data_4E9D # _model_server_result.job_id qYjzU2XfjTs-2Tb54sboBg _model_server_result.datetime_utc '2024-11-24 12:34:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4E9D # _exptl.entry_id 4E9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 85.84 _cell.angle_beta 77.21 _cell.angle_gamma 68.24 _cell.entry_id 4E9D _cell.length_a 35.873 _cell.length_b 36.302 _cell.length_c 47.474 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CAU 0OB 1 E 0OB 1 1_555 B N ASP 2 E ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 sing covale ? covale2 B C SER 7 E SER 7 1_555 B N TPO 8 E TPO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 sing covale ? covale3 B C TPO 8 E TPO 8 1_555 B N ALA 9 E ALA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 154 n n C1 C2 GOL sing 155 n n C1 H11 GOL sing 156 n n C1 H12 GOL sing 157 n n O1 HO1 GOL sing 158 n n C2 O2 GOL sing 159 n n C2 C3 GOL sing 160 n n C2 H2 GOL sing 161 n n O2 HO2 GOL sing 162 n n C3 O3 GOL sing 163 n n C3 H31 GOL sing 164 n n C3 H32 GOL sing 165 n n O3 HO3 GOL sing 166 n n # _atom_sites.entry_id 4E9D _atom_sites.fract_transf_matrix[1][1] 0.027876 _atom_sites.fract_transf_matrix[1][2] -0.01113 _atom_sites.fract_transf_matrix[1][3] -0.006445 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029661 _atom_sites.fract_transf_matrix[2][3] 0.000311 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 601 1 GOL GOL . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 3 HOH HOH . D 4 HOH A 3 703 4 HOH HOH . D 4 HOH A 4 704 5 HOH HOH . D 4 HOH A 5 705 6 HOH HOH . D 4 HOH A 6 706 8 HOH HOH . D 4 HOH A 7 707 9 HOH HOH . D 4 HOH A 8 708 10 HOH HOH . D 4 HOH A 9 709 11 HOH HOH . D 4 HOH A 10 710 12 HOH HOH . D 4 HOH A 11 711 13 HOH HOH . D 4 HOH A 12 712 14 HOH HOH . D 4 HOH A 13 713 15 HOH HOH . D 4 HOH A 14 714 16 HOH HOH . D 4 HOH A 15 715 17 HOH HOH . D 4 HOH A 16 716 18 HOH HOH . D 4 HOH A 17 717 20 HOH HOH . D 4 HOH A 18 718 21 HOH HOH . D 4 HOH A 19 719 22 HOH HOH . D 4 HOH A 20 720 23 HOH HOH . D 4 HOH A 21 721 24 HOH HOH . D 4 HOH A 22 722 25 HOH HOH . D 4 HOH A 23 723 26 HOH HOH . D 4 HOH A 24 724 27 HOH HOH . D 4 HOH A 25 725 28 HOH HOH . D 4 HOH A 26 726 29 HOH HOH . D 4 HOH A 27 727 30 HOH HOH . D 4 HOH A 28 728 31 HOH HOH . D 4 HOH A 29 729 32 HOH HOH . E 4 HOH E 1 101 2 HOH HOH . E 4 HOH E 2 102 7 HOH HOH . E 4 HOH E 3 103 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -12.644 -7.492 -10.987 1 21.32 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . C 3 -12.966 -8.514 -11.906 1 21.55 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . C 3 -11.65 -6.517 -11.61 1 21.04 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . C 3 -11.046 -5.756 -10.589 1 21.12 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . C 3 -12.373 -5.582 -12.573 1 20.81 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . C 3 -12.395 -6.156 -13.86 1 20.49 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #