data_4EAK # _model_server_result.job_id VIVaTfzTEIhGz5rtS3RJ_A _model_server_result.datetime_utc '2025-01-09 21:07:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 4EAK # _exptl.entry_id 4EAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.11 _cell.angle_gamma 90 _cell.entry_id 4EAK _cell.length_a 176.558 _cell.length_b 40.508 _cell.length_c 77.598 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4EAK _atom_sites.fract_transf_matrix[1][1] 0.005664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00153 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP C 1 401 1 ATP ATP . E 4 ATP C 1 402 2 ATP ATP . F 5 TAM C 1 403 3 TAM TAM . G 6 HOH A 1 601 1 HOH HOH . G 6 HOH A 2 602 21 HOH HOH . G 6 HOH A 3 603 24 HOH HOH . G 6 HOH A 4 604 39 HOH HOH . G 6 HOH A 5 605 40 HOH HOH . G 6 HOH A 6 606 56 HOH HOH . G 6 HOH A 7 607 72 HOH HOH . G 6 HOH A 8 608 73 HOH HOH . G 6 HOH A 9 609 75 HOH HOH . G 6 HOH A 10 610 76 HOH HOH . H 6 HOH B 1 301 3 HOH HOH . H 6 HOH B 2 302 10 HOH HOH . H 6 HOH B 3 303 14 HOH HOH . H 6 HOH B 4 304 17 HOH HOH . H 6 HOH B 5 305 18 HOH HOH . H 6 HOH B 6 306 27 HOH HOH . H 6 HOH B 7 307 36 HOH HOH . H 6 HOH B 8 308 41 HOH HOH . H 6 HOH B 9 309 64 HOH HOH . H 6 HOH B 10 310 65 HOH HOH . H 6 HOH B 11 311 71 HOH HOH . I 6 HOH C 1 501 2 HOH HOH . I 6 HOH C 2 502 4 HOH HOH . I 6 HOH C 3 503 5 HOH HOH . I 6 HOH C 4 504 6 HOH HOH . I 6 HOH C 5 505 7 HOH HOH . I 6 HOH C 6 506 8 HOH HOH . I 6 HOH C 7 507 9 HOH HOH . I 6 HOH C 8 508 11 HOH HOH . I 6 HOH C 9 509 12 HOH HOH . I 6 HOH C 10 510 13 HOH HOH . I 6 HOH C 11 511 15 HOH HOH . I 6 HOH C 12 512 16 HOH HOH . I 6 HOH C 13 513 19 HOH HOH . I 6 HOH C 14 514 20 HOH HOH . I 6 HOH C 15 515 22 HOH HOH . I 6 HOH C 16 516 23 HOH HOH . I 6 HOH C 17 517 25 HOH HOH . I 6 HOH C 18 518 26 HOH HOH . I 6 HOH C 19 519 28 HOH HOH . I 6 HOH C 20 520 29 HOH HOH . I 6 HOH C 21 521 30 HOH HOH . I 6 HOH C 22 522 31 HOH HOH . I 6 HOH C 23 523 32 HOH HOH . I 6 HOH C 24 524 33 HOH HOH . I 6 HOH C 25 525 34 HOH HOH . I 6 HOH C 26 526 35 HOH HOH . I 6 HOH C 27 527 37 HOH HOH . I 6 HOH C 28 528 38 HOH HOH . I 6 HOH C 29 529 42 HOH HOH . I 6 HOH C 30 530 43 HOH HOH . I 6 HOH C 31 531 44 HOH HOH . I 6 HOH C 32 532 45 HOH HOH . I 6 HOH C 33 533 46 HOH HOH . I 6 HOH C 34 534 47 HOH HOH . I 6 HOH C 35 535 48 HOH HOH . I 6 HOH C 36 536 49 HOH HOH . I 6 HOH C 37 537 50 HOH HOH . I 6 HOH C 38 538 51 HOH HOH . I 6 HOH C 39 539 52 HOH HOH . I 6 HOH C 40 540 53 HOH HOH . I 6 HOH C 41 541 54 HOH HOH . I 6 HOH C 42 542 55 HOH HOH . I 6 HOH C 43 543 57 HOH HOH . I 6 HOH C 44 544 58 HOH HOH . I 6 HOH C 45 545 59 HOH HOH . I 6 HOH C 46 546 60 HOH HOH . I 6 HOH C 47 547 61 HOH HOH . I 6 HOH C 48 548 62 HOH HOH . I 6 HOH C 49 549 66 HOH HOH . I 6 HOH C 50 550 67 HOH HOH . I 6 HOH C 51 551 68 HOH HOH . I 6 HOH C 52 552 69 HOH HOH . I 6 HOH C 53 553 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 -15.229 395.649 -24.885 0.3 80.09 ? PG ATP 402 C 1 HETATM 2 O O1G ATP . . . E 4 -14.885 396.276 -26.204 1 79.46 ? O1G ATP 402 C 1 HETATM 3 O O2G ATP . . . E 4 -16.363 394.711 -24.843 0.59 81.39 ? O2G ATP 402 C 1 HETATM 4 O O3G ATP . . . E 4 -14.046 395.288 -24.053 0.93 78.3 ? O3G ATP 402 C 1 HETATM 5 P PB ATP . . . E 4 -17.433 396.741 -24.708 1 72.4 ? PB ATP 402 C 1 HETATM 6 O O1B ATP . . . E 4 -18.325 395.964 -23.844 1 72.94 ? O1B ATP 402 C 1 HETATM 7 O O2B ATP . . . E 4 -17.174 396.442 -26.111 1 77.36 ? O2B ATP 402 C 1 HETATM 8 O O3B ATP . . . E 4 -16.044 396.704 -24.067 1 96.46 ? O3B ATP 402 C 1 HETATM 9 P PA ATP . . . E 4 -18.16 399.009 -25.926 1 68.77 ? PA ATP 402 C 1 HETATM 10 O O1A ATP . . . E 4 -18.32 398.161 -27.101 1 58.55 ? O1A ATP 402 C 1 HETATM 11 O O2A ATP . . . E 4 -17.309 400.215 -25.97 1 69.7 ? O2A ATP 402 C 1 HETATM 12 O O3A ATP . . . E 4 -17.812 398.232 -24.635 1 87.64 ? O3A ATP 402 C 1 HETATM 13 O O5' ATP . . . E 4 -19.58 399.441 -25.443 1 69.45 ? O5' ATP 402 C 1 HETATM 14 C C5' ATP . . . E 4 -19.878 399.568 -24.076 1 63.32 ? C5' ATP 402 C 1 HETATM 15 C C4' ATP . . . E 4 -21.369 399.786 -23.942 1 57.26 ? C4' ATP 402 C 1 HETATM 16 O O4' ATP . . . E 4 -21.809 400.482 -25.073 1 58.11 ? O4' ATP 402 C 1 HETATM 17 C C3' ATP . . . E 4 -22.051 398.461 -23.968 1 53.54 ? C3' ATP 402 C 1 HETATM 18 O O3' ATP . . . E 4 -23.208 398.457 -23.171 1 44.23 ? O3' ATP 402 C 1 HETATM 19 C C2' ATP . . . E 4 -22.511 398.319 -25.366 1 58.01 ? C2' ATP 402 C 1 HETATM 20 O O2' ATP . . . E 4 -23.715 397.609 -25.247 1 62.59 ? O2' ATP 402 C 1 HETATM 21 C C1' ATP . . . E 4 -22.711 399.723 -25.831 1 56.87 ? C1' ATP 402 C 1 HETATM 22 N N9 ATP . . . E 4 -22.346 399.918 -27.239 1 57.46 ? N9 ATP 402 C 1 HETATM 23 C C8 ATP . . . E 4 -21.401 399.296 -27.918 1 55.89 ? C8 ATP 402 C 1 HETATM 24 N N7 ATP . . . E 4 -21.334 399.725 -29.177 1 56.46 ? N7 ATP 402 C 1 HETATM 25 C C5 ATP . . . E 4 -22.258 400.649 -29.331 1 57.55 ? C5 ATP 402 C 1 HETATM 26 C C6 ATP . . . E 4 -22.738 401.514 -30.409 1 61.5 ? C6 ATP 402 C 1 HETATM 27 N N6 ATP . . . E 4 -22.21 401.491 -31.629 1 62.26 ? N6 ATP 402 C 1 HETATM 28 N N1 ATP . . . E 4 -23.737 402.342 -30.151 1 64.17 ? N1 ATP 402 C 1 HETATM 29 C C2 ATP . . . E 4 -24.292 402.397 -28.957 1 60.43 ? C2 ATP 402 C 1 HETATM 30 N N3 ATP . . . E 4 -23.91 401.644 -27.944 1 57.41 ? N3 ATP 402 C 1 HETATM 31 C C4 ATP . . . E 4 -22.918 400.765 -28.056 1 57.42 ? C4 ATP 402 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #