data_4EA1 # _model_server_result.job_id ZWVpnTsbkysUADAf4w3New _model_server_result.datetime_utc '2024-11-22 07:32:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ea1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4EA1 # _exptl.entry_id 4EA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4EA1 _cell.length_a 80.615 _cell.length_b 80.615 _cell.length_c 91.604 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H38 N2' _chem_comp.formula_weight 330.551 _chem_comp.id 3RX _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAR CAA 3RX sing 1 n n CAA HAA 3RX sing 2 n n CAA HAAA 3RX sing 3 n n CAA HAAB 3RX sing 4 n n CAB CAR 3RX sing 5 n n CAB HAB 3RX sing 6 n n CAB HABA 3RX sing 7 n n CAB HABB 3RX sing 8 n n CAS CAC 3RX sing 9 n n CAC HAC 3RX sing 10 n n CAC HACA 3RX sing 11 n n CAC HACB 3RX sing 12 n n CAR CAD 3RX doub 13 e n CAF CAD 3RX sing 14 n n CAD HAD 3RX sing 15 n n CAE CAG 3RX sing 16 n n CAE CAS 3RX doub 17 n n CAE HAE 3RX sing 18 n n CAF CAJ 3RX sing 19 n n CAF HAF 3RX sing 20 n n CAF HAFA 3RX sing 21 n n CAG NAP 3RX sing 22 n n CAG HAG 3RX sing 23 n n CAG HAGA 3RX sing 24 n n CAH CAI 3RX sing 25 n n CAH NAP 3RX sing 26 n n CAH HAH 3RX sing 27 n n CAH HAHA 3RX sing 28 n n NAQ CAI 3RX sing 29 n n CAI HAI 3RX sing 30 n n CAI HAIA 3RX sing 31 n n CAS CAJ 3RX sing 32 n n CAJ HAJ 3RX sing 33 n n CAJ HAJA 3RX sing 34 n n CAU CAK 3RX sing 35 n n CAK CAT 3RX sing 36 n n CAK HAK 3RX sing 37 n n CAK HAKA 3RX sing 38 n n CAV CAL 3RX sing 39 n n CAT CAL 3RX sing 40 n n CAL HAL 3RX sing 41 n n CAL HALA 3RX sing 42 n n CAU CAM 3RX sing 43 n n CAM CAV 3RX sing 44 n n CAM HAM 3RX sing 45 n n CAM HAMA 3RX sing 46 n n CAW CAN 3RX sing 47 n n CAN CAT 3RX sing 48 n n CAN HAN 3RX sing 49 n n CAN HANA 3RX sing 50 n n CAO CAU 3RX sing 51 n n CAO CAW 3RX sing 52 n n CAO HAO 3RX sing 53 n n CAO HAOA 3RX sing 54 n n NAP HNAP 3RX sing 55 n n NAQ CAX 3RX sing 56 n n NAQ HNAQ 3RX sing 57 n n CAT HAT 3RX sing 58 n n CAU HAU 3RX sing 59 n n CAX CAV 3RX sing 60 n n CAV HAV 3RX sing 61 n n CAW CAX 3RX sing 62 n n CAW HAW 3RX sing 63 n n CAX HAX 3RX sing 64 n n # _atom_sites.entry_id 4EA1 _atom_sites.fract_transf_matrix[1][1] 0.012405 _atom_sites.fract_transf_matrix[1][2] 0.007162 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3RX A 1 301 288 3RX 3RX . C 3 HOH A 1 401 290 HOH HOH . C 3 HOH A 2 402 291 HOH HOH . C 3 HOH A 3 403 292 HOH HOH . C 3 HOH A 4 404 293 HOH HOH . C 3 HOH A 5 405 294 HOH HOH . C 3 HOH A 6 406 295 HOH HOH . C 3 HOH A 7 407 296 HOH HOH . C 3 HOH A 8 408 297 HOH HOH . C 3 HOH A 9 409 298 HOH HOH . C 3 HOH A 10 410 299 HOH HOH . C 3 HOH A 11 411 300 HOH HOH . C 3 HOH A 12 412 301 HOH HOH . C 3 HOH A 13 413 302 HOH HOH . C 3 HOH A 14 414 303 HOH HOH . C 3 HOH A 15 415 304 HOH HOH . C 3 HOH A 16 416 305 HOH HOH . C 3 HOH A 17 417 306 HOH HOH . C 3 HOH A 18 418 307 HOH HOH . C 3 HOH A 19 419 308 HOH HOH . C 3 HOH A 20 420 309 HOH HOH . C 3 HOH A 21 421 310 HOH HOH . C 3 HOH A 22 422 311 HOH HOH . C 3 HOH A 23 423 312 HOH HOH . C 3 HOH A 24 424 313 HOH HOH . C 3 HOH A 25 425 314 HOH HOH . C 3 HOH A 26 426 315 HOH HOH . C 3 HOH A 27 427 316 HOH HOH . C 3 HOH A 28 428 317 HOH HOH . C 3 HOH A 29 429 318 HOH HOH . C 3 HOH A 30 430 319 HOH HOH . C 3 HOH A 31 431 320 HOH HOH . C 3 HOH A 32 432 321 HOH HOH . C 3 HOH A 33 433 322 HOH HOH . C 3 HOH A 34 434 323 HOH HOH . C 3 HOH A 35 435 324 HOH HOH . C 3 HOH A 36 436 325 HOH HOH . C 3 HOH A 37 437 326 HOH HOH . C 3 HOH A 38 438 327 HOH HOH . C 3 HOH A 39 439 328 HOH HOH . C 3 HOH A 40 440 329 HOH HOH . C 3 HOH A 41 441 330 HOH HOH . C 3 HOH A 42 442 331 HOH HOH . C 3 HOH A 43 443 332 HOH HOH . C 3 HOH A 44 444 333 HOH HOH . C 3 HOH A 45 445 334 HOH HOH . C 3 HOH A 46 446 335 HOH HOH . C 3 HOH A 47 447 336 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3RX . A . B 2 4.036 -29.911 8.419 0.5 9.38 ? CAA 3RX 301 A 1 HETATM 2 C CAA 3RX . B . B 2 -0.441 -32.003 3.682 0.5 9.42 ? CAA 3RX 301 A 1 HETATM 3 C CAB 3RX . A . B 2 2.58 -28.781 6.586 0.5 17.18 ? CAB 3RX 301 A 1 HETATM 4 C CAB 3RX . B . B 2 0.228 -29.495 3.794 0.5 9.13 ? CAB 3RX 301 A 1 HETATM 5 C CAC 3RX . A . B 2 -1.194 -25.942 9.292 0.5 20.71 ? CAC 3RX 301 A 1 HETATM 6 C CAC 3RX . B . B 2 -5.43 -29.489 5.762 0.5 10.57 ? CAC 3RX 301 A 1 HETATM 7 C CAD 3RX . A . B 2 1.667 -29.126 8.749 0.5 7.26 ? CAD 3RX 301 A 1 HETATM 8 C CAD 3RX . B . B 2 -1.942 -30.407 4.791 0.5 16.08 ? CAD 3RX 301 A 1 HETATM 9 C CAE 3RX . A . B 2 -2.876 -27.861 9.193 0.5 24.84 ? CAE 3RX 301 A 1 HETATM 10 C CAE 3RX . B . B 2 -4.717 -30.712 7.867 0.5 16.18 ? CAE 3RX 301 A 1 HETATM 11 C CAF 3RX . A . B 2 0.548 -28.505 8.264 0.5 16.64 ? CAF 3RX 301 A 1 HETATM 12 C CAF 3RX . B . B 2 -2.499 -29.239 5.268 0.5 21.25 ? CAF 3RX 301 A 1 HETATM 13 C CAG 3RX . A . B 2 -4.092 -27.209 9.223 0.5 30.37 ? CAG 3RX 301 A 1 HETATM 14 C CAG 3RX . B . B 2 -5.89 -31.323 8.229 0.5 21.45 ? CAG 3RX 301 A 1 HETATM 15 C CAH 3RX . A . B 2 -6.329 -27.883 9.895 0.5 44.13 ? CAH 3RX 301 A 1 HETATM 16 C CAH 3RX . B . B 2 -6.04 -29.375 9.739 0.5 25.41 ? CAH 3RX 301 A 1 HETATM 17 C CAI 3RX . A . B 2 -6.972 -29.241 10.149 0.5 51.87 ? CAI 3RX 301 A 1 HETATM 18 C CAI 3RX . B . B 2 -7.108 -28.457 10.299 0.5 29.23 ? CAI 3RX 301 A 1 HETATM 19 C CAJ 3RX . A . B 2 -0.535 -28.54 9.28 0.5 11.73 ? CAJ 3RX 301 A 1 HETATM 20 C CAJ 3RX . B . B 2 -2.994 -29.385 6.682 0.5 21.67 ? CAJ 3RX 301 A 1 HETATM 21 C CAK 3RX . A . B 2 -12.536 -28.106 11.835 0.5 65.62 ? CAK 3RX 301 A 1 HETATM 22 C CAK 3RX . B . B 2 -12.612 -28.108 11.774 0.5 40.67 ? CAK 3RX 301 A 1 HETATM 23 C CAL 3RX . A . B 2 -10.77 -29.218 13.156 0.5 65.41 ? CAL 3RX 301 A 1 HETATM 24 C CAL 3RX . B . B 2 -10.922 -29.153 13.231 0.5 38.69 ? CAL 3RX 301 A 1 HETATM 25 C CAM 3RX . A . B 2 -11.234 -29.957 10.889 0.5 64.04 ? CAM 3RX 301 A 1 HETATM 26 C CAM 3RX . B . B 2 -11.279 -30.009 10.981 0.5 40.31 ? CAM 3RX 301 A 1 HETATM 27 C CAN 3RX . A . B 2 -10.452 -26.911 12.341 0.5 66.43 ? CAN 3RX 301 A 1 HETATM 28 C CAN 3RX . B . B 2 -10.554 -26.877 12.295 0.5 39.61 ? CAN 3RX 301 A 1 HETATM 29 C CAO 3RX . A . B 2 -10.837 -27.729 10.039 0.5 66.77 ? CAO 3RX 301 A 1 HETATM 30 C CAO 3RX . B . B 2 -10.845 -27.825 10.027 0.5 38.1 ? CAO 3RX 301 A 1 HETATM 31 N NAP 3RX . A . B 2 -4.9 -27.969 10.181 0.5 36.06 ? NAP 3RX 301 A 1 HETATM 32 N NAP 3RX . B . B 2 -6.72 -30.486 9.082 0.5 22.4 ? NAP 3RX 301 A 1 HETATM 33 N NAQ 3RX . A . B 2 -8.447 -29.133 10.139 0.5 58.18 ? NAQ 3RX 301 A 1 HETATM 34 N NAQ 3RX . B . B 2 -8.359 -29.22 10.453 0.5 33.56 ? NAQ 3RX 301 A 1 HETATM 35 C CAR 3RX . A . B 2 2.744 -29.302 7.958 0.5 7.93 ? CAR 3RX 301 A 1 HETATM 36 C CAR 3RX . B . B 2 -0.755 -30.604 4.109 0.5 11.9 ? CAR 3RX 301 A 1 HETATM 37 C CAS 3RX . A . B 2 -1.559 -27.417 9.225 0.5 20.62 ? CAS 3RX 301 A 1 HETATM 38 C CAS 3RX . B . B 2 -4.413 -29.903 6.79 0.5 21.47 ? CAS 3RX 301 A 1 HETATM 39 C CAT 3RX . A . B 2 -11.456 -27.905 12.868 0.5 66.66 ? CAT 3RX 301 A 1 HETATM 40 C CAT 3RX . B . B 2 -11.577 -27.848 12.837 0.5 42.74 ? CAT 3RX 301 A 1 HETATM 41 C CAU 3RX . A . B 2 -11.897 -28.66 10.577 0.5 66.39 ? CAU 3RX 301 A 1 HETATM 42 C CAU 3RX . B . B 2 -11.925 -28.729 10.574 0.5 38.04 ? CAU 3RX 301 A 1 HETATM 43 C CAV 3RX . A . B 2 -10.111 -29.692 11.884 0.5 63.59 ? CAV 3RX 301 A 1 HETATM 44 C CAV 3RX . B . B 2 -10.212 -29.693 12.021 0.5 39.71 ? CAV 3RX 301 A 1 HETATM 45 C CAW 3RX . A . B 2 -9.797 -27.445 11.091 0.5 65.76 ? CAW 3RX 301 A 1 HETATM 46 C CAW 3RX . B . B 2 -9.852 -27.477 11.105 0.5 38.45 ? CAW 3RX 301 A 1 HETATM 47 C CAX 3RX . A . B 2 -9.079 -28.701 11.387 0.5 62.82 ? CAX 3RX 301 A 1 HETATM 48 C CAX 3RX . B . B 2 -9.173 -28.706 11.543 0.5 37.39 ? CAX 3RX 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #