data_4EA3 # _model_server_result.job_id AXSQqoBDO0o5B8OwHseq8Q _model_server_result.datetime_utc '2024-11-26 08:33:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ea3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1501}' # _entry.id 4EA3 # _exptl.entry_id 4EA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.586 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1-benzyl-N-[3-(1'H,3H-spiro[2-benzofuran-1,4'-piperidin]-1'-yl)propyl]-D-prolinamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.14 _cell.angle_gamma 90 _cell.entry_id 4EA3 _cell.length_a 42.106 _cell.length_b 170.939 _cell.length_c 65.353 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 1 2 A,C,D,E,H 2 1 B,F,G,I 2 3 A,B,C,D,E,F,G,H,I 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 14.856777 0 -63.641895 3 'crystal symmetry operation' 1_454 x-1,y,z-1 1 0 0 0 1 0 0 0 1 -27.249223 0 -63.641895 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 123 1_555 A SG CYS 274 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 B SG CYS 197 B CYS 123 1_555 B SG CYS 274 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H35 N3 O2' _chem_comp.formula_weight 433.586 _chem_comp.id 0NN _chem_comp.mon_nstd_flag . _chem_comp.name "1-benzyl-N-[3-(1'H,3H-spiro[2-benzofuran-1,4'-piperidin]-1'-yl)propyl]-D-prolinamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 0NN doub 1 n y C4 C3 0NN sing 2 n y C5 C6 0NN sing 3 n y C3 C2 0NN doub 4 n y C6 C7 0NN sing 5 n n C6 C1 0NN doub 6 n y C7 O1 0NN sing 7 n n C2 C1 0NN sing 8 n y C1 C8 0NN sing 9 n n O1 C8 0NN sing 10 n n C8 C9 0NN sing 11 n n C8 C11 0NN sing 12 n n C9 C10 0NN sing 13 n n C11 C12 0NN sing 14 n n C10 N1 0NN sing 15 n n C12 N1 0NN sing 16 n n N1 C13 0NN sing 17 n n C25 C24 0NN doub 18 n y C25 C26 0NN sing 19 n y C24 C23 0NN sing 20 n y C13 C14 0NN sing 21 n n C26 C27 0NN doub 22 n y C14 C15 0NN sing 23 n n C23 C22 0NN doub 24 n y O2 C16 0NN doub 25 n n C27 C22 0NN sing 26 n y C22 C21 0NN sing 27 n n C15 N2 0NN sing 28 n n C16 N2 0NN sing 29 n n C16 C17 0NN sing 30 n n C21 N3 0NN sing 31 n n C17 N3 0NN sing 32 n n C17 C18 0NN sing 33 n n N3 C20 0NN sing 34 n n C18 C19 0NN sing 35 n n C20 C19 0NN sing 36 n n C4 H1 0NN sing 37 n n C3 H2 0NN sing 38 n n C2 H3 0NN sing 39 n n C10 H5 0NN sing 40 n n C10 H6 0NN sing 41 n n C11 H7 0NN sing 42 n n C11 H8 0NN sing 43 n n C12 H9 0NN sing 44 n n C12 H10 0NN sing 45 n n C13 H11 0NN sing 46 n n C13 H12 0NN sing 47 n n C14 H13 0NN sing 48 n n C14 H14 0NN sing 49 n n C15 H15 0NN sing 50 n n C15 H16 0NN sing 51 n n C17 H17 0NN sing 52 n n C18 H18 0NN sing 53 n n C18 H19 0NN sing 54 n n C19 H20 0NN sing 55 n n C19 H21 0NN sing 56 n n N2 H22 0NN sing 57 n n C20 H23 0NN sing 58 n n C20 H24 0NN sing 59 n n C21 H25 0NN sing 60 n n C21 H26 0NN sing 61 n n C23 H27 0NN sing 62 n n C24 H28 0NN sing 63 n n C25 H29 0NN sing 64 n n C26 H30 0NN sing 65 n n C27 H31 0NN sing 66 n n C5 H33 0NN sing 67 n n C7 H34 0NN sing 68 n n C7 H35 0NN sing 69 n n C9 H36 0NN sing 70 n n C9 H37 0NN sing 71 n n # _atom_sites.entry_id 4EA3 _atom_sites.fract_transf_matrix[1][1] 0.02375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005544 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0NN A 1 1501 500 0NN 0NN . D 3 OLB A 1 1502 501 OLB OLB . E 4 OLA A 1 1503 502 OLA OLA . F 2 0NN B 1 1501 500 0NN 0NN . G 5 OLC B 1 1502 501 OLC OLC . H 6 HOH A 1 1601 503 HOH HOH . H 6 HOH A 2 1602 504 HOH HOH . H 6 HOH A 3 1603 505 HOH HOH . H 6 HOH A 4 1604 506 HOH HOH . H 6 HOH A 5 1605 507 HOH HOH . H 6 HOH A 6 1606 508 HOH HOH . I 6 HOH B 1 1601 502 HOH HOH . I 6 HOH B 2 1602 503 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 0NN . . . F 2 14.006 -43.126 44.162 1 69.85 ? C4 0NN 1501 B 1 HETATM 2 C C3 0NN . . . F 2 13.188 -43.376 42.938 1 71.16 ? C3 0NN 1501 B 1 HETATM 3 C C2 0NN . . . F 2 13.672 -43.006 41.7 1 71.48 ? C2 0NN 1501 B 1 HETATM 4 O O2 0NN . . . F 2 16.446 -36.741 34.471 1 67.8 ? O2 0NN 1501 B 1 HETATM 5 C C1 0NN . . . F 2 15.027 -42.349 41.576 1 69.66 ? C1 0NN 1501 B 1 HETATM 6 O O1 0NN . . . F 2 17.077 -41.579 40.879 1 65.29 ? O1 0NN 1501 B 1 HETATM 7 N N1 0NN . . . F 2 16.264 -41.067 37.553 1 54.84 ? N1 0NN 1501 B 1 HETATM 8 C C10 0NN . . . F 2 16.36 -40.006 38.607 1 51.14 ? C10 0NN 1501 B 1 HETATM 9 C C11 0NN . . . F 2 15.831 -42.813 39.216 1 65.01 ? C11 0NN 1501 B 1 HETATM 10 C C12 0NN . . . F 2 16.711 -42.348 38.098 1 60.73 ? C12 0NN 1501 B 1 HETATM 11 C C13 0NN . . . F 2 17.073 -40.686 36.409 1 51.48 ? C13 0NN 1501 B 1 HETATM 12 C C14 0NN . . . F 2 16.235 -40.027 35.331 1 53.1 ? C14 0NN 1501 B 1 HETATM 13 C C15 0NN . . . F 2 17.162 -39.432 34.281 1 58.39 ? C15 0NN 1501 B 1 HETATM 14 C C16 0NN . . . F 2 16.093 -37.287 33.443 1 63.49 ? C16 0NN 1501 B 1 HETATM 15 C C17 0NN . . . F 2 15.325 -36.463 32.373 1 61.52 ? C17 0NN 1501 B 1 HETATM 16 C C18 0NN . . . F 2 16.26 -35.914 31.363 1 62.56 ? C18 0NN 1501 B 1 HETATM 17 C C19 0NN . . . F 2 15.85 -36.473 30.032 1 61.22 ? C19 0NN 1501 B 1 HETATM 18 N N2 0NN . . . F 2 16.42 -38.706 33.233 1 60.23 ? N2 0NN 1501 B 1 HETATM 19 C C20 0NN . . . F 2 14.905 -37.617 30.358 1 60.64 ? C20 0NN 1501 B 1 HETATM 20 C C21 0NN . . . F 2 13.621 -38.29 32.32 1 57.64 ? C21 0NN 1501 B 1 HETATM 21 C C22 0NN . . . F 2 13.235 -37.939 33.766 1 53.32 ? C22 0NN 1501 B 1 HETATM 22 C C23 0NN . . . F 2 13.173 -38.939 34.702 1 51.59 ? C23 0NN 1501 B 1 HETATM 23 C C24 0NN . . . F 2 12.795 -38.613 36.127 1 53.5 ? C24 0NN 1501 B 1 HETATM 24 C C25 0NN . . . F 2 12.514 -37.325 36.483 1 50.59 ? C25 0NN 1501 B 1 HETATM 25 C C26 0NN . . . F 2 12.58 -36.226 35.455 1 50.29 ? C26 0NN 1501 B 1 HETATM 26 C C27 0NN . . . F 2 12.921 -36.52 34.158 1 52.55 ? C27 0NN 1501 B 1 HETATM 27 N N3 0NN . . . F 2 14.303 -37.179 31.615 1 59.24 ? N3 0NN 1501 B 1 HETATM 28 C C5 0NN . . . F 2 15.242 -42.526 44.049 1 70.36 ? C5 0NN 1501 B 1 HETATM 29 C C6 0NN . . . F 2 15.771 -42.122 42.689 1 68.1 ? C6 0NN 1501 B 1 HETATM 30 C C7 0NN . . . F 2 17.056 -41.464 42.268 1 66.64 ? C7 0NN 1501 B 1 HETATM 31 C C8 0NN . . . F 2 15.804 -41.837 40.36 1 60.62 ? C8 0NN 1501 B 1 HETATM 32 C C9 0NN . . . F 2 15.514 -40.416 39.861 1 54.52 ? C9 0NN 1501 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #