data_4E9A # _model_server_result.job_id 1VC96hNBMf2Qj6g7wK2Jzg _model_server_result.datetime_utc '2024-12-02 06:12:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 4E9A # _exptl.entry_id 4E9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E9A _cell.length_a 41.891 _cell.length_b 52.057 _cell.length_c 92.064 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 137 A HIS 138 1_555 B CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A NE2 HIS 141 A HIS 142 1_555 B CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 B CO CO . A CO 201 1_555 G O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 4E9A _atom_sites.fract_transf_matrix[1][1] 0.023871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 201 300 CO CO . C 3 QAP A 1 202 200 QAP C13 . D 4 EPE A 1 203 201 EPE EPE . E 5 DMS A 1 204 4001 DMS DMS . F 5 DMS A 1 205 4001 DMS DMS . G 6 HOH A 1 301 1 HOH HOH . G 6 HOH A 2 302 2 HOH HOH . G 6 HOH A 3 303 3 HOH HOH . G 6 HOH A 4 304 4 HOH HOH . G 6 HOH A 5 305 5 HOH HOH . G 6 HOH A 6 306 6 HOH HOH . G 6 HOH A 7 307 7 HOH HOH . G 6 HOH A 8 308 8 HOH HOH . G 6 HOH A 9 309 9 HOH HOH . G 6 HOH A 10 310 10 HOH HOH . G 6 HOH A 11 311 11 HOH HOH . G 6 HOH A 12 312 12 HOH HOH . G 6 HOH A 13 313 13 HOH HOH . G 6 HOH A 14 314 14 HOH HOH . G 6 HOH A 15 315 15 HOH HOH . G 6 HOH A 16 316 16 HOH HOH . G 6 HOH A 17 317 17 HOH HOH . G 6 HOH A 18 318 18 HOH HOH . G 6 HOH A 19 319 19 HOH HOH . G 6 HOH A 20 320 20 HOH HOH . G 6 HOH A 21 321 21 HOH HOH . G 6 HOH A 22 322 22 HOH HOH . G 6 HOH A 23 323 23 HOH HOH . G 6 HOH A 24 324 24 HOH HOH . G 6 HOH A 25 325 25 HOH HOH . G 6 HOH A 26 326 26 HOH HOH . G 6 HOH A 27 327 27 HOH HOH . G 6 HOH A 28 328 28 HOH HOH . G 6 HOH A 29 329 29 HOH HOH . G 6 HOH A 30 330 30 HOH HOH . G 6 HOH A 31 331 31 HOH HOH . G 6 HOH A 32 332 32 HOH HOH . G 6 HOH A 33 333 33 HOH HOH . G 6 HOH A 34 334 34 HOH HOH . G 6 HOH A 35 335 35 HOH HOH . G 6 HOH A 36 336 36 HOH HOH . G 6 HOH A 37 337 37 HOH HOH . G 6 HOH A 38 338 38 HOH HOH . G 6 HOH A 39 339 39 HOH HOH . G 6 HOH A 40 340 40 HOH HOH . G 6 HOH A 41 341 41 HOH HOH . G 6 HOH A 42 342 42 HOH HOH . G 6 HOH A 43 343 43 HOH HOH . G 6 HOH A 44 344 44 HOH HOH . G 6 HOH A 45 345 45 HOH HOH . G 6 HOH A 46 346 46 HOH HOH . G 6 HOH A 47 347 47 HOH HOH . G 6 HOH A 48 348 48 HOH HOH . G 6 HOH A 49 349 49 HOH HOH . G 6 HOH A 50 350 50 HOH HOH . G 6 HOH A 51 351 51 HOH HOH . G 6 HOH A 52 352 52 HOH HOH . G 6 HOH A 53 353 53 HOH HOH . G 6 HOH A 54 354 54 HOH HOH . G 6 HOH A 55 355 55 HOH HOH . G 6 HOH A 56 356 56 HOH HOH . G 6 HOH A 57 357 57 HOH HOH . G 6 HOH A 58 358 58 HOH HOH . G 6 HOH A 59 359 59 HOH HOH . G 6 HOH A 60 360 60 HOH HOH . G 6 HOH A 61 361 61 HOH HOH . G 6 HOH A 62 362 62 HOH HOH . G 6 HOH A 63 363 63 HOH HOH . G 6 HOH A 64 364 64 HOH HOH . G 6 HOH A 65 365 65 HOH HOH . G 6 HOH A 66 366 66 HOH HOH . G 6 HOH A 67 367 67 HOH HOH . G 6 HOH A 68 368 68 HOH HOH . G 6 HOH A 69 369 69 HOH HOH . G 6 HOH A 70 370 70 HOH HOH . G 6 HOH A 71 371 71 HOH HOH . G 6 HOH A 72 372 72 HOH HOH . G 6 HOH A 73 373 73 HOH HOH . G 6 HOH A 74 374 74 HOH HOH . G 6 HOH A 75 375 75 HOH HOH . G 6 HOH A 76 376 76 HOH HOH . G 6 HOH A 77 377 77 HOH HOH . G 6 HOH A 78 378 78 HOH HOH . G 6 HOH A 79 379 79 HOH HOH . G 6 HOH A 80 380 80 HOH HOH . G 6 HOH A 81 381 81 HOH HOH . G 6 HOH A 82 382 82 HOH HOH . G 6 HOH A 83 383 83 HOH HOH . G 6 HOH A 84 384 84 HOH HOH . G 6 HOH A 85 385 85 HOH HOH . G 6 HOH A 86 386 86 HOH HOH . G 6 HOH A 87 387 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 5 80.268 100.395 61.703 1 55.28 ? S DMS 204 A 1 HETATM 2 O O DMS . . . E 5 81.093 101.43 62.372 1 45.04 ? O DMS 204 A 1 HETATM 3 C C1 DMS . . . E 5 78.653 101.015 61.372 1 34.27 ? C1 DMS 204 A 1 HETATM 4 C C2 DMS . . . E 5 80.969 99.983 60.135 1 24.15 ? C2 DMS 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #