data_4E9B # _model_server_result.job_id LTKrMQA9TjpNFKplYhJJjQ _model_server_result.datetime_utc '2024-11-13 05:20:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4E9B # _exptl.entry_id 4E9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E9B _cell.length_a 41.394 _cell.length_b 51.779 _cell.length_c 91.074 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 137 A HIS 138 1_555 B CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A NE2 HIS 141 A HIS 142 1_555 B CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 B CO CO . A CO 201 1_555 C O4 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 B CO CO . A CO 201 1_555 C O2 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 154 n n N1 C6 EPE sing 155 n n N1 C9 EPE sing 156 n n C2 C3 EPE sing 157 n n C2 H21 EPE sing 158 n n C2 H22 EPE sing 159 n n C3 N4 EPE sing 160 n n C3 H31 EPE sing 161 n n C3 H32 EPE sing 162 n n N4 C5 EPE sing 163 n n N4 C7 EPE sing 164 n n C5 C6 EPE sing 165 n n C5 H51 EPE sing 166 n n C5 H52 EPE sing 167 n n C6 H61 EPE sing 168 n n C6 H62 EPE sing 169 n n C7 C8 EPE sing 170 n n C7 H71 EPE sing 171 n n C7 H72 EPE sing 172 n n C8 O8 EPE sing 173 n n C8 H81 EPE sing 174 n n C8 H82 EPE sing 175 n n O8 HO8 EPE sing 176 n n C9 C10 EPE sing 177 n n C9 H91 EPE sing 178 n n C9 H92 EPE sing 179 n n C10 S EPE sing 180 n n C10 H101 EPE sing 181 n n C10 H102 EPE sing 182 n n S O1S EPE doub 183 n n S O2S EPE doub 184 n n S O3S EPE sing 185 n n O3S HOS3 EPE sing 186 n n # _atom_sites.entry_id 4E9B _atom_sites.fract_transf_matrix[1][1] 0.024158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 201 300 CO CO . C 3 BB2 A 1 202 401 BB2 BB2 . D 4 EPE A 1 203 552 EPE EPE . E 5 DMS A 1 204 4001 DMS DMS . F 5 DMS A 1 205 4001 DMS DMS . G 6 HOH A 1 301 301 HOH HOH . G 6 HOH A 2 302 303 HOH HOH . G 6 HOH A 3 303 305 HOH HOH . G 6 HOH A 4 304 306 HOH HOH . G 6 HOH A 5 305 307 HOH HOH . G 6 HOH A 6 306 308 HOH HOH . G 6 HOH A 7 307 309 HOH HOH . G 6 HOH A 8 308 311 HOH HOH . G 6 HOH A 9 309 314 HOH HOH . G 6 HOH A 10 310 317 HOH HOH . G 6 HOH A 11 311 318 HOH HOH . G 6 HOH A 12 312 319 HOH HOH . G 6 HOH A 13 313 320 HOH HOH . G 6 HOH A 14 314 321 HOH HOH . G 6 HOH A 15 315 322 HOH HOH . G 6 HOH A 16 316 324 HOH HOH . G 6 HOH A 17 317 326 HOH HOH . G 6 HOH A 18 318 327 HOH HOH . G 6 HOH A 19 319 329 HOH HOH . G 6 HOH A 20 320 331 HOH HOH . G 6 HOH A 21 321 333 HOH HOH . G 6 HOH A 22 322 335 HOH HOH . G 6 HOH A 23 323 336 HOH HOH . G 6 HOH A 24 324 339 HOH HOH . G 6 HOH A 25 325 342 HOH HOH . G 6 HOH A 26 326 345 HOH HOH . G 6 HOH A 27 327 346 HOH HOH . G 6 HOH A 28 328 348 HOH HOH . G 6 HOH A 29 329 349 HOH HOH . G 6 HOH A 30 330 351 HOH HOH . G 6 HOH A 31 331 357 HOH HOH . G 6 HOH A 32 332 360 HOH HOH . G 6 HOH A 33 333 362 HOH HOH . G 6 HOH A 34 334 367 HOH HOH . G 6 HOH A 35 335 369 HOH HOH . G 6 HOH A 36 336 372 HOH HOH . G 6 HOH A 37 337 380 HOH HOH . G 6 HOH A 38 338 382 HOH HOH . G 6 HOH A 39 339 384 HOH HOH . G 6 HOH A 40 340 386 HOH HOH . G 6 HOH A 41 341 391 HOH HOH . G 6 HOH A 42 342 393 HOH HOH . G 6 HOH A 43 343 395 HOH HOH . G 6 HOH A 44 344 400 HOH HOH . G 6 HOH A 45 345 401 HOH HOH . G 6 HOH A 46 346 404 HOH HOH . G 6 HOH A 47 347 405 HOH HOH . G 6 HOH A 48 348 406 HOH HOH . G 6 HOH A 49 349 407 HOH HOH . G 6 HOH A 50 350 409 HOH HOH . G 6 HOH A 51 351 411 HOH HOH . G 6 HOH A 52 352 413 HOH HOH . G 6 HOH A 53 353 414 HOH HOH . G 6 HOH A 54 354 415 HOH HOH . G 6 HOH A 55 355 417 HOH HOH . G 6 HOH A 56 356 418 HOH HOH . G 6 HOH A 57 357 1 HOH HOH . G 6 HOH A 58 358 2 HOH HOH . G 6 HOH A 59 359 3 HOH HOH . G 6 HOH A 60 360 7 HOH HOH . G 6 HOH A 61 361 1 HOH HOH . G 6 HOH A 62 362 2 HOH HOH . G 6 HOH A 63 363 3 HOH HOH . G 6 HOH A 64 364 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 4 81.398 76.474 70.565 1 28.79 ? N1 EPE 203 A 1 HETATM 2 C C2 EPE . . . D 4 81.272 76.6 72.028 1 27.81 ? C2 EPE 203 A 1 HETATM 3 C C3 EPE . . . D 4 82.394 77.439 72.634 1 28.72 ? C3 EPE 203 A 1 HETATM 4 N N4 EPE . . . D 4 82.612 78.731 71.935 1 30.18 ? N4 EPE 203 A 1 HETATM 5 C C5 EPE . . . D 4 82.752 78.639 70.482 1 27.83 ? C5 EPE 203 A 1 HETATM 6 C C6 EPE . . . D 4 81.717 77.721 69.854 1 27.78 ? C6 EPE 203 A 1 HETATM 7 C C7 EPE . . . D 4 83.721 79.572 72.436 1 31.53 ? C7 EPE 203 A 1 HETATM 8 C C8 EPE . . . D 4 83.816 79.552 73.942 1 30.41 ? C8 EPE 203 A 1 HETATM 9 O O8 EPE . . . D 4 84.846 78.612 74.243 1 33.35 ? O8 EPE 203 A 1 HETATM 10 C C9 EPE . . . D 4 80.246 75.748 69.986 1 27.86 ? C9 EPE 203 A 1 HETATM 11 C C10 EPE . . . D 4 79.7 76.33 68.683 1 28.46 ? C10 EPE 203 A 1 HETATM 12 S S EPE . . . D 4 78.74 75.238 67.845 1 27.49 ? S EPE 203 A 1 HETATM 13 O O1S EPE . . . D 4 78.603 73.872 68.297 1 34.2 ? O1S EPE 203 A 1 HETATM 14 O O2S EPE . . . D 4 77.95 75.861 66.814 1 27.33 ? O2S EPE 203 A 1 HETATM 15 O O3S EPE . . . D 4 77.51 75.454 68.87 1 33.31 ? O3S EPE 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 15 #