data_4EAL # _model_server_result.job_id tPN876-1GVCxAlnrg51BhQ _model_server_result.datetime_utc '2024-12-23 12:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 4EAL # _exptl.entry_id 4EAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.53 _cell.angle_gamma 90 _cell.entry_id 4EAL _cell.length_a 175.85 _cell.length_b 40.503 _cell.length_c 77.738 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4EAL _atom_sites.fract_transf_matrix[1][1] 0.005687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 AMP C 1 401 1328 AMP AMP . E 4 AMP C 1 402 1329 AMP AMP . F 5 HOH A 1 601 2 HOH HOH . F 5 HOH A 2 602 6 HOH HOH . F 5 HOH A 3 603 7 HOH HOH . F 5 HOH A 4 604 24 HOH HOH . F 5 HOH A 5 605 47 HOH HOH . F 5 HOH A 6 606 56 HOH HOH . F 5 HOH A 7 607 54 HOH HOH . G 5 HOH B 1 301 5 HOH HOH . G 5 HOH B 2 302 10 HOH HOH . G 5 HOH B 3 303 11 HOH HOH . G 5 HOH B 4 304 18 HOH HOH . G 5 HOH B 5 305 50 HOH HOH . G 5 HOH B 6 306 53 HOH HOH . G 5 HOH B 7 307 55 HOH HOH . H 5 HOH C 1 501 1 HOH HOH . H 5 HOH C 2 502 3 HOH HOH . H 5 HOH C 3 503 4 HOH HOH . H 5 HOH C 4 504 8 HOH HOH . H 5 HOH C 5 505 9 HOH HOH . H 5 HOH C 6 506 12 HOH HOH . H 5 HOH C 7 507 13 HOH HOH . H 5 HOH C 8 508 14 HOH HOH . H 5 HOH C 9 509 15 HOH HOH . H 5 HOH C 10 510 16 HOH HOH . H 5 HOH C 11 511 17 HOH HOH . H 5 HOH C 12 512 19 HOH HOH . H 5 HOH C 13 513 20 HOH HOH . H 5 HOH C 14 514 21 HOH HOH . H 5 HOH C 15 515 22 HOH HOH . H 5 HOH C 16 516 23 HOH HOH . H 5 HOH C 17 517 25 HOH HOH . H 5 HOH C 18 518 26 HOH HOH . H 5 HOH C 19 519 27 HOH HOH . H 5 HOH C 20 520 28 HOH HOH . H 5 HOH C 21 521 29 HOH HOH . H 5 HOH C 22 522 30 HOH HOH . H 5 HOH C 23 523 31 HOH HOH . H 5 HOH C 24 524 32 HOH HOH . H 5 HOH C 25 525 33 HOH HOH . H 5 HOH C 26 526 34 HOH HOH . H 5 HOH C 27 527 35 HOH HOH . H 5 HOH C 28 528 36 HOH HOH . H 5 HOH C 29 529 37 HOH HOH . H 5 HOH C 30 530 38 HOH HOH . H 5 HOH C 31 531 39 HOH HOH . H 5 HOH C 32 532 40 HOH HOH . H 5 HOH C 33 533 41 HOH HOH . H 5 HOH C 34 534 42 HOH HOH . H 5 HOH C 35 535 43 HOH HOH . H 5 HOH C 36 536 44 HOH HOH . H 5 HOH C 37 537 45 HOH HOH . H 5 HOH C 38 538 46 HOH HOH . H 5 HOH C 39 539 48 HOH HOH . H 5 HOH C 40 540 49 HOH HOH . H 5 HOH C 41 541 51 HOH HOH . H 5 HOH C 42 542 52 HOH HOH . H 5 HOH C 43 543 57 HOH HOH . H 5 HOH C 44 544 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 4 -17.851 398.996 -25.304 1 73.62 ? P AMP 402 C 1 HETATM 2 O O1P AMP . . . E 4 -18.076 398.112 -26.506 1 76.65 ? O1P AMP 402 C 1 HETATM 3 O O2P AMP . . . E 4 -17.139 398.309 -24.163 1 73.8 ? O2P AMP 402 C 1 HETATM 4 O O3P AMP . . . E 4 -17.355 400.383 -25.641 1 66.66 ? O3P AMP 402 C 1 HETATM 5 O O5' AMP . . . E 4 -19.342 399.241 -24.755 1 64.93 ? O5' AMP 402 C 1 HETATM 6 C C5' AMP . . . E 4 -19.646 400.201 -23.745 1 60.49 ? C5' AMP 402 C 1 HETATM 7 C C4' AMP . . . E 4 -21.156 400.401 -23.752 1 58.98 ? C4' AMP 402 C 1 HETATM 8 O O4' AMP . . . E 4 -21.521 401.174 -24.899 1 61.26 ? O4' AMP 402 C 1 HETATM 9 C C3' AMP . . . E 4 -21.862 399.059 -23.856 1 56.71 ? C3' AMP 402 C 1 HETATM 10 O O3' AMP . . . E 4 -22.908 398.986 -22.883 1 55.16 ? O3' AMP 402 C 1 HETATM 11 C C2' AMP . . . E 4 -22.449 399.023 -25.252 1 58.99 ? C2' AMP 402 C 1 HETATM 12 O O2' AMP . . . E 4 -23.761 398.458 -25.225 1 65.07 ? O2' AMP 402 C 1 HETATM 13 C C1' AMP . . . E 4 -22.478 400.477 -25.7 1 61.66 ? C1' AMP 402 C 1 HETATM 14 N N9 AMP . . . E 4 -22.143 400.605 -27.144 1 66.43 ? N9 AMP 402 C 1 HETATM 15 C C8 AMP . . . E 4 -21.183 399.931 -27.807 1 66.12 ? C8 AMP 402 C 1 HETATM 16 N N7 AMP . . . E 4 -21.149 400.284 -29.117 1 69.48 ? N7 AMP 402 C 1 HETATM 17 C C5 AMP . . . E 4 -22.111 401.205 -29.314 1 71.98 ? C5 AMP 402 C 1 HETATM 18 C C6 AMP . . . E 4 -22.618 401.999 -30.46 1 72.33 ? C6 AMP 402 C 1 HETATM 19 N N6 AMP . . . E 4 -22.077 401.877 -31.697 1 70.11 ? N6 AMP 402 C 1 HETATM 20 N N1 AMP . . . E 4 -23.641 402.852 -30.229 1 74.65 ? N1 AMP 402 C 1 HETATM 21 C C2 AMP . . . E 4 -24.189 402.987 -29.007 1 72.85 ? C2 AMP 402 C 1 HETATM 22 N N3 AMP . . . E 4 -23.779 402.301 -27.926 1 70.65 ? N3 AMP 402 C 1 HETATM 23 C C4 AMP . . . E 4 -22.764 401.409 -28.011 1 70.53 ? C4 AMP 402 C 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #