data_4E9F # _model_server_result.job_id 7b72n4ut3s-s8ZVwLrayDg _model_server_result.datetime_utc '2024-12-26 21:15:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 4E9F # _exptl.entry_id 4E9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E9F _cell.length_a 41.07 _cell.length_b 55.84 _cell.length_c 96.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 6 C DG 6 1_555 B P 3DR 7 C 3DR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.656 ? covale ? covale2 B O3' 3DR 7 C 3DR 7 1_555 B P DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? hydrog 'DC-DG PAIR' hydrog1 B N4 DC 1 C DC 1 1_555 C O6 DG 12 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog2 B O2 DC 2 C DC 2 1_555 C N1 DG 11 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DA 3 C DA 3 1_555 C N3 DT 10 D DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 DA 3 C DA 3 1_555 C O4 DT 10 D DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DG 4 C DG 4 1_555 C N3 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N2 DG 4 C DG 4 1_555 C O2 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O6 DG 4 C DG 4 1_555 C N4 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DC 5 C DC 5 1_555 C N1 DG 8 D DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N4 DC 5 C DC 5 1_555 C O6 DG 8 D DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O2 DC 5 C DC 5 1_555 C N2 DG 8 D DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DG 6 C DG 6 1_555 C N3 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N2 DG 6 C DG 6 1_555 C O2 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O6 DG 6 C DG 6 1_555 C N4 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 8 C DG 8 1_555 C N3 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N2 DG 8 C DG 8 1_555 C O2 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O6 DG 8 C DG 8 1_555 C N4 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DC 9 C DC 9 1_555 C N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DC 9 C DC 9 1_555 C O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DC 9 C DC 9 1_555 C N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DA 10 C DA 10 1_555 C N3 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N6 DA 10 C DA 10 1_555 C O4 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 DG 11 C DG 11 1_555 C N3 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 DG 11 C DG 11 1_555 C O2 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 DG 11 C DG 11 1_555 C N4 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N3 DC 12 C DC 12 1_555 C N1 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N4 DC 12 C DC 12 1_555 C O6 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O2 DC 12 C DC 12 1_555 C N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 255 n n C1 C2 EDO sing 256 n n C1 H11 EDO sing 257 n n C1 H12 EDO sing 258 n n O1 HO1 EDO sing 259 n n C2 O2 EDO sing 260 n n C2 H21 EDO sing 261 n n C2 H22 EDO sing 262 n n O2 HO2 EDO sing 263 n n # _atom_sites.entry_id 4E9F _atom_sites.fract_transf_matrix[1][1] 0.024349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO C 1 101 1003 EDO EGL . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 3 HOH HOH . E 5 HOH A 4 604 4 HOH HOH . E 5 HOH A 5 605 5 HOH HOH . E 5 HOH A 6 606 6 HOH HOH . E 5 HOH A 7 607 7 HOH HOH . E 5 HOH A 8 608 8 HOH HOH . E 5 HOH A 9 609 10 HOH HOH . E 5 HOH A 10 610 11 HOH HOH . E 5 HOH A 11 611 12 HOH HOH . E 5 HOH A 12 612 13 HOH HOH . E 5 HOH A 13 613 15 HOH HOH . E 5 HOH A 14 614 16 HOH HOH . E 5 HOH A 15 615 17 HOH HOH . E 5 HOH A 16 616 18 HOH HOH . E 5 HOH A 17 617 19 HOH HOH . E 5 HOH A 18 618 20 HOH HOH . E 5 HOH A 19 619 21 HOH HOH . E 5 HOH A 20 620 22 HOH HOH . E 5 HOH A 21 621 23 HOH HOH . E 5 HOH A 22 622 24 HOH HOH . E 5 HOH A 23 623 25 HOH HOH . E 5 HOH A 24 624 26 HOH HOH . E 5 HOH A 25 625 27 HOH HOH . E 5 HOH A 26 626 28 HOH HOH . E 5 HOH A 27 627 29 HOH HOH . E 5 HOH A 28 628 30 HOH HOH . E 5 HOH A 29 629 31 HOH HOH . E 5 HOH A 30 630 32 HOH HOH . E 5 HOH A 31 631 35 HOH HOH . E 5 HOH A 32 632 36 HOH HOH . E 5 HOH A 33 633 37 HOH HOH . E 5 HOH A 34 634 39 HOH HOH . E 5 HOH A 35 635 40 HOH HOH . E 5 HOH A 36 636 41 HOH HOH . E 5 HOH A 37 637 42 HOH HOH . E 5 HOH A 38 638 43 HOH HOH . E 5 HOH A 39 639 44 HOH HOH . E 5 HOH A 40 640 45 HOH HOH . E 5 HOH A 41 641 46 HOH HOH . E 5 HOH A 42 642 53 HOH HOH . E 5 HOH A 43 643 54 HOH HOH . E 5 HOH A 44 644 56 HOH HOH . E 5 HOH A 45 645 57 HOH HOH . E 5 HOH A 46 646 58 HOH HOH . E 5 HOH A 47 647 59 HOH HOH . E 5 HOH A 48 648 62 HOH HOH . E 5 HOH A 49 649 64 HOH HOH . E 5 HOH A 50 650 65 HOH HOH . E 5 HOH A 51 651 66 HOH HOH . E 5 HOH A 52 652 71 HOH HOH . E 5 HOH A 53 653 80 HOH HOH . E 5 HOH A 54 654 81 HOH HOH . E 5 HOH A 55 655 82 HOH HOH . E 5 HOH A 56 656 85 HOH HOH . E 5 HOH A 57 657 87 HOH HOH . E 5 HOH A 58 658 89 HOH HOH . E 5 HOH A 59 659 90 HOH HOH . E 5 HOH A 60 660 93 HOH HOH . E 5 HOH A 61 661 97 HOH HOH . E 5 HOH A 62 662 98 HOH HOH . E 5 HOH A 63 663 103 HOH HOH . E 5 HOH A 64 664 105 HOH HOH . F 5 HOH C 1 201 9 HOH HOH . F 5 HOH C 2 202 38 HOH HOH . F 5 HOH C 3 203 47 HOH HOH . F 5 HOH C 4 204 48 HOH HOH . F 5 HOH C 5 205 67 HOH HOH . F 5 HOH C 6 206 88 HOH HOH . F 5 HOH C 7 207 91 HOH HOH . F 5 HOH C 8 208 92 HOH HOH . F 5 HOH C 9 209 107 HOH HOH . G 5 HOH D 1 101 14 HOH HOH . G 5 HOH D 2 102 68 HOH HOH . G 5 HOH D 3 103 69 HOH HOH . G 5 HOH D 4 104 72 HOH HOH . G 5 HOH D 5 105 77 HOH HOH . G 5 HOH D 6 106 78 HOH HOH . G 5 HOH D 7 107 79 HOH HOH . G 5 HOH D 8 108 86 HOH HOH . G 5 HOH D 9 109 95 HOH HOH . G 5 HOH D 10 110 99 HOH HOH . G 5 HOH D 11 111 104 HOH HOH . G 5 HOH D 12 112 106 HOH HOH . G 5 HOH D 13 113 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 7.207 11.713 -10.777 1 82.82 ? C1 EDO 101 C 1 HETATM 2 O O1 EDO . . . D 4 7.744 11.495 -12.032 1 83.56 ? O1 EDO 101 C 1 HETATM 3 C C2 EDO . . . D 4 6.331 10.653 -10.195 1 82.04 ? C2 EDO 101 C 1 HETATM 4 O O2 EDO . . . D 4 6.242 9.453 -10.872 1 81.55 ? O2 EDO 101 C 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #