data_4E6Q # _model_server_result.job_id UpPtxFjTSS0omhD5tiBwXg _model_server_result.datetime_utc '2024-11-26 13:56:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 4E6Q # _exptl.entry_id 4E6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 331.414 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1-benzylpiperidin-4-yl)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 4E6Q _cell.length_a 50.502 _cell.length_b 103.854 _cell.length_c 69.999 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 172 A GLU 1006 1_555 A N PTR 173 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C PTR 173 A PTR 1007 1_555 A N PTR 174 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C PTR 174 A PTR 1008 1_555 A N LYS 175 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C GLU 172 B GLU 1006 1_555 B N PTR 173 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale5 B C PTR 173 B PTR 1007 1_555 B N PTR 174 B PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 B C PTR 174 B PTR 1008 1_555 B N LYS 175 B LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C20 H21 N5' _chem_comp.formula_weight 331.414 _chem_comp.id 0NV _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1-benzylpiperidin-4-yl)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N14 C15 0NV sing 1 n y N14 C13 0NV sing 2 n y N12 C13 0NV doub 3 n y N12 C11 0NV sing 4 n y C15 C16 0NV doub 5 n y C13 C17 0NV sing 6 n y C11 C10 0NV doub 7 n y C16 C17 0NV sing 8 n y C17 C18 0NV doub 9 n y C10 C18 0NV sing 10 n y C10 N9 0NV sing 11 n y C18 N7 0NV sing 12 n y N9 C8 0NV doub 13 n y N7 C8 0NV sing 14 n y N7 C6 0NV sing 15 n n C6 C1 0NV sing 16 n n C6 C5 0NV sing 17 n n C1 C2 0NV sing 18 n n C2 N3 0NV sing 19 n n C5 C4 0NV sing 20 n n C4 N3 0NV sing 21 n n C21 C22 0NV doub 22 n y C21 C20 0NV sing 23 n y N3 C19 0NV sing 24 n n C22 C23 0NV sing 25 n y C19 C20 0NV sing 26 n n C20 C25 0NV doub 27 n y C23 C24 0NV doub 28 n y C25 C24 0NV sing 29 n y C1 H1 0NV sing 30 n n C1 H2 0NV sing 31 n n C2 H3 0NV sing 32 n n C2 H4 0NV sing 33 n n C4 H6 0NV sing 34 n n C4 H7 0NV sing 35 n n C5 H8 0NV sing 36 n n C5 H9 0NV sing 37 n n C6 H10 0NV sing 38 n n C8 H11 0NV sing 39 n n C11 H12 0NV sing 40 n n C15 H13 0NV sing 41 n n C16 H14 0NV sing 42 n n C19 H16 0NV sing 43 n n C19 H17 0NV sing 44 n n C21 H18 0NV sing 45 n n C22 H19 0NV sing 46 n n C23 H20 0NV sing 47 n n C24 H21 0NV sing 48 n n C25 H22 0NV sing 49 n n N14 H5 0NV sing 50 n n # _atom_sites.entry_id 4E6Q _atom_sites.fract_transf_matrix[1][1] 0.019801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0NV A 1 1201 1 0NV 0NV . D 2 0NV B 1 1201 1 0NV 0NV . E 3 HOH A 1 1301 6 HOH HOH . E 3 HOH A 2 1302 8 HOH HOH . E 3 HOH A 3 1303 18 HOH HOH . E 3 HOH A 4 1304 19 HOH HOH . E 3 HOH A 5 1305 21 HOH HOH . E 3 HOH A 6 1306 23 HOH HOH . E 3 HOH A 7 1307 27 HOH HOH . E 3 HOH A 8 1308 31 HOH HOH . E 3 HOH A 9 1309 37 HOH HOH . E 3 HOH A 10 1310 39 HOH HOH . E 3 HOH A 11 1311 42 HOH HOH . E 3 HOH A 12 1312 47 HOH HOH . E 3 HOH A 13 1313 50 HOH HOH . E 3 HOH A 14 1314 52 HOH HOH . E 3 HOH A 15 1315 60 HOH HOH . E 3 HOH A 16 1316 61 HOH HOH . E 3 HOH A 17 1317 63 HOH HOH . E 3 HOH A 18 1318 64 HOH HOH . E 3 HOH A 19 1319 68 HOH HOH . E 3 HOH A 20 1320 69 HOH HOH . E 3 HOH A 21 1321 70 HOH HOH . E 3 HOH A 22 1322 71 HOH HOH . E 3 HOH A 23 1323 75 HOH HOH . E 3 HOH A 24 1324 78 HOH HOH . E 3 HOH A 25 1325 79 HOH HOH . E 3 HOH A 26 1326 84 HOH HOH . E 3 HOH A 27 1327 85 HOH HOH . E 3 HOH A 28 1328 88 HOH HOH . E 3 HOH A 29 1329 90 HOH HOH . E 3 HOH A 30 1330 93 HOH HOH . E 3 HOH A 31 1331 97 HOH HOH . E 3 HOH A 32 1332 99 HOH HOH . E 3 HOH A 33 1333 100 HOH HOH . E 3 HOH A 34 1334 102 HOH HOH . E 3 HOH A 35 1335 103 HOH HOH . E 3 HOH A 36 1336 105 HOH HOH . E 3 HOH A 37 1337 110 HOH HOH . E 3 HOH A 38 1338 111 HOH HOH . E 3 HOH A 39 1339 116 HOH HOH . E 3 HOH A 40 1340 122 HOH HOH . E 3 HOH A 41 1341 123 HOH HOH . E 3 HOH A 42 1342 125 HOH HOH . E 3 HOH A 43 1343 128 HOH HOH . E 3 HOH A 44 1344 132 HOH HOH . E 3 HOH A 45 1345 144 HOH HOH . E 3 HOH A 46 1346 146 HOH HOH . E 3 HOH A 47 1347 154 HOH HOH . E 3 HOH A 48 1348 166 HOH HOH . E 3 HOH A 49 1349 170 HOH HOH . E 3 HOH A 50 1350 173 HOH HOH . E 3 HOH A 51 1351 187 HOH HOH . E 3 HOH A 52 1352 190 HOH HOH . E 3 HOH A 53 1353 197 HOH HOH . E 3 HOH A 54 1354 198 HOH HOH . E 3 HOH A 55 1355 202 HOH HOH . E 3 HOH A 56 1356 204 HOH HOH . E 3 HOH A 57 1357 210 HOH HOH . E 3 HOH A 58 1358 213 HOH HOH . E 3 HOH A 59 1359 218 HOH HOH . E 3 HOH A 60 1360 224 HOH HOH . E 3 HOH A 61 1361 230 HOH HOH . E 3 HOH A 62 1362 231 HOH HOH . E 3 HOH A 63 1363 236 HOH HOH . E 3 HOH A 64 1364 239 HOH HOH . E 3 HOH A 65 1365 240 HOH HOH . E 3 HOH A 66 1366 247 HOH HOH . E 3 HOH A 67 1367 253 HOH HOH . E 3 HOH A 68 1368 260 HOH HOH . E 3 HOH A 69 1369 263 HOH HOH . E 3 HOH A 70 1370 274 HOH HOH . E 3 HOH A 71 1371 276 HOH HOH . E 3 HOH A 72 1372 299 HOH HOH . E 3 HOH A 73 1373 317 HOH HOH . E 3 HOH A 74 1374 318 HOH HOH . E 3 HOH A 75 1375 327 HOH HOH . E 3 HOH A 76 1376 337 HOH HOH . E 3 HOH A 77 1377 338 HOH HOH . E 3 HOH A 78 1378 342 HOH HOH . E 3 HOH A 79 1379 349 HOH HOH . E 3 HOH A 80 1380 351 HOH HOH . E 3 HOH A 81 1381 360 HOH HOH . E 3 HOH A 82 1382 364 HOH HOH . E 3 HOH A 83 1383 370 HOH HOH . E 3 HOH A 84 1384 371 HOH HOH . E 3 HOH A 85 1385 386 HOH HOH . E 3 HOH A 86 1386 391 HOH HOH . E 3 HOH A 87 1387 393 HOH HOH . F 3 HOH B 1 1301 10 HOH HOH . F 3 HOH B 2 1302 13 HOH HOH . F 3 HOH B 3 1303 15 HOH HOH . F 3 HOH B 4 1304 17 HOH HOH . F 3 HOH B 5 1305 26 HOH HOH . F 3 HOH B 6 1306 28 HOH HOH . F 3 HOH B 7 1307 29 HOH HOH . F 3 HOH B 8 1308 32 HOH HOH . F 3 HOH B 9 1309 40 HOH HOH . F 3 HOH B 10 1310 43 HOH HOH . F 3 HOH B 11 1311 46 HOH HOH . F 3 HOH B 12 1312 51 HOH HOH . F 3 HOH B 13 1313 53 HOH HOH . F 3 HOH B 14 1314 56 HOH HOH . F 3 HOH B 15 1315 58 HOH HOH . F 3 HOH B 16 1316 59 HOH HOH . F 3 HOH B 17 1317 62 HOH HOH . F 3 HOH B 18 1318 66 HOH HOH . F 3 HOH B 19 1319 73 HOH HOH . F 3 HOH B 20 1320 74 HOH HOH . F 3 HOH B 21 1321 77 HOH HOH . F 3 HOH B 22 1322 80 HOH HOH . F 3 HOH B 23 1323 83 HOH HOH . F 3 HOH B 24 1324 87 HOH HOH . F 3 HOH B 25 1325 92 HOH HOH . F 3 HOH B 26 1326 98 HOH HOH . F 3 HOH B 27 1327 107 HOH HOH . F 3 HOH B 28 1328 108 HOH HOH . F 3 HOH B 29 1329 118 HOH HOH . F 3 HOH B 30 1330 127 HOH HOH . F 3 HOH B 31 1331 131 HOH HOH . F 3 HOH B 32 1332 133 HOH HOH . F 3 HOH B 33 1333 135 HOH HOH . F 3 HOH B 34 1334 137 HOH HOH . F 3 HOH B 35 1335 139 HOH HOH . F 3 HOH B 36 1336 141 HOH HOH . F 3 HOH B 37 1337 142 HOH HOH . F 3 HOH B 38 1338 143 HOH HOH . F 3 HOH B 39 1339 148 HOH HOH . F 3 HOH B 40 1340 163 HOH HOH . F 3 HOH B 41 1341 172 HOH HOH . F 3 HOH B 42 1342 175 HOH HOH . F 3 HOH B 43 1343 177 HOH HOH . F 3 HOH B 44 1344 178 HOH HOH . F 3 HOH B 45 1345 180 HOH HOH . F 3 HOH B 46 1346 181 HOH HOH . F 3 HOH B 47 1347 182 HOH HOH . F 3 HOH B 48 1348 188 HOH HOH . F 3 HOH B 49 1349 189 HOH HOH . F 3 HOH B 50 1350 193 HOH HOH . F 3 HOH B 51 1351 194 HOH HOH . F 3 HOH B 52 1352 199 HOH HOH . F 3 HOH B 53 1353 201 HOH HOH . F 3 HOH B 54 1354 212 HOH HOH . F 3 HOH B 55 1355 215 HOH HOH . F 3 HOH B 56 1356 227 HOH HOH . F 3 HOH B 57 1357 233 HOH HOH . F 3 HOH B 58 1358 234 HOH HOH . F 3 HOH B 59 1359 237 HOH HOH . F 3 HOH B 60 1360 242 HOH HOH . F 3 HOH B 61 1361 243 HOH HOH . F 3 HOH B 62 1362 251 HOH HOH . F 3 HOH B 63 1363 256 HOH HOH . F 3 HOH B 64 1364 271 HOH HOH . F 3 HOH B 65 1365 272 HOH HOH . F 3 HOH B 66 1366 275 HOH HOH . F 3 HOH B 67 1367 277 HOH HOH . F 3 HOH B 68 1368 278 HOH HOH . F 3 HOH B 69 1369 288 HOH HOH . F 3 HOH B 70 1370 291 HOH HOH . F 3 HOH B 71 1371 297 HOH HOH . F 3 HOH B 72 1372 307 HOH HOH . F 3 HOH B 73 1373 308 HOH HOH . F 3 HOH B 74 1374 311 HOH HOH . F 3 HOH B 75 1375 313 HOH HOH . F 3 HOH B 76 1376 315 HOH HOH . F 3 HOH B 77 1377 319 HOH HOH . F 3 HOH B 78 1378 322 HOH HOH . F 3 HOH B 79 1379 324 HOH HOH . F 3 HOH B 80 1380 328 HOH HOH . F 3 HOH B 81 1381 330 HOH HOH . F 3 HOH B 82 1382 333 HOH HOH . F 3 HOH B 83 1383 336 HOH HOH . F 3 HOH B 84 1384 353 HOH HOH . F 3 HOH B 85 1385 354 HOH HOH . F 3 HOH B 86 1386 356 HOH HOH . F 3 HOH B 87 1387 357 HOH HOH . F 3 HOH B 88 1388 366 HOH HOH . F 3 HOH B 89 1389 372 HOH HOH . F 3 HOH B 90 1390 373 HOH HOH . F 3 HOH B 91 1391 374 HOH HOH . F 3 HOH B 92 1392 379 HOH HOH . F 3 HOH B 93 1393 381 HOH HOH . F 3 HOH B 94 1394 382 HOH HOH . F 3 HOH B 95 1395 383 HOH HOH . F 3 HOH B 96 1396 392 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0NV . . . C 2 10.929 26.734 8.825 1 10.13 ? C1 0NV 1201 A 1 HETATM 2 C C2 0NV . . . C 2 10.745 25.324 8.233 1 21.27 ? C2 0NV 1201 A 1 HETATM 3 N N3 0NV . . . C 2 11.681 25.066 7.109 1 23.67 ? N3 0NV 1201 A 1 HETATM 4 C C4 0NV . . . C 2 13.076 25.224 7.53 1 24.13 ? C4 0NV 1201 A 1 HETATM 5 C C5 0NV . . . C 2 13.371 26.653 8.064 1 22.8 ? C5 0NV 1201 A 1 HETATM 6 C C6 0NV . . . C 2 12.399 26.814 9.243 1 19.63 ? C6 0NV 1201 A 1 HETATM 7 N N7 0NV . . . C 2 12.686 28.083 9.884 1 16.66 ? N7 0NV 1201 A 1 HETATM 8 C C8 0NV . . . C 2 12.938 29.26 9.223 1 16.74 ? C8 0NV 1201 A 1 HETATM 9 N N9 0NV . . . C 2 13.147 30.212 10.07 1 10.13 ? N9 0NV 1201 A 1 HETATM 10 C C10 0NV . . . C 2 13.056 29.726 11.341 1 9.69 ? C10 0NV 1201 A 1 HETATM 11 C C11 0NV . . . C 2 13.197 30.281 12.614 1 12.7 ? C11 0NV 1201 A 1 HETATM 12 N N12 0NV . . . C 2 13.022 29.571 13.695 1 13.04 ? N12 0NV 1201 A 1 HETATM 13 C C13 0NV . . . C 2 12.71 28.278 13.67 1 12.63 ? C13 0NV 1201 A 1 HETATM 14 N N14 0NV . . . C 2 12.513 27.368 14.668 1 12.88 ? N14 0NV 1201 A 1 HETATM 15 C C15 0NV . . . C 2 12.248 26.138 14.099 1 8.11 ? C15 0NV 1201 A 1 HETATM 16 C C16 0NV . . . C 2 12.227 26.203 12.761 1 6.4 ? C16 0NV 1201 A 1 HETATM 17 C C17 0NV . . . C 2 12.549 27.607 12.44 1 15.08 ? C17 0NV 1201 A 1 HETATM 18 C C18 0NV . . . C 2 12.726 28.337 11.243 1 14.19 ? C18 0NV 1201 A 1 HETATM 19 C C19 0NV . . . C 2 11.517 23.689 6.549 1 29.36 ? C19 0NV 1201 A 1 HETATM 20 C C20 0NV . . . C 2 10.059 23.347 6.245 1 31.23 ? C20 0NV 1201 A 1 HETATM 21 C C21 0NV . . . C 2 9.363 22.414 7.023 1 30.29 ? C21 0NV 1201 A 1 HETATM 22 C C22 0NV . . . C 2 8.04 22.088 6.782 1 31.3 ? C22 0NV 1201 A 1 HETATM 23 C C23 0NV . . . C 2 7.424 22.717 5.713 1 30.63 ? C23 0NV 1201 A 1 HETATM 24 C C24 0NV . . . C 2 8.099 23.647 4.929 1 29.05 ? C24 0NV 1201 A 1 HETATM 25 C C25 0NV . . . C 2 9.42 23.969 5.181 1 31.04 ? C25 0NV 1201 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #