data_4EAJ # _model_server_result.job_id fG4SnV5ZrmKaArDCbSbFDg _model_server_result.datetime_utc '2025-01-09 21:16:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eaj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 4EAJ # _exptl.entry_id 4EAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EAJ _cell.length_a 97.104 _cell.length_b 116.006 _cell.length_c 48.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 4EAJ _atom_sites.fract_transf_matrix[1][1] 0.010298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP C 1 401 1327 ATP ATP . E 4 ATP C 1 402 1328 ATP ATP . F 5 AMP C 1 403 1329 AMP AMP . G 6 HOH A 1 501 3 HOH HOH . G 6 HOH A 2 502 4 HOH HOH . G 6 HOH A 3 503 7 HOH HOH . G 6 HOH A 4 504 8 HOH HOH . G 6 HOH A 5 505 9 HOH HOH . G 6 HOH A 6 506 12 HOH HOH . G 6 HOH A 7 507 13 HOH HOH . G 6 HOH A 8 508 14 HOH HOH . G 6 HOH A 9 509 17 HOH HOH . G 6 HOH A 10 510 18 HOH HOH . G 6 HOH A 11 511 26 HOH HOH . G 6 HOH A 12 512 37 HOH HOH . G 6 HOH A 13 513 42 HOH HOH . G 6 HOH A 14 514 49 HOH HOH . G 6 HOH A 15 515 51 HOH HOH . G 6 HOH A 16 516 52 HOH HOH . G 6 HOH A 17 517 54 HOH HOH . H 6 HOH B 1 301 1 HOH HOH . H 6 HOH B 2 302 5 HOH HOH . H 6 HOH B 3 303 11 HOH HOH . H 6 HOH B 4 304 15 HOH HOH . H 6 HOH B 5 305 23 HOH HOH . H 6 HOH B 6 306 28 HOH HOH . H 6 HOH B 7 307 32 HOH HOH . H 6 HOH B 8 308 33 HOH HOH . H 6 HOH B 9 309 46 HOH HOH . I 6 HOH C 1 501 2 HOH HOH . I 6 HOH C 2 502 6 HOH HOH . I 6 HOH C 3 503 10 HOH HOH . I 6 HOH C 4 504 16 HOH HOH . I 6 HOH C 5 505 19 HOH HOH . I 6 HOH C 6 506 20 HOH HOH . I 6 HOH C 7 507 21 HOH HOH . I 6 HOH C 8 508 22 HOH HOH . I 6 HOH C 9 509 24 HOH HOH . I 6 HOH C 10 510 25 HOH HOH . I 6 HOH C 11 511 27 HOH HOH . I 6 HOH C 12 512 29 HOH HOH . I 6 HOH C 13 513 30 HOH HOH . I 6 HOH C 14 514 31 HOH HOH . I 6 HOH C 15 515 34 HOH HOH . I 6 HOH C 16 516 35 HOH HOH . I 6 HOH C 17 517 36 HOH HOH . I 6 HOH C 18 518 38 HOH HOH . I 6 HOH C 19 519 39 HOH HOH . I 6 HOH C 20 520 40 HOH HOH . I 6 HOH C 21 521 41 HOH HOH . I 6 HOH C 22 522 43 HOH HOH . I 6 HOH C 23 523 44 HOH HOH . I 6 HOH C 24 524 45 HOH HOH . I 6 HOH C 25 525 47 HOH HOH . I 6 HOH C 26 526 48 HOH HOH . I 6 HOH C 27 527 50 HOH HOH . I 6 HOH C 28 528 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 -19.954 3.707 -8.948 1 58.63 ? PG ATP 402 C 1 HETATM 2 O O1G ATP . . . E 4 -19.38 3.69 -10.337 1 62.44 ? O1G ATP 402 C 1 HETATM 3 O O2G ATP . . . E 4 -21.125 4.633 -8.777 1 59.34 ? O2G ATP 402 C 1 HETATM 4 O O3G ATP . . . E 4 -20.187 2.325 -8.395 1 63.64 ? O3G ATP 402 C 1 HETATM 5 P PB ATP . . . E 4 -17.537 5.147 -8.541 1 47 ? PB ATP 402 C 1 HETATM 6 O O1B ATP . . . E 4 -17.287 4.876 -9.978 1 74.72 ? O1B ATP 402 C 1 HETATM 7 O O2B ATP . . . E 4 -17.735 6.573 -8.137 1 62.95 ? O2B ATP 402 C 1 HETATM 8 O O3B ATP . . . E 4 -18.778 4.282 -8.009 1 57.88 ? O3B ATP 402 C 1 HETATM 9 P PA ATP . . . E 4 -15.372 3.339 -8.151 1 39.05 ? PA ATP 402 C 1 HETATM 10 O O1A ATP . . . E 4 -14.672 3.655 -9.437 1 35.68 ? O1A ATP 402 C 1 HETATM 11 O O2A ATP . . . E 4 -16.163 2.075 -8.011 1 41.94 ? O2A ATP 402 C 1 HETATM 12 O O3A ATP . . . E 4 -16.312 4.563 -7.693 1 53.47 ? O3A ATP 402 C 1 HETATM 13 O O5' ATP . . . E 4 -14.264 3.425 -6.998 1 51.96 ? O5' ATP 402 C 1 HETATM 14 C C5' ATP . . . E 4 -14.177 2.517 -5.908 1 47.52 ? C5' ATP 402 C 1 HETATM 15 C C4' ATP . . . E 4 -12.931 2.935 -5.145 1 42.62 ? C4' ATP 402 C 1 HETATM 16 O O4' ATP . . . E 4 -11.811 2.777 -6.017 1 42.31 ? O4' ATP 402 C 1 HETATM 17 C C3' ATP . . . E 4 -13.002 4.401 -4.761 1 36.32 ? C3' ATP 402 C 1 HETATM 18 O O3' ATP . . . E 4 -12.592 4.539 -3.401 1 36.39 ? O3' ATP 402 C 1 HETATM 19 C C2' ATP . . . E 4 -12.014 5.099 -5.669 1 31.29 ? C2' ATP 402 C 1 HETATM 20 O O2' ATP . . . E 4 -11.257 6.081 -4.964 1 35.22 ? O2' ATP 402 C 1 HETATM 21 C C1' ATP . . . E 4 -11.1 4.003 -6.182 1 32.46 ? C1' ATP 402 C 1 HETATM 22 N N9 ATP . . . E 4 -10.76 4.234 -7.612 1 37.97 ? N9 ATP 402 C 1 HETATM 23 C C8 ATP . . . E 4 -11.631 4.523 -8.592 1 30.18 ? C8 ATP 402 C 1 HETATM 24 N N7 ATP . . . E 4 -10.992 4.677 -9.77 1 33.1 ? N7 ATP 402 C 1 HETATM 25 C C5 ATP . . . E 4 -9.678 4.49 -9.566 1 34.85 ? C5 ATP 402 C 1 HETATM 26 C C6 ATP . . . E 4 -8.445 4.507 -10.387 1 28.33 ? C6 ATP 402 C 1 HETATM 27 N N6 ATP . . . E 4 -8.486 4.768 -11.717 1 25.4 ? N6 ATP 402 C 1 HETATM 28 N N1 ATP . . . E 4 -7.277 4.257 -9.753 1 38.58 ? N1 ATP 402 C 1 HETATM 29 C C2 ATP . . . E 4 -7.213 3.998 -8.439 1 26.49 ? C2 ATP 402 C 1 HETATM 30 N N3 ATP . . . E 4 -8.289 3.966 -7.642 1 22.6 ? N3 ATP 402 C 1 HETATM 31 C C4 ATP . . . E 4 -9.529 4.202 -8.134 1 36.2 ? C4 ATP 402 C 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #