data_4E9B # _model_server_result.job_id aXtCtWhi_DZsuNHeKaXcYQ _model_server_result.datetime_utc '2024-11-13 05:15:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4E9B # _exptl.entry_id 4E9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.498 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACTINONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E9B _cell.length_a 41.394 _cell.length_b 51.779 _cell.length_c 91.074 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 137 A HIS 138 1_555 B CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A NE2 HIS 141 A HIS 142 1_555 B CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 B CO CO . A CO 201 1_555 C O4 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 B CO CO . A CO 201 1_555 C O2 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C19 H35 N3 O5' _chem_comp.formula_weight 385.498 _chem_comp.id BB2 _chem_comp.mon_nstd_flag . _chem_comp.name ACTINONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C3 BB2 sing 70 n n C5 C6 BB2 sing 71 n n C5 H51 BB2 sing 72 n n C5 H52 BB2 sing 73 n n C3 O4 BB2 doub 74 n n C3 N1 BB2 sing 75 n n N1 O2 BB2 sing 76 n n N1 HN1 BB2 sing 77 n n O2 HO2 BB2 sing 78 n n C6 C12 BB2 sing 79 n n C6 C7 BB2 sing 80 n n C6 H6 BB2 sing 81 n n C12 O13 BB2 doub 82 n n C12 N14 BB2 sing 83 n n C7 C8 BB2 sing 84 n n C7 H71 BB2 sing 85 n n C7 H72 BB2 sing 86 n n C8 C9 BB2 sing 87 n n C8 H81 BB2 sing 88 n n C8 H82 BB2 sing 89 n n C9 C10 BB2 sing 90 n n C9 H91 BB2 sing 91 n n C9 H92 BB2 sing 92 n n C10 C11 BB2 sing 93 n n C10 H101 BB2 sing 94 n n C10 H102 BB2 sing 95 n n C11 H111 BB2 sing 96 n n C11 H112 BB2 sing 97 n n C11 H113 BB2 sing 98 n n N14 C15 BB2 sing 99 n n N14 H14 BB2 sing 100 n n C15 C16 BB2 sing 101 n n C15 C19 BB2 sing 102 n n C15 H15 BB2 sing 103 n n C16 C18 BB2 sing 104 n n C16 C17 BB2 sing 105 n n C16 H16 BB2 sing 106 n n C18 H181 BB2 sing 107 n n C18 H182 BB2 sing 108 n n C18 H183 BB2 sing 109 n n C17 H171 BB2 sing 110 n n C17 H172 BB2 sing 111 n n C17 H173 BB2 sing 112 n n C19 O20 BB2 doub 113 n n C19 N21 BB2 sing 114 n n N21 C22 BB2 sing 115 n n N21 C23 BB2 sing 116 n n C22 C25 BB2 sing 117 n n C22 C26 BB2 sing 118 n n C22 H22 BB2 sing 119 n n C23 C24 BB2 sing 120 n n C23 H231 BB2 sing 121 n n C23 H232 BB2 sing 122 n n C24 C25 BB2 sing 123 n n C24 H241 BB2 sing 124 n n C24 H242 BB2 sing 125 n n C25 H251 BB2 sing 126 n n C25 H252 BB2 sing 127 n n C26 O27 BB2 sing 128 n n C26 H261 BB2 sing 129 n n C26 H262 BB2 sing 130 n n O27 H27 BB2 sing 131 n n # _atom_sites.entry_id 4E9B _atom_sites.fract_transf_matrix[1][1] 0.024158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 201 300 CO CO . C 3 BB2 A 1 202 401 BB2 BB2 . D 4 EPE A 1 203 552 EPE EPE . E 5 DMS A 1 204 4001 DMS DMS . F 5 DMS A 1 205 4001 DMS DMS . G 6 HOH A 1 301 301 HOH HOH . G 6 HOH A 2 302 303 HOH HOH . G 6 HOH A 3 303 305 HOH HOH . G 6 HOH A 4 304 306 HOH HOH . G 6 HOH A 5 305 307 HOH HOH . G 6 HOH A 6 306 308 HOH HOH . G 6 HOH A 7 307 309 HOH HOH . G 6 HOH A 8 308 311 HOH HOH . G 6 HOH A 9 309 314 HOH HOH . G 6 HOH A 10 310 317 HOH HOH . G 6 HOH A 11 311 318 HOH HOH . G 6 HOH A 12 312 319 HOH HOH . G 6 HOH A 13 313 320 HOH HOH . G 6 HOH A 14 314 321 HOH HOH . G 6 HOH A 15 315 322 HOH HOH . G 6 HOH A 16 316 324 HOH HOH . G 6 HOH A 17 317 326 HOH HOH . G 6 HOH A 18 318 327 HOH HOH . G 6 HOH A 19 319 329 HOH HOH . G 6 HOH A 20 320 331 HOH HOH . G 6 HOH A 21 321 333 HOH HOH . G 6 HOH A 22 322 335 HOH HOH . G 6 HOH A 23 323 336 HOH HOH . G 6 HOH A 24 324 339 HOH HOH . G 6 HOH A 25 325 342 HOH HOH . G 6 HOH A 26 326 345 HOH HOH . G 6 HOH A 27 327 346 HOH HOH . G 6 HOH A 28 328 348 HOH HOH . G 6 HOH A 29 329 349 HOH HOH . G 6 HOH A 30 330 351 HOH HOH . G 6 HOH A 31 331 357 HOH HOH . G 6 HOH A 32 332 360 HOH HOH . G 6 HOH A 33 333 362 HOH HOH . G 6 HOH A 34 334 367 HOH HOH . G 6 HOH A 35 335 369 HOH HOH . G 6 HOH A 36 336 372 HOH HOH . G 6 HOH A 37 337 380 HOH HOH . G 6 HOH A 38 338 382 HOH HOH . G 6 HOH A 39 339 384 HOH HOH . G 6 HOH A 40 340 386 HOH HOH . G 6 HOH A 41 341 391 HOH HOH . G 6 HOH A 42 342 393 HOH HOH . G 6 HOH A 43 343 395 HOH HOH . G 6 HOH A 44 344 400 HOH HOH . G 6 HOH A 45 345 401 HOH HOH . G 6 HOH A 46 346 404 HOH HOH . G 6 HOH A 47 347 405 HOH HOH . G 6 HOH A 48 348 406 HOH HOH . G 6 HOH A 49 349 407 HOH HOH . G 6 HOH A 50 350 409 HOH HOH . G 6 HOH A 51 351 411 HOH HOH . G 6 HOH A 52 352 413 HOH HOH . G 6 HOH A 53 353 414 HOH HOH . G 6 HOH A 54 354 415 HOH HOH . G 6 HOH A 55 355 417 HOH HOH . G 6 HOH A 56 356 418 HOH HOH . G 6 HOH A 57 357 1 HOH HOH . G 6 HOH A 58 358 2 HOH HOH . G 6 HOH A 59 359 3 HOH HOH . G 6 HOH A 60 360 7 HOH HOH . G 6 HOH A 61 361 1 HOH HOH . G 6 HOH A 62 362 2 HOH HOH . G 6 HOH A 63 363 3 HOH HOH . G 6 HOH A 64 364 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 BB2 . . . C 3 79.322 88.615 53.29 1 17.83 ? C5 BB2 202 A 1 HETATM 2 C C3 BB2 . . . C 3 79.69 87.31 53.955 1 18.2 ? C3 BB2 202 A 1 HETATM 3 O O4 BB2 . . . C 3 79.553 86.238 53.37 1 17.81 ? O4 BB2 202 A 1 HETATM 4 N N1 BB2 . . . C 3 80.164 87.367 55.203 1 19.44 ? N1 BB2 202 A 1 HETATM 5 O O2 BB2 . . . C 3 80.277 86.12 55.849 1 19.49 ? O2 BB2 202 A 1 HETATM 6 C C6 BB2 . . . C 3 77.836 88.898 53.501 1 18.23 ? C6 BB2 202 A 1 HETATM 7 C C12 BB2 . . . C 3 77.413 89.862 52.436 1 17.95 ? C12 BB2 202 A 1 HETATM 8 O O13 BB2 . . . C 3 78.063 90.863 52.213 1 17.19 ? O13 BB2 202 A 1 HETATM 9 C C7 BB2 . . . C 3 77.652 89.605 54.849 1 18.33 ? C7 BB2 202 A 1 HETATM 10 C C8 BB2 . . . C 3 76.229 90.082 55.121 1 21.53 ? C8 BB2 202 A 1 HETATM 11 C C9 BB2 . . . C 3 75.368 89.013 55.753 1 22.11 ? C9 BB2 202 A 1 HETATM 12 C C10 BB2 . . . C 3 74.03 89.539 56.302 1 20.72 ? C10 BB2 202 A 1 HETATM 13 C C11 BB2 . . . C 3 73.206 90.334 55.297 1 21.08 ? C11 BB2 202 A 1 HETATM 14 N N14 BB2 . . . C 3 76.317 89.519 51.768 1 18.96 ? N14 BB2 202 A 1 HETATM 15 C C15 BB2 . . . C 3 75.644 90.421 50.851 1 21.18 ? C15 BB2 202 A 1 HETATM 16 C C16 BB2 . . . C 3 75.717 89.799 49.452 1 24.65 ? C16 BB2 202 A 1 HETATM 17 C C18 BB2 . . . C 3 74.937 90.609 48.428 1 25.69 ? C18 BB2 202 A 1 HETATM 18 C C17 BB2 . . . C 3 77.162 89.614 49.004 1 25.77 ? C17 BB2 202 A 1 HETATM 19 C C19 BB2 . . . C 3 74.215 90.551 51.304 1 22.55 ? C19 BB2 202 A 1 HETATM 20 O O20 BB2 . . . C 3 73.618 89.541 51.638 1 22.9 ? O20 BB2 202 A 1 HETATM 21 N N21 BB2 . . . C 3 73.649 91.757 51.394 1 23.59 ? N21 BB2 202 A 1 HETATM 22 C C22 BB2 . . . C 3 72.293 91.857 51.935 1 24.87 ? C22 BB2 202 A 1 HETATM 23 C C23 BB2 . . . C 3 74.254 93.051 51.082 1 24.88 ? C23 BB2 202 A 1 HETATM 24 C C24 BB2 . . . C 3 73.264 94.085 51.614 1 27.42 ? C24 BB2 202 A 1 HETATM 25 C C25 BB2 . . . C 3 72.183 93.318 52.349 1 26.19 ? C25 BB2 202 A 1 HETATM 26 C C26 BB2 . . . C 3 71.296 91.507 50.821 1 26.3 ? C26 BB2 202 A 1 HETATM 27 O O27 BB2 . . . C 3 69.963 91.693 51.337 1 28.36 ? O27 BB2 202 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #