data_4EA2 # _model_server_result.job_id 3moeSbJIN3mwyPXUScW4Ow _model_server_result.datetime_utc '2024-11-02 05:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ea2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4EA2 # _exptl.entry_id 4EA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(2Z)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4EA2 _cell.length_a 80.146 _cell.length_b 80.146 _cell.length_c 90.861 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 303 1_555 E O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.548 ? metalc ? metalc2 D MG MG . A MG 303 1_555 E O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C22 H38 N2' _chem_comp.formula_weight 330.551 _chem_comp.id RWZ _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(2Z)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAR RWZ sing 277 n n CAA HAA RWZ sing 278 n n CAA HAAA RWZ sing 279 n n CAA HAAB RWZ sing 280 n n CAR CAB RWZ sing 281 n n CAB HAB RWZ sing 282 n n CAB HABA RWZ sing 283 n n CAB HABB RWZ sing 284 n n CAC CAS RWZ sing 285 n n CAC HAC RWZ sing 286 n n CAC HACA RWZ sing 287 n n CAC HACB RWZ sing 288 n n CAD CAF RWZ sing 289 n n CAD CAR RWZ doub 290 n n CAD HAD RWZ sing 291 n n CAE CAG RWZ sing 292 z n CAE CAS RWZ doub 293 n n CAE HAE RWZ sing 294 n n CAJ CAF RWZ sing 295 n n CAF HAF RWZ sing 296 n n CAF HAFA RWZ sing 297 n n CAG NAP RWZ sing 298 n n CAG HAG RWZ sing 299 n n CAG HAGA RWZ sing 300 n n CAH NAP RWZ sing 301 n n CAH CAI RWZ sing 302 n n CAH HAH RWZ sing 303 n n CAH HAHA RWZ sing 304 n n NAQ CAI RWZ sing 305 n n CAI HAI RWZ sing 306 n n CAI HAIA RWZ sing 307 n n CAS CAJ RWZ sing 308 n n CAJ HAJ RWZ sing 309 n n CAJ HAJA RWZ sing 310 n n CAU CAK RWZ sing 311 n n CAT CAK RWZ sing 312 n n CAK HAK RWZ sing 313 n n CAK HAKA RWZ sing 314 n n CAV CAL RWZ sing 315 n n CAL CAT RWZ sing 316 n n CAL HAL RWZ sing 317 n n CAL HALA RWZ sing 318 n n CAV CAM RWZ sing 319 n n CAM CAU RWZ sing 320 n n CAM HAM RWZ sing 321 n n CAM HAMA RWZ sing 322 n n CAW CAN RWZ sing 323 n n CAT CAN RWZ sing 324 n n CAN HAN RWZ sing 325 n n CAN HANA RWZ sing 326 n n CAW CAO RWZ sing 327 n n CAU CAO RWZ sing 328 n n CAO HAO RWZ sing 329 n n CAO HAOA RWZ sing 330 n n NAP HNAP RWZ sing 331 n n NAQ CAX RWZ sing 332 n n NAQ HNAQ RWZ sing 333 n n CAT HAT RWZ sing 334 n n CAU HAU RWZ sing 335 n n CAV CAX RWZ sing 336 n n CAV HAV RWZ sing 337 n n CAX CAW RWZ sing 338 n n CAW HAW RWZ sing 339 n n CAX HAX RWZ sing 340 n n # _atom_sites.entry_id 4EA2 _atom_sites.fract_transf_matrix[1][1] 0.012477 _atom_sites.fract_transf_matrix[1][2] 0.007204 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RWZ A 1 301 288 RWZ RWZ . C 3 SRT A 1 302 289 SRT SRT . D 4 MG A 1 303 290 MG MG . E 5 HOH A 1 401 291 HOH HOH . E 5 HOH A 2 402 292 HOH HOH . E 5 HOH A 3 403 293 HOH HOH . E 5 HOH A 4 404 294 HOH HOH . E 5 HOH A 5 405 295 HOH HOH . E 5 HOH A 6 406 296 HOH HOH . E 5 HOH A 7 407 297 HOH HOH . E 5 HOH A 8 408 298 HOH HOH . E 5 HOH A 9 409 299 HOH HOH . E 5 HOH A 10 410 300 HOH HOH . E 5 HOH A 11 411 301 HOH HOH . E 5 HOH A 12 412 302 HOH HOH . E 5 HOH A 13 413 303 HOH HOH . E 5 HOH A 14 414 304 HOH HOH . E 5 HOH A 15 415 305 HOH HOH . E 5 HOH A 16 416 306 HOH HOH . E 5 HOH A 17 417 307 HOH HOH . E 5 HOH A 18 418 308 HOH HOH . E 5 HOH A 19 419 309 HOH HOH . E 5 HOH A 20 420 310 HOH HOH . E 5 HOH A 21 421 311 HOH HOH . E 5 HOH A 22 422 312 HOH HOH . E 5 HOH A 23 423 313 HOH HOH . E 5 HOH A 24 424 314 HOH HOH . E 5 HOH A 25 425 315 HOH HOH . E 5 HOH A 26 426 316 HOH HOH . E 5 HOH A 27 427 317 HOH HOH . E 5 HOH A 28 428 318 HOH HOH . E 5 HOH A 29 429 319 HOH HOH . E 5 HOH A 30 430 320 HOH HOH . E 5 HOH A 31 431 321 HOH HOH . E 5 HOH A 32 432 322 HOH HOH . E 5 HOH A 33 433 323 HOH HOH . E 5 HOH A 34 434 324 HOH HOH . E 5 HOH A 35 435 325 HOH HOH . E 5 HOH A 36 436 326 HOH HOH . E 5 HOH A 37 437 327 HOH HOH . E 5 HOH A 38 438 328 HOH HOH . E 5 HOH A 39 439 329 HOH HOH . E 5 HOH A 40 440 330 HOH HOH . E 5 HOH A 41 441 331 HOH HOH . E 5 HOH A 42 442 332 HOH HOH . E 5 HOH A 43 443 333 HOH HOH . E 5 HOH A 44 444 334 HOH HOH . E 5 HOH A 45 445 335 HOH HOH . E 5 HOH A 46 446 336 HOH HOH . E 5 HOH A 47 447 337 HOH HOH . E 5 HOH A 48 448 338 HOH HOH . E 5 HOH A 49 449 339 HOH HOH . E 5 HOH A 50 450 340 HOH HOH . E 5 HOH A 51 451 341 HOH HOH . E 5 HOH A 52 452 342 HOH HOH . E 5 HOH A 53 453 343 HOH HOH . E 5 HOH A 54 454 344 HOH HOH . E 5 HOH A 55 455 345 HOH HOH . E 5 HOH A 56 456 346 HOH HOH . E 5 HOH A 57 457 347 HOH HOH . E 5 HOH A 58 458 348 HOH HOH . E 5 HOH A 59 459 349 HOH HOH . E 5 HOH A 60 460 350 HOH HOH . E 5 HOH A 61 461 351 HOH HOH . E 5 HOH A 62 462 352 HOH HOH . E 5 HOH A 63 463 353 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA RWZ . . . B 2 -28.177 -10.554 -7.89 1 55.51 ? CAA RWZ 301 A 1 HETATM 2 C CAB RWZ . . . B 2 -26.173 -11.039 -6.292 1 62.52 ? CAB RWZ 301 A 1 HETATM 3 C CAC RWZ . . . B 2 -24.653 -15.733 -8.815 1 73.56 ? CAC RWZ 301 A 1 HETATM 4 C CAD RWZ . . . B 2 -26.743 -12.627 -8.054 1 56.66 ? CAD RWZ 301 A 1 HETATM 5 C CAE RWZ . . . B 2 -22.424 -14.693 -8.884 1 71.2 ? CAE RWZ 301 A 1 HETATM 6 C CAF RWZ . . . B 2 -25.723 -13.457 -7.663 1 66.96 ? CAF RWZ 301 A 1 HETATM 7 C CAG RWZ . . . B 2 -21.468 -13.722 -8.82 1 72.44 ? CAG RWZ 301 A 1 HETATM 8 C CAH RWZ . . . B 2 -20.121 -15.631 -8.275 1 74.16 ? CAH RWZ 301 A 1 HETATM 9 C CAI RWZ . . . B 2 -21.315 -16.398 -7.814 1 73.49 ? CAI RWZ 301 A 1 HETATM 10 C CAJ RWZ . . . B 2 -24.435 -13.216 -8.424 1 66.36 ? CAJ RWZ 301 A 1 HETATM 11 C CAK RWZ . . . B 2 -23.14 -20.218 -5.924 1 76.48 ? CAK RWZ 301 A 1 HETATM 12 C CAL RWZ . . . B 2 -21.711 -19.943 -7.903 1 78.9 ? CAL RWZ 301 A 1 HETATM 13 C CAM RWZ . . . B 2 -24.102 -20.031 -8.194 1 75.37 ? CAM RWZ 301 A 1 HETATM 14 C CAN RWZ . . . B 2 -21.971 -18.074 -6.248 1 78.62 ? CAN RWZ 301 A 1 HETATM 15 C CAO RWZ . . . B 2 -24.389 -18.213 -6.492 1 76.62 ? CAO RWZ 301 A 1 HETATM 16 N NAP RWZ . . . B 2 -20.352 -14.22 -8.031 1 78.7 ? NAP RWZ 301 A 1 HETATM 17 N NAQ RWZ . . . B 2 -21.698 -17.276 -8.897 1 76.04 ? NAQ RWZ 301 A 1 HETATM 18 C CAR RWZ . . . B 2 -27.042 -11.449 -7.437 1 56.44 ? CAR RWZ 301 A 1 HETATM 19 C CAS RWZ . . . B 2 -23.775 -14.532 -8.717 1 69.3 ? CAS RWZ 301 A 1 HETATM 20 C CAT RWZ . . . B 2 -21.884 -19.583 -6.435 1 76.93 ? CAT RWZ 301 A 1 HETATM 21 C CAU RWZ . . . B 2 -24.299 -19.698 -6.729 1 73.88 ? CAU RWZ 301 A 1 HETATM 22 C CAV RWZ . . . B 2 -22.853 -19.372 -8.71 1 76.19 ? CAV RWZ 301 A 1 HETATM 23 C CAW RWZ . . . B 2 -23.145 -17.545 -7.031 1 78.16 ? CAW RWZ 301 A 1 HETATM 24 C CAX RWZ . . . B 2 -22.947 -17.878 -8.497 1 77.75 ? CAX RWZ 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 24 #