data_4E6C # _model_server_result.job_id sbx_8GIgSSl0nwdIOkfLig _model_server_result.datetime_utc '2024-10-20 20:39:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4E6C # _exptl.entry_id 4E6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 462.666 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1,1-dimethylpiperidin-1-ium-4-yl) octadecyl hydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E6C _cell.length_a 68.022 _cell.length_b 74.031 _cell.length_c 74.447 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H53 N O4 P 1' _chem_comp.formula_weight 462.666 _chem_comp.id 0O8 _chem_comp.mon_nstd_flag . _chem_comp.name '(1,1-dimethylpiperidin-1-ium-4-yl) octadecyl hydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PERIFOSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 H1 0O8 sing 1 n n P1 O1 0O8 sing 2 n n P1 O4 0O8 sing 3 n n O2 P1 0O8 doub 4 n n O3 P1 0O8 sing 5 n n C1 O3 0O8 sing 6 n n C1 H2 0O8 sing 7 n n C1 H3 0O8 sing 8 n n C2 C1 0O8 sing 9 n n C2 H4 0O8 sing 10 n n C2 H5 0O8 sing 11 n n C3 C2 0O8 sing 12 n n O4 C4 0O8 sing 13 n n C4 C10 0O8 sing 14 n n C4 H6 0O8 sing 15 n n C5 C6 0O8 sing 16 n n C5 C4 0O8 sing 17 n n C5 H7 0O8 sing 18 n n C5 H8 0O8 sing 19 n n C6 N1 0O8 sing 20 n n C6 H9 0O8 sing 21 n n C6 H10 0O8 sing 22 n n N1 C7 0O8 sing 23 n n N1 C8 0O8 sing 24 n n N1 C9 0O8 sing 25 n n C7 H11 0O8 sing 26 n n C7 H12 0O8 sing 27 n n C7 H13 0O8 sing 28 n n C8 H14 0O8 sing 29 n n C8 H15 0O8 sing 30 n n C8 H16 0O8 sing 31 n n C9 H17 0O8 sing 32 n n C9 H18 0O8 sing 33 n n C10 C9 0O8 sing 34 n n C10 H19 0O8 sing 35 n n C10 H20 0O8 sing 36 n n C3 H21 0O8 sing 37 n n C3 H22 0O8 sing 38 n n C3 C11 0O8 sing 39 n n C11 C12 0O8 sing 40 n n C12 C13 0O8 sing 41 n n C13 C14 0O8 sing 42 n n C14 C15 0O8 sing 43 n n C15 C16 0O8 sing 44 n n C16 C17 0O8 sing 45 n n C17 C18 0O8 sing 46 n n C18 C19 0O8 sing 47 n n C19 C20 0O8 sing 48 n n C20 C21 0O8 sing 49 n n C21 C22 0O8 sing 50 n n C22 C23 0O8 sing 51 n n C23 C24 0O8 sing 52 n n C24 C25 0O8 sing 53 n n C11 H23 0O8 sing 54 n n C11 H24 0O8 sing 55 n n C12 H25 0O8 sing 56 n n C12 H26 0O8 sing 57 n n C13 H27 0O8 sing 58 n n C13 H28 0O8 sing 59 n n C14 H29 0O8 sing 60 n n C14 H30 0O8 sing 61 n n C15 H31 0O8 sing 62 n n C15 H32 0O8 sing 63 n n C16 H33 0O8 sing 64 n n C16 H34 0O8 sing 65 n n C17 H35 0O8 sing 66 n n C17 H36 0O8 sing 67 n n C18 H37 0O8 sing 68 n n C18 H38 0O8 sing 69 n n C19 H39 0O8 sing 70 n n C19 H40 0O8 sing 71 n n C20 H41 0O8 sing 72 n n C20 H42 0O8 sing 73 n n C21 H43 0O8 sing 74 n n C21 H44 0O8 sing 75 n n C22 H45 0O8 sing 76 n n C22 H46 0O8 sing 77 n n C23 H47 0O8 sing 78 n n C23 H48 0O8 sing 79 n n C24 H49 0O8 sing 80 n n C24 H50 0O8 sing 81 n n C25 H51 0O8 sing 82 n n C25 H52 0O8 sing 83 n n C25 H53 0O8 sing 84 n n # _atom_sites.entry_id 4E6C _atom_sites.fract_transf_matrix[1][1] 0.014701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0O8 A 1 500 500 0O8 PER . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 25 HOH HOH . C 3 HOH A 25 625 26 HOH HOH . C 3 HOH A 26 626 27 HOH HOH . C 3 HOH A 27 627 29 HOH HOH . C 3 HOH A 28 628 30 HOH HOH . C 3 HOH A 29 629 31 HOH HOH . C 3 HOH A 30 630 32 HOH HOH . C 3 HOH A 31 631 33 HOH HOH . C 3 HOH A 32 632 34 HOH HOH . C 3 HOH A 33 633 35 HOH HOH . C 3 HOH A 34 634 36 HOH HOH . C 3 HOH A 35 635 37 HOH HOH . C 3 HOH A 36 636 38 HOH HOH . C 3 HOH A 37 637 41 HOH HOH . C 3 HOH A 38 638 42 HOH HOH . C 3 HOH A 39 639 43 HOH HOH . C 3 HOH A 40 640 46 HOH HOH . C 3 HOH A 41 641 47 HOH HOH . C 3 HOH A 42 642 48 HOH HOH . C 3 HOH A 43 643 49 HOH HOH . C 3 HOH A 44 644 50 HOH HOH . C 3 HOH A 45 645 51 HOH HOH . C 3 HOH A 46 646 52 HOH HOH . C 3 HOH A 47 647 53 HOH HOH . C 3 HOH A 48 648 54 HOH HOH . C 3 HOH A 49 649 55 HOH HOH . C 3 HOH A 50 650 56 HOH HOH . C 3 HOH A 51 651 58 HOH HOH . C 3 HOH A 52 652 59 HOH HOH . C 3 HOH A 53 653 61 HOH HOH . C 3 HOH A 54 654 62 HOH HOH . C 3 HOH A 55 655 64 HOH HOH . C 3 HOH A 56 656 65 HOH HOH . C 3 HOH A 57 657 67 HOH HOH . C 3 HOH A 58 658 68 HOH HOH . C 3 HOH A 59 659 70 HOH HOH . C 3 HOH A 60 660 71 HOH HOH . C 3 HOH A 61 661 72 HOH HOH . C 3 HOH A 62 662 73 HOH HOH . C 3 HOH A 63 663 74 HOH HOH . C 3 HOH A 64 664 75 HOH HOH . C 3 HOH A 65 665 76 HOH HOH . C 3 HOH A 66 666 77 HOH HOH . C 3 HOH A 67 667 81 HOH HOH . C 3 HOH A 68 668 82 HOH HOH . C 3 HOH A 69 669 83 HOH HOH . C 3 HOH A 70 670 87 HOH HOH . C 3 HOH A 71 671 88 HOH HOH . C 3 HOH A 72 672 90 HOH HOH . C 3 HOH A 73 673 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 0O8 . . . B 2 4.972 3.701 1.149 1 51.64 ? O1 0O8 500 A 1 HETATM 2 P P1 0O8 . . . B 2 4.798 5.154 0.656 1 53.87 ? P1 0O8 500 A 1 HETATM 3 O O2 0O8 . . . B 2 3.463 5.596 0.044 1 55.66 ? O2 0O8 500 A 1 HETATM 4 O O3 0O8 . . . B 2 5.786 5.436 -0.628 1 47.12 ? O3 0O8 500 A 1 HETATM 5 C C1 0O8 . . . B 2 5.984 4.326 -1.517 1 46.76 ? C1 0O8 500 A 1 HETATM 6 C C2 0O8 . . . B 2 7.037 4.462 -2.624 1 45.7 ? C2 0O8 500 A 1 HETATM 7 C C3 0O8 . . . B 2 7.249 3.053 -3.157 1 43.88 ? C3 0O8 500 A 1 HETATM 8 O O4 0O8 . . . B 2 5.036 6.193 1.917 1 46.04 ? O4 0O8 500 A 1 HETATM 9 C C4 0O8 . . . B 2 3.974 6.732 2.672 1 36.43 ? C4 0O8 500 A 1 HETATM 10 C C5 0O8 . . . B 2 3.551 5.589 3.566 1 36.35 ? C5 0O8 500 A 1 HETATM 11 C C6 0O8 . . . B 2 2.175 5.743 4.2 1 39.12 ? C6 0O8 500 A 1 HETATM 12 N N1 0O8 . . . B 2 1.097 6.269 3.307 1 41.27 ? N1 0O8 500 A 1 HETATM 13 C C7 0O8 . . . B 2 0.625 7.574 3.899 1 39.42 ? C7 0O8 500 A 1 HETATM 14 C C8 0O8 . . . B 2 0.011 5.255 3.308 1 37.45 ? C8 0O8 500 A 1 HETATM 15 C C9 0O8 . . . B 2 1.521 6.438 1.876 1 38.14 ? C9 0O8 500 A 1 HETATM 16 C C10 0O8 . . . B 2 2.853 7.176 1.724 1 37.28 ? C10 0O8 500 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #