data_4E6A # _model_server_result.job_id JOhAP_n41EEAZ3WFpF1ilg _model_server_result.datetime_utc '2024-11-08 11:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4E6A # _exptl.entry_id 4E6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 640.826 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-methoxy-3-(octadecyloxy)propyl (1R,2R,3R,4S,6S)-2,3,4-trihydroxy-6-(2-methylpropoxy)cyclohexyl hydrogen (S)-phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E6A _cell.length_a 68.368 _cell.length_b 74.619 _cell.length_c 74.405 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H65 O10 P' _chem_comp.formula_weight 640.826 _chem_comp.id 0O9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-methoxy-3-(octadecyloxy)propyl (1R,2R,3R,4S,6S)-2,3,4-trihydroxy-6-(2-methylpropoxy)cyclohexyl hydrogen (S)-phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 0O9 sing 1 n n C22 O23 0O9 sing 2 n n O26 C21 0O9 sing 3 n n O26 C27 0O9 sing 4 n n C21 C20 0O9 sing 5 n n C24 O23 0O9 sing 6 n n C24 C25 0O9 sing 7 n n O19 P16 0O9 doub 8 n n C20 O17 0O9 sing 9 n n O17 P16 0O9 sing 10 n n P16 O18 0O9 sing 11 n n P16 O15 0O9 sing 12 n n O7 C3 0O9 sing 13 n n O15 C4 0O9 sing 14 n n C4 C3 0O9 sing 15 n n C4 C5 0O9 sing 16 n n C3 C2 0O9 sing 17 n n O8 C2 0O9 sing 18 n n O10 C5 0O9 sing 19 n n O10 C11 0O9 sing 20 n n C2 C1 0O9 sing 21 n n C5 C6 0O9 sing 22 n n C11 C12 0O9 sing 23 n n C6 C1 0O9 sing 24 n n C12 C13 0O9 sing 25 n n C12 C14 0O9 sing 26 n n C1 O9 0O9 sing 27 n n C5 H1 0O9 sing 28 n n C6 H2 0O9 sing 29 n n C6 H3 0O9 sing 30 n n O7 H4 0O9 sing 31 n n O18 H5 0O9 sing 32 n n C20 H6 0O9 sing 33 n n C20 H7 0O9 sing 34 n n C21 H8 0O9 sing 35 n n C27 H9 0O9 sing 36 n n C27 H10 0O9 sing 37 n n C27 H11 0O9 sing 38 n n C22 H12 0O9 sing 39 n n C22 H13 0O9 sing 40 n n C24 H14 0O9 sing 41 n n C24 H15 0O9 sing 42 n n C25 H16 0O9 sing 43 n n C25 H17 0O9 sing 44 n n C4 H19 0O9 sing 45 n n C3 H20 0O9 sing 46 n n C2 H21 0O9 sing 47 n n O8 H22 0O9 sing 48 n n C1 H23 0O9 sing 49 n n O9 H24 0O9 sing 50 n n C11 H25 0O9 sing 51 n n C11 H26 0O9 sing 52 n n C12 H27 0O9 sing 53 n n C14 H28 0O9 sing 54 n n C14 H29 0O9 sing 55 n n C14 H30 0O9 sing 56 n n C13 H31 0O9 sing 57 n n C13 H32 0O9 sing 58 n n C13 H33 0O9 sing 59 n n C25 C7 0O9 sing 60 n n C7 C8 0O9 sing 61 n n C8 C9 0O9 sing 62 n n C9 C10 0O9 sing 63 n n C10 C15 0O9 sing 64 n n C15 C16 0O9 sing 65 n n C16 C17 0O9 sing 66 n n C17 C18 0O9 sing 67 n n C18 C19 0O9 sing 68 n n C19 C23 0O9 sing 69 n n C23 C26 0O9 sing 70 n n C26 C28 0O9 sing 71 n n C28 C29 0O9 sing 72 n n C29 C30 0O9 sing 73 n n C30 C31 0O9 sing 74 n n C31 C32 0O9 sing 75 n n C7 H18 0O9 sing 76 n n C7 H34 0O9 sing 77 n n C8 H35 0O9 sing 78 n n C8 H36 0O9 sing 79 n n C9 H37 0O9 sing 80 n n C9 H38 0O9 sing 81 n n C10 H39 0O9 sing 82 n n C10 H40 0O9 sing 83 n n C15 H41 0O9 sing 84 n n C15 H42 0O9 sing 85 n n C16 H43 0O9 sing 86 n n C16 H44 0O9 sing 87 n n C17 H45 0O9 sing 88 n n C17 H46 0O9 sing 89 n n C18 H47 0O9 sing 90 n n C18 H48 0O9 sing 91 n n C19 H49 0O9 sing 92 n n C19 H50 0O9 sing 93 n n C23 H51 0O9 sing 94 n n C23 H52 0O9 sing 95 n n C26 H53 0O9 sing 96 n n C26 H54 0O9 sing 97 n n C28 H55 0O9 sing 98 n n C28 H56 0O9 sing 99 n n C29 H57 0O9 sing 100 n n C29 H58 0O9 sing 101 n n C30 H59 0O9 sing 102 n n C30 H60 0O9 sing 103 n n C31 H61 0O9 sing 104 n n C31 H62 0O9 sing 105 n n C32 H63 0O9 sing 106 n n C32 H64 0O9 sing 107 n n C32 H65 0O9 sing 108 n n # _atom_sites.entry_id 4E6A _atom_sites.fract_transf_matrix[1][1] 0.014627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0O9 A 1 500 500 0O9 23P . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 32 HOH HOH . C 3 HOH A 32 632 33 HOH HOH . C 3 HOH A 33 633 34 HOH HOH . C 3 HOH A 34 634 35 HOH HOH . C 3 HOH A 35 635 36 HOH HOH . C 3 HOH A 36 636 37 HOH HOH . C 3 HOH A 37 637 38 HOH HOH . C 3 HOH A 38 638 39 HOH HOH . C 3 HOH A 39 639 40 HOH HOH . C 3 HOH A 40 640 41 HOH HOH . C 3 HOH A 41 641 42 HOH HOH . C 3 HOH A 42 642 43 HOH HOH . C 3 HOH A 43 643 45 HOH HOH . C 3 HOH A 44 644 46 HOH HOH . C 3 HOH A 45 645 47 HOH HOH . C 3 HOH A 46 646 48 HOH HOH . C 3 HOH A 47 647 49 HOH HOH . C 3 HOH A 48 648 50 HOH HOH . C 3 HOH A 49 649 51 HOH HOH . C 3 HOH A 50 650 52 HOH HOH . C 3 HOH A 51 651 53 HOH HOH . C 3 HOH A 52 652 54 HOH HOH . C 3 HOH A 53 653 55 HOH HOH . C 3 HOH A 54 654 56 HOH HOH . C 3 HOH A 55 655 57 HOH HOH . C 3 HOH A 56 656 58 HOH HOH . C 3 HOH A 57 657 59 HOH HOH . C 3 HOH A 58 658 60 HOH HOH . C 3 HOH A 59 659 61 HOH HOH . C 3 HOH A 60 660 62 HOH HOH . C 3 HOH A 61 661 63 HOH HOH . C 3 HOH A 62 662 64 HOH HOH . C 3 HOH A 63 663 65 HOH HOH . C 3 HOH A 64 664 66 HOH HOH . C 3 HOH A 65 665 67 HOH HOH . C 3 HOH A 66 666 68 HOH HOH . C 3 HOH A 67 667 69 HOH HOH . C 3 HOH A 68 668 70 HOH HOH . C 3 HOH A 69 669 71 HOH HOH . C 3 HOH A 70 670 72 HOH HOH . C 3 HOH A 71 671 73 HOH HOH . C 3 HOH A 72 672 74 HOH HOH . C 3 HOH A 73 673 75 HOH HOH . C 3 HOH A 74 674 76 HOH HOH . C 3 HOH A 75 675 77 HOH HOH . C 3 HOH A 76 676 78 HOH HOH . C 3 HOH A 77 677 79 HOH HOH . C 3 HOH A 78 678 80 HOH HOH . C 3 HOH A 79 679 81 HOH HOH . C 3 HOH A 80 680 82 HOH HOH . C 3 HOH A 81 681 83 HOH HOH . C 3 HOH A 82 682 84 HOH HOH . C 3 HOH A 83 683 85 HOH HOH . C 3 HOH A 84 684 86 HOH HOH . C 3 HOH A 85 685 87 HOH HOH . C 3 HOH A 86 686 88 HOH HOH . C 3 HOH A 87 687 89 HOH HOH . C 3 HOH A 88 688 90 HOH HOH . C 3 HOH A 89 689 91 HOH HOH . C 3 HOH A 90 690 92 HOH HOH . C 3 HOH A 91 691 93 HOH HOH . C 3 HOH A 92 692 94 HOH HOH . C 3 HOH A 93 693 95 HOH HOH . C 3 HOH A 94 694 96 HOH HOH . C 3 HOH A 95 695 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 0O9 . . . B 2 3.342 7.374 2.054 1 58.14 ? C5 0O9 500 A 1 HETATM 2 C C6 0O9 . . . B 2 2.014 6.943 1.409 1 56.02 ? C6 0O9 500 A 1 HETATM 3 O O7 0O9 . . . B 2 3.503 4.709 4.678 0.2 58.87 ? O7 0O9 500 A 1 HETATM 4 O O19 0O9 . . . B 2 5.312 3.094 1.157 0.2 70.56 ? O19 0O9 500 A 1 HETATM 5 P P16 0O9 . . . B 2 5.285 4.618 1.114 1 72.3 ? P16 0O9 500 A 1 HETATM 6 O O18 0O9 . . . B 2 6.495 5.404 1.583 0.2 71.31 ? O18 0O9 500 A 1 HETATM 7 O O17 0O9 . . . B 2 4.955 5.065 -0.416 1 72.16 ? O17 0O9 500 A 1 HETATM 8 C C20 0O9 . . . B 2 5.938 5.617 -1.3 1 69.09 ? C20 0O9 500 A 1 HETATM 9 C C21 0O9 . . . B 2 6.712 4.571 -2.134 1 69 ? C21 0O9 500 A 1 HETATM 10 O O26 0O9 . . . B 2 6.263 3.208 -2.079 1 70.15 ? O26 0O9 500 A 1 HETATM 11 C C27 0O9 . . . B 2 7.315 2.257 -2.593 0.2 69.47 ? C27 0O9 500 A 1 HETATM 12 C C22 0O9 . . . B 2 6.729 5.036 -3.593 1 68.3 ? C22 0O9 500 A 1 HETATM 13 O O23 0O9 . . . B 2 8.096 5.226 -3.919 1 65.56 ? O23 0O9 500 A 1 HETATM 14 C C24 0O9 . . . B 2 8.684 6.317 -3.221 0.2 66.1 ? C24 0O9 500 A 1 HETATM 15 C C25 0O9 . . . B 2 9.912 5.796 -2.515 0.2 66.04 ? C25 0O9 500 A 1 HETATM 16 O O15 0O9 . . . B 2 3.981 5.129 1.922 1 66.81 ? O15 0O9 500 A 1 HETATM 17 C C4 0O9 . . . B 2 3.918 6.224 2.836 1 59.85 ? C4 0O9 500 A 1 HETATM 18 C C3 0O9 . . . B 2 2.954 5.818 3.957 1 58.85 ? C3 0O9 500 A 1 HETATM 19 C C2 0O9 . . . B 2 1.541 5.448 3.441 1 58.76 ? C2 0O9 500 A 1 HETATM 20 O O8 0O9 . . . B 2 1.553 4.146 2.835 0.2 58.52 ? O8 0O9 500 A 1 HETATM 21 C C1 0O9 . . . B 2 0.979 6.477 2.449 1 57.56 ? C1 0O9 500 A 1 HETATM 22 O O9 0O9 . . . B 2 0.49 7.61 3.187 0.2 57.1 ? O9 0O9 500 A 1 HETATM 23 O O10 0O9 . . . B 2 4.309 7.779 1.092 0.2 58.62 ? O10 0O9 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #