data_4E8A # _model_server_result.job_id qO-FssOUSFy6Z1k_sVg0dQ _model_server_result.datetime_utc '2024-10-20 20:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4E8A # _exptl.entry_id 4E8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 680.89 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S,3R,4S,6S)-6-(cyclohexylmethoxy)-2,3,4-trihydroxycyclohexyl (2R)-2-methoxy-3-(octadecyloxy)propyl hydrogen (S)-phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E8A _cell.length_a 67.091 _cell.length_b 69.986 _cell.length_c 74.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H69 O10 P' _chem_comp.formula_weight 680.89 _chem_comp.id 0OA _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S,3R,4S,6S)-6-(cyclohexylmethoxy)-2,3,4-trihydroxycyclohexyl (2R)-2-methoxy-3-(octadecyloxy)propyl hydrogen (S)-phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'phosphatidylinositol ether lipid analogue 24 (PIA24)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 H1 0OA sing 1 n n P12 O15 0OA sing 2 n n O14 P12 0OA doub 3 n n O13 P12 0OA sing 4 n n O13 C16 0OA sing 5 n n C16 C17 0OA sing 6 n n C16 H2 0OA sing 7 n n C16 H3 0OA sing 8 n n C17 O22 0OA sing 9 n n C17 C18 0OA sing 10 n n C17 H4 0OA sing 11 n n O22 C23 0OA sing 12 n n C23 H5 0OA sing 13 n n C23 H6 0OA sing 14 n n C23 H7 0OA sing 15 n n C18 O19 0OA sing 16 n n C18 H8 0OA sing 17 n n C18 H9 0OA sing 18 n n O19 C20 0OA sing 19 n n C20 C21 0OA sing 20 n n C20 H10 0OA sing 21 n n C20 H11 0OA sing 22 n n C21 H12 0OA sing 23 n n C21 H13 0OA sing 24 n n C21 C13 0OA sing 25 n n O11 C4 0OA sing 26 n n O11 P12 0OA sing 27 n n C4 H15 0OA sing 28 n n C3 O7 0OA sing 29 n n C3 C4 0OA sing 30 n n C3 H16 0OA sing 31 n n O7 H17 0OA sing 32 n n C2 C3 0OA sing 33 n n C2 H18 0OA sing 34 n n O8 C2 0OA sing 35 n n O8 H19 0OA sing 36 n n C5 C4 0OA sing 37 n n C5 H20 0OA sing 38 n n C6 C5 0OA sing 39 n n C6 H21 0OA sing 40 n n C6 H22 0OA sing 41 n n C1 C2 0OA sing 42 n n C1 C6 0OA sing 43 n n C1 H23 0OA sing 44 n n O9 C1 0OA sing 45 n n O9 H24 0OA sing 46 n n O10 C5 0OA sing 47 n n O10 C7 0OA sing 48 n n C7 C8 0OA sing 49 n n C7 H14 0OA sing 50 n n C7 H25 0OA sing 51 n n C13 C14 0OA sing 52 n n C13 H35 0OA sing 53 n n C13 H36 0OA sing 54 n n C14 C15 0OA sing 55 n n C14 H37 0OA sing 56 n n C14 H38 0OA sing 57 n n C15 C19 0OA sing 58 n n C15 H39 0OA sing 59 n n C15 H40 0OA sing 60 n n C19 C22 0OA sing 61 n n C19 H41 0OA sing 62 n n C19 H42 0OA sing 63 n n C22 C24 0OA sing 64 n n C22 H43 0OA sing 65 n n C22 H44 0OA sing 66 n n C24 C25 0OA sing 67 n n C24 H45 0OA sing 68 n n C24 H46 0OA sing 69 n n C25 C26 0OA sing 70 n n C25 H47 0OA sing 71 n n C25 H48 0OA sing 72 n n C26 C27 0OA sing 73 n n C26 H49 0OA sing 74 n n C26 H50 0OA sing 75 n n C27 C28 0OA sing 76 n n C27 H51 0OA sing 77 n n C27 H52 0OA sing 78 n n C28 C29 0OA sing 79 n n C28 H53 0OA sing 80 n n C28 H54 0OA sing 81 n n C29 C30 0OA sing 82 n n C29 H55 0OA sing 83 n n C29 H56 0OA sing 84 n n C30 C31 0OA sing 85 n n C30 H57 0OA sing 86 n n C30 H58 0OA sing 87 n n C31 C32 0OA sing 88 n n C31 H59 0OA sing 89 n n C31 H60 0OA sing 90 n n C32 C33 0OA sing 91 n n C32 H61 0OA sing 92 n n C32 H62 0OA sing 93 n n C33 C34 0OA sing 94 n n C8 C9 0OA sing 95 n n C9 C10 0OA sing 96 n n C10 C11 0OA sing 97 n n C11 C12 0OA sing 98 n n C12 C35 0OA sing 99 n n C35 C8 0OA sing 100 n n C33 H541 0OA sing 101 n n C33 H551 0OA sing 102 n n C34 H561 0OA sing 103 n n C34 H571 0OA sing 104 n n C34 H581 0OA sing 105 n n C8 H591 0OA sing 106 n n C9 H601 0OA sing 107 n n C9 H611 0OA sing 108 n n C10 H621 0OA sing 109 n n C10 H63 0OA sing 110 n n C11 H64 0OA sing 111 n n C11 H65 0OA sing 112 n n C12 H66 0OA sing 113 n n C12 H67 0OA sing 114 n n C35 H68 0OA sing 115 n n C35 H69 0OA sing 116 n n # _atom_sites.entry_id 4E8A _atom_sites.fract_transf_matrix[1][1] 0.014905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0OA A 1 500 500 0OA 0OA . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 9 HOH HOH . C 3 HOH A 8 608 12 HOH HOH . C 3 HOH A 9 609 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O15 0OA . . . B 2 -3.481 4.18 -38.88 0.5 52.1 ? O15 0OA 500 A 1 HETATM 2 P P12 0OA . . . B 2 -3.734 5.671 -38.659 0.5 51.41 ? P12 0OA 500 A 1 HETATM 3 O O14 0OA . . . B 2 -4.4 6.503 -39.729 0.5 49.33 ? O14 0OA 500 A 1 HETATM 4 O O13 0OA . . . B 2 -4.578 5.808 -37.279 0.5 51.62 ? O13 0OA 500 A 1 HETATM 5 C C16 0OA . . . B 2 -5.118 4.648 -36.649 0.5 50.88 ? C16 0OA 500 A 1 HETATM 6 C C17 0OA . . . B 2 -5.176 5.022 -35.112 0.5 51.05 ? C17 0OA 500 A 1 HETATM 7 O O22 0OA . . . B 2 -5.367 3.781 -34.43 0.5 53.36 ? O22 0OA 500 A 1 HETATM 8 C C23 0OA . . . B 2 -5.819 3.981 -33.081 0.5 53.24 ? C23 0OA 500 A 1 HETATM 9 C C18 0OA . . . B 2 -6.388 5.877 -34.821 0.5 49.34 ? C18 0OA 500 A 1 HETATM 10 O O19 0OA . . . B 2 -7.433 4.967 -34.473 0.5 50.4 ? O19 0OA 500 A 1 HETATM 11 C C20 0OA . . . B 2 -7.321 4.462 -33.142 0.5 48.74 ? C20 0OA 500 A 1 HETATM 12 C C21 0OA . . . B 2 -7.341 2.95 -33.209 0.5 47.85 ? C21 0OA 500 A 1 HETATM 13 O O11 0OA . . . B 2 -2.326 6.322 -38.26 0.5 46.24 ? O11 0OA 500 A 1 HETATM 14 C C4 0OA . . . B 2 -1.232 5.584 -38.74 0.5 46.27 ? C4 0OA 500 A 1 HETATM 15 C C3 0OA . . . B 2 0.045 6.371 -39.011 0.5 46.47 ? C3 0OA 500 A 1 HETATM 16 O O7 0OA . . . B 2 0.561 7.002 -37.848 0.5 46.61 ? O7 0OA 500 A 1 HETATM 17 C C2 0OA . . . B 2 1.061 5.408 -39.559 0.5 45.3 ? C2 0OA 500 A 1 HETATM 18 O O8 0OA . . . B 2 2.4 5.905 -39.514 0.5 45.36 ? O8 0OA 500 A 1 HETATM 19 C C5 0OA . . . B 2 -1.686 4.705 -39.903 0.5 45.97 ? C5 0OA 500 A 1 HETATM 20 C C6 0OA . . . B 2 -0.588 4.344 -40.908 0.5 45.79 ? C6 0OA 500 A 1 HETATM 21 C C1 0OA . . . B 2 0.569 5.339 -40.959 0.5 45.19 ? C1 0OA 500 A 1 HETATM 22 O O9 0OA . . . B 2 1.66 4.951 -41.797 0.5 45.76 ? O9 0OA 500 A 1 HETATM 23 O O10 0OA . . . B 2 -2.752 5.354 -40.591 0.5 46.73 ? O10 0OA 500 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #