data_4EAJ # _model_server_result.job_id 0QktrCMpKUr0SzyfX-PmZA _model_server_result.datetime_utc '2025-01-09 21:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eaj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4EAJ # _exptl.entry_id 4EAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EAJ _cell.length_a 97.104 _cell.length_b 116.006 _cell.length_c 48.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 4EAJ _atom_sites.fract_transf_matrix[1][1] 0.010298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP C 1 401 1327 ATP ATP . E 4 ATP C 1 402 1328 ATP ATP . F 5 AMP C 1 403 1329 AMP AMP . G 6 HOH A 1 501 3 HOH HOH . G 6 HOH A 2 502 4 HOH HOH . G 6 HOH A 3 503 7 HOH HOH . G 6 HOH A 4 504 8 HOH HOH . G 6 HOH A 5 505 9 HOH HOH . G 6 HOH A 6 506 12 HOH HOH . G 6 HOH A 7 507 13 HOH HOH . G 6 HOH A 8 508 14 HOH HOH . G 6 HOH A 9 509 17 HOH HOH . G 6 HOH A 10 510 18 HOH HOH . G 6 HOH A 11 511 26 HOH HOH . G 6 HOH A 12 512 37 HOH HOH . G 6 HOH A 13 513 42 HOH HOH . G 6 HOH A 14 514 49 HOH HOH . G 6 HOH A 15 515 51 HOH HOH . G 6 HOH A 16 516 52 HOH HOH . G 6 HOH A 17 517 54 HOH HOH . H 6 HOH B 1 301 1 HOH HOH . H 6 HOH B 2 302 5 HOH HOH . H 6 HOH B 3 303 11 HOH HOH . H 6 HOH B 4 304 15 HOH HOH . H 6 HOH B 5 305 23 HOH HOH . H 6 HOH B 6 306 28 HOH HOH . H 6 HOH B 7 307 32 HOH HOH . H 6 HOH B 8 308 33 HOH HOH . H 6 HOH B 9 309 46 HOH HOH . I 6 HOH C 1 501 2 HOH HOH . I 6 HOH C 2 502 6 HOH HOH . I 6 HOH C 3 503 10 HOH HOH . I 6 HOH C 4 504 16 HOH HOH . I 6 HOH C 5 505 19 HOH HOH . I 6 HOH C 6 506 20 HOH HOH . I 6 HOH C 7 507 21 HOH HOH . I 6 HOH C 8 508 22 HOH HOH . I 6 HOH C 9 509 24 HOH HOH . I 6 HOH C 10 510 25 HOH HOH . I 6 HOH C 11 511 27 HOH HOH . I 6 HOH C 12 512 29 HOH HOH . I 6 HOH C 13 513 30 HOH HOH . I 6 HOH C 14 514 31 HOH HOH . I 6 HOH C 15 515 34 HOH HOH . I 6 HOH C 16 516 35 HOH HOH . I 6 HOH C 17 517 36 HOH HOH . I 6 HOH C 18 518 38 HOH HOH . I 6 HOH C 19 519 39 HOH HOH . I 6 HOH C 20 520 40 HOH HOH . I 6 HOH C 21 521 41 HOH HOH . I 6 HOH C 22 522 43 HOH HOH . I 6 HOH C 23 523 44 HOH HOH . I 6 HOH C 24 524 45 HOH HOH . I 6 HOH C 25 525 47 HOH HOH . I 6 HOH C 26 526 48 HOH HOH . I 6 HOH C 27 527 50 HOH HOH . I 6 HOH C 28 528 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 -21.841 5.731 -14.852 1 68.99 ? PG ATP 401 C 1 HETATM 2 O O1G ATP . . . D 4 -20.571 6.105 -15.567 1 76.15 ? O1G ATP 401 C 1 HETATM 3 O O2G ATP . . . D 4 -21.696 5.55 -13.366 1 73.21 ? O2G ATP 401 C 1 HETATM 4 O O3G ATP . . . D 4 -22.589 4.607 -15.509 1 63.57 ? O3G ATP 401 C 1 HETATM 5 P PB ATP . . . D 4 -23.894 7.45 -13.894 1 62.56 ? PB ATP 401 C 1 HETATM 6 O O1B ATP . . . D 4 -24.046 8.934 -14.032 1 66.46 ? O1B ATP 401 C 1 HETATM 7 O O2B ATP . . . D 4 -23.477 6.912 -12.573 1 71.04 ? O2B ATP 401 C 1 HETATM 8 O O3B ATP . . . D 4 -22.832 6.995 -15.014 1 115.3 ? O3B ATP 401 C 1 HETATM 9 P PA ATP . . . D 4 -26.108 5.815 -13.287 1 59.59 ? PA ATP 401 C 1 HETATM 10 O O1A ATP . . . D 4 -26.645 4.646 -14.065 1 61.06 ? O1A ATP 401 C 1 HETATM 11 O O2A ATP . . . D 4 -25.28 5.555 -12.066 1 59.69 ? O2A ATP 401 C 1 HETATM 12 O O3A ATP . . . D 4 -25.292 6.771 -14.297 1 49.01 ? O3A ATP 401 C 1 HETATM 13 O O5' ATP . . . D 4 -27.346 6.718 -12.805 1 47.93 ? O5' ATP 401 C 1 HETATM 14 C C5' ATP . . . D 4 -27.927 7.688 -13.679 1 49.17 ? C5' ATP 401 C 1 HETATM 15 C C4' ATP . . . D 4 -29.318 8.047 -13.171 1 52.66 ? C4' ATP 401 C 1 HETATM 16 O O4' ATP . . . D 4 -30.271 7.181 -13.784 1 59.04 ? O4' ATP 401 C 1 HETATM 17 C C3' ATP . . . D 4 -29.41 7.864 -11.667 1 56.54 ? C3' ATP 401 C 1 HETATM 18 O O3' ATP . . . D 4 -29.905 9.057 -11.056 1 66.18 ? O3' ATP 401 C 1 HETATM 19 C C2' ATP . . . D 4 -30.379 6.72 -11.466 1 52.97 ? C2' ATP 401 C 1 HETATM 20 O O2' ATP . . . D 4 -31.335 7.01 -10.446 1 58.03 ? O2' ATP 401 C 1 HETATM 21 C C1' ATP . . . D 4 -31.056 6.505 -12.808 1 51.76 ? C1' ATP 401 C 1 HETATM 22 N N9 ATP . . . D 4 -31.063 5.049 -13.082 1 50.67 ? N9 ATP 401 C 1 HETATM 23 C C8 ATP . . . D 4 -29.976 4.261 -13.062 1 42.81 ? C8 ATP 401 C 1 HETATM 24 N N7 ATP . . . D 4 -30.312 2.984 -13.338 1 49.95 ? N7 ATP 401 C 1 HETATM 25 C C5 ATP . . . D 4 -31.64 2.929 -13.535 1 43.52 ? C5 ATP 401 C 1 HETATM 26 C C6 ATP . . . D 4 -32.636 1.882 -13.859 1 37.96 ? C6 ATP 401 C 1 HETATM 27 N N6 ATP . . . D 4 -32.267 0.588 -14.038 1 34.25 ? N6 ATP 401 C 1 HETATM 28 N N1 ATP . . . D 4 -33.928 2.264 -13.972 1 43.6 ? N1 ATP 401 C 1 HETATM 29 C C2 ATP . . . D 4 -34.318 3.536 -13.806 1 46.11 ? C2 ATP 401 C 1 HETATM 30 N N3 ATP . . . D 4 -33.465 4.529 -13.51 1 55.95 ? N3 ATP 401 C 1 HETATM 31 C C4 ATP . . . D 4 -32.136 4.297 -13.359 1 51.34 ? C4 ATP 401 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #