBH sing 96 n y C6 O6 DBH sing 97 n n C9 HC9 DBH sing 98 n n O6 HO6 DBH sing 99 n n # _atom_sites.entry_id 4E5L _atom_sites.fract_transf_matrix[1][1] 0.007907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 301 7 MN MN . F 2 MN A 1 302 8 MN MN . G 3 SO4 A 1 303 3 SO4 SO4 . H 3 SO4 A 1 304 6 SO4 SO4 . I 4 DBH A 1 305 2 DBH DHA . J 2 MN B 1 301 3 MN MN . K 2 MN B 1 302 4 MN MN . L 3 SO4 B 1 303 1 SO4 SO4 . M 3 SO4 B 1 304 8 SO4 SO4 . N 4 DBH B 1 305 1 DBH DHA . O 2 MN C 1 301 5 MN MN . P 2 MN C 1 302 6 MN MN . Q 3 SO4 C 1 303 2 SO4 SO4 . R 3 SO4 C 1 304 5 SO4 SO4 . S 4 DBH C 1 305 4 DBH DHA . T 2 MN D 1 301 1 MN MN . U 2 MN D 1 302 2 MN MN . V 3 SO4 D 1 303 4 SO4 SO4 . W 3 SO4 D 1 304 7 SO4 SO4 . X 4 DBH D 1 305 3 DBH DHA . Y 5 HOH A 1 401 7 HOH HOH . Y 5 HOH A 2 402 8 HOH HOH . Y 5 HOH A 3 403 11 HOH HOH . Y 5 HOH A 4 404 16 HOH HOH . Y 5 HOH A 5 405 21 HOH HOH . Y 5 HOH A 6 406 26 HOH HOH . Y 5 HOH A 7 407 28 HOH HOH . Y 5 HOH A 8 408 29 HOH HOH . Y 5 HOH A 9 409 31 HOH HOH . Y 5 HOH A 10 410 33 HOH HOH . Y 5 HOH A 11 411 41 HOH HOH . Y 5 HOH A 12 412 42 HOH HOH . Y 5 HOH A 13 413 44 HOH HOH . Y 5 HOH A 14 414 53 HOH HOH . Z 5 HOH B 1 401 3 HOH HOH . Z 5 HOH B 2 402 4 HOH HOH . Z 5 HOH B 3 403 9 HOH HOH . Z 5 HOH B 4 404 14 HOH HOH . Z 5 HOH B 5 405 18 HOH HOH . Z 5 HOH B 6 406 22 HOH HOH . Z 5 HOH B 7 407 27 HOH HOH . Z 5 HOH B 8 408 35 HOH HOH . Z 5 HOH B 9 409 46 HOH HOH . Z 5 HOH B 10 410 49 HOH HOH . Z 5 HOH B 11 411 51 HOH HOH . Z 5 HOH B 12 412 55 HOH HOH . AA 5 HOH C 1 401 5 HOH HOH . AA 5 HOH C 2 402 6 HOH HOH . AA 5 HOH C 3 403 10 HOH HOH . AA 5 HOH C 4 404 15 HOH HOH . AA 5 HOH C 5 405 17 HOH HOH . AA 5 HOH C 6 406 20 HOH HOH . AA 5 HOH C 7 407 23 HOH HOH . AA 5 HOH C 8 408 24 HOH HOH . AA 5 HOH C 9 409 30 HOH HOH . AA 5 HOH C 10 410 32 HOH HOH . AA 5 HOH C 11 411 34 HOH HOH . AA 5 HOH C 12 412 38 HOH HOH . AA 5 HOH C 13 413 40 HOH HOH . AA 5 HOH C 14 414 47 HOH HOH . AA 5 HOH C 15 415 50 HOH HOH . AA 5 HOH C 16 416 52 HOH HOH . BA 5 HOH D 1 401 1 HOH HOH . BA 5 HOH D 2 402 2 HOH HOH . BA 5 HOH D 3 403 12 HOH HOH . BA 5 HOH D 4 404 13 HOH HOH . BA 5 HOH D 5 405 19 HOH HOH . BA 5 HOH D 6 406 25 HOH HOH . BA 5 HOH D 7 407 36 HOH HOH . BA 5 HOH D 8 408 37 HOH HOH . BA 5 HOH D 9 409 39 HOH HOH . BA 5 HOH D 10 410 43 HOH HOH . BA 5 HOH D 11 411 45 HOH HOH . BA 5 HOH D 12 412 48 HOH HOH . BA 5 HOH D 13 413 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O17 DBH . . . X 4 -51.76 -15.325 24.355 1 79.95 ? O17 DBH 305 D 1 HETATM 2 C C21 DBH . . . X 4 -50.549 -15.612 24.214 1 80.42 ? C21 DBH 305 D 1 HETATM 3 O O9 DBH . . . X 4 -49.999 -15.513 23.092 1 81.04 ? O9 DBH 305 D 1 HETATM 4 C C18 DBH . . . X 4 -49.738 -16.09 25.403 1 80.5 ? C18 DBH 305 D 1 HETATM 5 C C15 DBH . . . X 4 -50.032 -15.628 26.696 1 80.63 ? C15 DBH 305 D 1 HETATM 6 C C12 DBH . . . X 4 -49.288 -16.066 27.796 1 80.01 ? C12 DBH 305 D 1 HETATM 7 C C3 DBH . . . X 4 -48.69 -17 25.226 1 79.9 ? C3 DBH 305 D 1 HETATM 8 O O3 DBH . . . X 4 -48.386 -17.475 23.981 1 79.99 ? O3 DBH 305 D 1 HETATM 9 C C6 DBH . . . X 4 -47.945 -17.441 26.318 1 79.49 ? C6 DBH 305 D 1 HETATM 10 C C9 DBH . . . X 4 -48.244 -16.971 27.603 1 79.71 ? C9 DBH 305 D 1 HETATM 11 O O6 DBH . . . X 4 -46.928 -18.332 26.127 1 76.73 ? O6 DBH 305 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 11 #