data_4EAI # _model_server_result.job_id ILw0Q336UkXPolm1pkUGYg _model_server_result.datetime_utc '2025-01-09 11:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 4EAI # _exptl.entry_id 4EAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EAI _cell.length_a 97.594 _cell.length_b 115.334 _cell.length_c 48.522 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4EAI _atom_sites.fract_transf_matrix[1][1] 0.010247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 AMP C 1 401 1327 AMP AMP . E 4 AMP C 1 402 1328 AMP AMP . F 4 AMP C 1 403 1329 AMP AMP . G 5 HOH A 1 501 11 HOH HOH . G 5 HOH A 2 502 12 HOH HOH . G 5 HOH A 3 503 13 HOH HOH . G 5 HOH A 4 504 15 HOH HOH . G 5 HOH A 5 505 17 HOH HOH . G 5 HOH A 6 506 22 HOH HOH . G 5 HOH A 7 507 23 HOH HOH . G 5 HOH A 8 508 25 HOH HOH . G 5 HOH A 9 509 28 HOH HOH . G 5 HOH A 10 510 33 HOH HOH . G 5 HOH A 11 511 35 HOH HOH . G 5 HOH A 12 512 42 HOH HOH . G 5 HOH A 13 513 47 HOH HOH . G 5 HOH A 14 514 59 HOH HOH . G 5 HOH A 15 515 67 HOH HOH . G 5 HOH A 16 516 71 HOH HOH . G 5 HOH A 17 517 87 HOH HOH . G 5 HOH A 18 518 100 HOH HOH . H 5 HOH B 1 301 1 HOH HOH . H 5 HOH B 2 302 2 HOH HOH . H 5 HOH B 3 303 7 HOH HOH . H 5 HOH B 4 304 24 HOH HOH . H 5 HOH B 5 305 27 HOH HOH . H 5 HOH B 6 306 40 HOH HOH . H 5 HOH B 7 307 51 HOH HOH . H 5 HOH B 8 308 61 HOH HOH . H 5 HOH B 9 309 66 HOH HOH . H 5 HOH B 10 310 80 HOH HOH . H 5 HOH B 11 311 91 HOH HOH . H 5 HOH B 12 312 103 HOH HOH . I 5 HOH C 1 501 3 HOH HOH . I 5 HOH C 2 502 4 HOH HOH . I 5 HOH C 3 503 5 HOH HOH . I 5 HOH C 4 504 6 HOH HOH . I 5 HOH C 5 505 8 HOH HOH . I 5 HOH C 6 506 9 HOH HOH . I 5 HOH C 7 507 10 HOH HOH . I 5 HOH C 8 508 14 HOH HOH . I 5 HOH C 9 509 16 HOH HOH . I 5 HOH C 10 510 18 HOH HOH . I 5 HOH C 11 511 19 HOH HOH . I 5 HOH C 12 512 20 HOH HOH . I 5 HOH C 13 513 26 HOH HOH . I 5 HOH C 14 514 29 HOH HOH . I 5 HOH C 15 515 30 HOH HOH . I 5 HOH C 16 516 31 HOH HOH . I 5 HOH C 17 517 32 HOH HOH . I 5 HOH C 18 518 34 HOH HOH . I 5 HOH C 19 519 36 HOH HOH . I 5 HOH C 20 520 37 HOH HOH . I 5 HOH C 21 521 38 HOH HOH . I 5 HOH C 22 522 39 HOH HOH . I 5 HOH C 23 523 41 HOH HOH . I 5 HOH C 24 524 43 HOH HOH . I 5 HOH C 25 525 44 HOH HOH . I 5 HOH C 26 526 45 HOH HOH . I 5 HOH C 27 527 46 HOH HOH . I 5 HOH C 28 528 48 HOH HOH . I 5 HOH C 29 529 49 HOH HOH . I 5 HOH C 30 530 50 HOH HOH . I 5 HOH C 31 531 52 HOH HOH . I 5 HOH C 32 532 53 HOH HOH . I 5 HOH C 33 533 54 HOH HOH . I 5 HOH C 34 534 55 HOH HOH . I 5 HOH C 35 535 56 HOH HOH . I 5 HOH C 36 536 57 HOH HOH . I 5 HOH C 37 537 58 HOH HOH . I 5 HOH C 38 538 60 HOH HOH . I 5 HOH C 39 539 62 HOH HOH . I 5 HOH C 40 540 63 HOH HOH . I 5 HOH C 41 541 64 HOH HOH . I 5 HOH C 42 542 65 HOH HOH . I 5 HOH C 43 543 68 HOH HOH . I 5 HOH C 44 544 69 HOH HOH . I 5 HOH C 45 545 70 HOH HOH . I 5 HOH C 46 546 72 HOH HOH . I 5 HOH C 47 547 73 HOH HOH . I 5 HOH C 48 548 74 HOH HOH . I 5 HOH C 49 549 75 HOH HOH . I 5 HOH C 50 550 76 HOH HOH . I 5 HOH C 51 551 77 HOH HOH . I 5 HOH C 52 552 78 HOH HOH . I 5 HOH C 53 553 79 HOH HOH . I 5 HOH C 54 554 81 HOH HOH . I 5 HOH C 55 555 82 HOH HOH . I 5 HOH C 56 556 83 HOH HOH . I 5 HOH C 57 557 84 HOH HOH . I 5 HOH C 58 558 85 HOH HOH . I 5 HOH C 59 559 86 HOH HOH . I 5 HOH C 60 560 88 HOH HOH . I 5 HOH C 61 561 89 HOH HOH . I 5 HOH C 62 562 90 HOH HOH . I 5 HOH C 63 563 92 HOH HOH . I 5 HOH C 64 564 93 HOH HOH . I 5 HOH C 65 565 94 HOH HOH . I 5 HOH C 66 566 95 HOH HOH . I 5 HOH C 67 567 96 HOH HOH . I 5 HOH C 68 568 97 HOH HOH . I 5 HOH C 69 569 98 HOH HOH . I 5 HOH C 70 570 99 HOH HOH . I 5 HOH C 71 571 101 HOH HOH . I 5 HOH C 72 572 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 4 -22.29 -2.475 -10.105 1 25.47 ? P AMP 403 C 1 HETATM 2 O O1P AMP . . . F 4 -21.07 -2.07 -10.897 1 28.26 ? O1P AMP 403 C 1 HETATM 3 O O2P AMP . . . F 4 -23.609 -2.105 -10.736 1 26.05 ? O2P AMP 403 C 1 HETATM 4 O O3P AMP . . . F 4 -22.221 -2.168 -8.628 1 33.64 ? O3P AMP 403 C 1 HETATM 5 O O5' AMP . . . F 4 -22.267 -4.085 -10.164 1 30.79 ? O5' AMP 403 C 1 HETATM 6 C C5' AMP . . . F 4 -21.155 -4.831 -9.659 1 19.37 ? C5' AMP 403 C 1 HETATM 7 C C4' AMP . . . F 4 -21.635 -6.239 -9.331 1 19.53 ? C4' AMP 403 C 1 HETATM 8 O O4' AMP . . . F 4 -22.53 -6.165 -8.222 1 27.99 ? O4' AMP 403 C 1 HETATM 9 C C3' AMP . . . F 4 -22.416 -6.83 -10.491 1 21.41 ? C3' AMP 403 C 1 HETATM 10 O O3' AMP . . . F 4 -22.087 -8.218 -10.596 1 24.58 ? O3' AMP 403 C 1 HETATM 11 C C2' AMP . . . F 4 -23.868 -6.675 -10.099 1 22.92 ? C2' AMP 403 C 1 HETATM 12 O O2' AMP . . . F 4 -24.664 -7.749 -10.597 1 26.94 ? O2' AMP 403 C 1 HETATM 13 C C1' AMP . . . F 4 -23.816 -6.672 -8.581 1 28.2 ? C1' AMP 403 C 1 HETATM 14 N N9 AMP . . . F 4 -24.869 -5.791 -8.033 1 23.38 ? N9 AMP 403 C 1 HETATM 15 C C8 AMP . . . F 4 -25.203 -4.575 -8.5 1 28.52 ? C8 AMP 403 C 1 HETATM 16 N N7 AMP . . . F 4 -26.215 -4.038 -7.774 1 21.75 ? N7 AMP 403 C 1 HETATM 17 C C5 AMP . . . F 4 -26.548 -4.93 -6.823 1 23.2 ? C5 AMP 403 C 1 HETATM 18 C C6 AMP . . . F 4 -27.526 -4.995 -5.711 1 24.97 ? C6 AMP 403 C 1 HETATM 19 N N6 AMP . . . F 4 -28.388 -3.975 -5.476 1 19.44 ? N6 AMP 403 C 1 HETATM 20 N N1 AMP . . . F 4 -27.536 -6.112 -4.95 1 28.78 ? N1 AMP 403 C 1 HETATM 21 C C2 AMP . . . F 4 -26.687 -7.133 -5.176 1 31.12 ? C2 AMP 403 C 1 HETATM 22 N N3 AMP . . . F 4 -25.772 -7.138 -6.161 1 24.41 ? N3 AMP 403 C 1 HETATM 23 C C4 AMP . . . F 4 -25.657 -6.086 -7.002 1 26.52 ? C4 AMP 403 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #