data_4EAQ
#
_model_server_result.job_id            ndSOhNyM8R7icpF_ao-TfQ 
_model_server_result.datetime_utc      '2024-11-27 19:14:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4eaq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4EAQ 
#
_exptl.entry_id    4EAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.84 
_cell.angle_gamma         90 
_cell.entry_id            4EAQ 
_cell.length_a            48.207 
_cell.length_b            62.704 
_cell.length_c            73.806 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EAQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                ATM 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P OP1 ATM doub 70 n n 
P OP2 ATM sing 71 n n 
P OP3 ATM sing 72 n n 
P O5' ATM sing 73 n n 
OP2 HOP2 ATM sing 74 n n 
OP3 HOP3 ATM sing 75 n n 
O5' C5' ATM sing 76 n n 
C5' C4' ATM sing 77 n n 
C5' H5' ATM sing 78 n n 
C5' "H5''" ATM sing 79 n n 
C4' O4' ATM sing 80 n n 
C4' C3' ATM sing 81 n n 
C4' H4' ATM sing 82 n n 
O4' C1' ATM sing 83 n n 
C3' N3' ATM sing 84 n n 
C3' C2' ATM sing 85 n n 
C3' H3' ATM sing 86 n n 
N3' N4' ATM doub 87 n n 
N4' N5' ATM doub 88 n n 
C2' C1' ATM sing 89 n n 
C2' H2' ATM sing 90 n n 
C2' "H2''" ATM sing 91 n n 
C1' N1 ATM sing 92 n n 
C1' H1' ATM sing 93 n n 
N1 C2 ATM sing 94 n n 
N1 C6 ATM sing 95 n n 
C2 O2 ATM doub 96 n n 
C2 N3 ATM sing 97 n n 
N3 C4 ATM sing 98 n n 
N3 HN3 ATM sing 99 n n 
C4 O4 ATM doub 100 n n 
C4 C5 ATM sing 101 n n 
C5 C5A ATM sing 102 n n 
C5 C6 ATM doub 103 n n 
C5A H51 ATM sing 104 n n 
C5A H52 ATM sing 105 n n 
C5A H53 ATM sing 106 n n 
C6 H6 ATM sing 107 n n 
#
_atom_sites.entry_id                     4EAQ 
_atom_sites.fract_transf_matrix[1][1]    0.020744 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002855 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015948 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATM A 1 301 209 ATM ATM . 
D 2 ATM B 1 301 309 ATM ATM . 
E 3 HOH A 1 401 1 HOH HOH . 
E 3 HOH A 2 402 4 HOH HOH . 
E 3 HOH A 3 403 5 HOH HOH . 
E 3 HOH A 4 404 6 HOH HOH . 
E 3 HOH A 5 405 7 HOH HOH . 
E 3 HOH A 6 406 12 HOH HOH . 
E 3 HOH A 7 407 14 HOH HOH . 
E 3 HOH A 8 408 15 HOH HOH . 
E 3 HOH A 9 409 16 HOH HOH . 
E 3 HOH A 10 410 18 HOH HOH . 
E 3 HOH A 11 411 19 HOH HOH . 
E 3 HOH A 12 412 20 HOH HOH . 
E 3 HOH A 13 413 24 HOH HOH . 
E 3 HOH A 14 414 25 HOH HOH . 
E 3 HOH A 15 415 26 HOH HOH . 
E 3 HOH A 16 416 27 HOH HOH . 
E 3 HOH A 17 417 28 HOH HOH . 
E 3 HOH A 18 418 29 HOH HOH . 
E 3 HOH A 19 419 30 HOH HOH . 
E 3 HOH A 20 420 31 HOH HOH . 
E 3 HOH A 21 421 32 HOH HOH . 
E 3 HOH A 22 422 34 HOH HOH . 
E 3 HOH A 23 423 35 HOH HOH . 
E 3 HOH A 24 424 36 HOH HOH . 
E 3 HOH A 25 425 37 HOH HOH . 
E 3 HOH A 26 426 38 HOH HOH . 
E 3 HOH A 27 427 40 HOH HOH . 
E 3 HOH A 28 428 41 HOH HOH . 
E 3 HOH A 29 429 42 HOH HOH . 
E 3 HOH A 30 430 43 HOH HOH . 
E 3 HOH A 31 431 45 HOH HOH . 
E 3 HOH A 32 432 48 HOH HOH . 
E 3 HOH A 33 433 51 HOH HOH . 
E 3 HOH A 34 434 52 HOH HOH . 
E 3 HOH A 35 435 53 HOH HOH . 
E 3 HOH A 36 436 54 HOH HOH . 
E 3 HOH A 37 437 55 HOH HOH . 
E 3 HOH A 38 438 56 HOH HOH . 
E 3 HOH A 39 439 57 HOH HOH . 
E 3 HOH A 40 440 58 HOH HOH . 
E 3 HOH A 41 441 59 HOH HOH . 
E 3 HOH A 42 442 62 HOH HOH . 
E 3 HOH A 43 443 63 HOH HOH . 
E 3 HOH A 44 444 64 HOH HOH . 
E 3 HOH A 45 445 66 HOH HOH . 
E 3 HOH A 46 446 67 HOH HOH . 
E 3 HOH A 47 447 68 HOH HOH . 
E 3 HOH A 48 448 69 HOH HOH . 
E 3 HOH A 49 449 71 HOH HOH . 
E 3 HOH A 50 450 73 HOH HOH . 
E 3 HOH A 51 451 74 HOH HOH . 
E 3 HOH A 52 452 75 HOH HOH . 
E 3 HOH A 53 453 76 HOH HOH . 
E 3 HOH A 54 454 77 HOH HOH . 
E 3 HOH A 55 455 78 HOH HOH . 
E 3 HOH A 56 456 79 HOH HOH . 
E 3 HOH A 57 457 80 HOH HOH . 
E 3 HOH A 58 458 81 HOH HOH . 
E 3 HOH A 59 459 82 HOH HOH . 
E 3 HOH A 60 460 83 HOH HOH . 
E 3 HOH A 61 461 85 HOH HOH . 
E 3 HOH A 62 462 86 HOH HOH . 
E 3 HOH A 63 463 87 HOH HOH . 
E 3 HOH A 64 464 88 HOH HOH . 
E 3 HOH A 65 465 89 HOH HOH . 
E 3 HOH A 66 466 90 HOH HOH . 
E 3 HOH A 67 467 91 HOH HOH . 
E 3 HOH A 68 468 93 HOH HOH . 
E 3 HOH A 69 469 94 HOH HOH . 
E 3 HOH A 70 470 95 HOH HOH . 
E 3 HOH A 71 471 96 HOH HOH . 
E 3 HOH A 72 472 97 HOH HOH . 
E 3 HOH A 73 473 98 HOH HOH . 
E 3 HOH A 74 474 99 HOH HOH . 
E 3 HOH A 75 475 101 HOH HOH . 
E 3 HOH A 76 476 102 HOH HOH . 
E 3 HOH A 77 477 103 HOH HOH . 
E 3 HOH A 78 478 104 HOH HOH . 
E 3 HOH A 79 479 105 HOH HOH . 
E 3 HOH A 80 480 106 HOH HOH . 
E 3 HOH A 81 481 117 HOH HOH . 
E 3 HOH A 82 482 118 HOH HOH . 
E 3 HOH A 83 483 119 HOH HOH . 
E 3 HOH A 84 484 125 HOH HOH . 
E 3 HOH A 85 485 131 HOH HOH . 
E 3 HOH A 86 486 132 HOH HOH . 
E 3 HOH A 87 487 133 HOH HOH . 
E 3 HOH A 88 488 135 HOH HOH . 
E 3 HOH A 89 489 136 HOH HOH . 
E 3 HOH A 90 490 137 HOH HOH . 
E 3 HOH A 91 491 142 HOH HOH . 
E 3 HOH A 92 492 143 HOH HOH . 
E 3 HOH A 93 493 144 HOH HOH . 
E 3 HOH A 94 494 145 HOH HOH . 
E 3 HOH A 95 495 147 HOH HOH . 
E 3 HOH A 96 496 150 HOH HOH . 
E 3 HOH A 97 497 151 HOH HOH . 
E 3 HOH A 98 498 22 HOH HOH . 
F 3 HOH B 1 401 2 HOH HOH . 
F 3 HOH B 2 402 3 HOH HOH . 
F 3 HOH B 3 403 8 HOH HOH . 
F 3 HOH B 4 404 9 HOH HOH . 
F 3 HOH B 5 405 10 HOH HOH . 
F 3 HOH B 6 406 11 HOH HOH . 
F 3 HOH B 7 407 13 HOH HOH . 
F 3 HOH B 8 408 21 HOH HOH . 
F 3 HOH B 9 409 23 HOH HOH . 
F 3 HOH B 10 410 33 HOH HOH . 
F 3 HOH B 11 411 39 HOH HOH . 
F 3 HOH B 12 412 44 HOH HOH . 
F 3 HOH B 13 413 46 HOH HOH . 
F 3 HOH B 14 414 47 HOH HOH . 
F 3 HOH B 15 415 49 HOH HOH . 
F 3 HOH B 16 416 50 HOH HOH . 
F 3 HOH B 17 417 60 HOH HOH . 
F 3 HOH B 18 418 61 HOH HOH . 
F 3 HOH B 19 419 65 HOH HOH . 
F 3 HOH B 20 420 70 HOH HOH . 
F 3 HOH B 21 421 84 HOH HOH . 
F 3 HOH B 22 422 92 HOH HOH . 
F 3 HOH B 23 423 107 HOH HOH . 
F 3 HOH B 24 424 108 HOH HOH . 
F 3 HOH B 25 425 109 HOH HOH . 
F 3 HOH B 26 426 110 HOH HOH . 
F 3 HOH B 27 427 111 HOH HOH . 
F 3 HOH B 28 428 112 HOH HOH . 
F 3 HOH B 29 429 113 HOH HOH . 
F 3 HOH B 30 430 114 HOH HOH . 
F 3 HOH B 31 431 115 HOH HOH . 
F 3 HOH B 32 432 116 HOH HOH . 
F 3 HOH B 33 433 120 HOH HOH . 
F 3 HOH B 34 434 121 HOH HOH . 
F 3 HOH B 35 435 122 HOH HOH . 
F 3 HOH B 36 436 123 HOH HOH . 
F 3 HOH B 37 437 126 HOH HOH . 
F 3 HOH B 38 438 127 HOH HOH . 
F 3 HOH B 39 439 128 HOH HOH . 
F 3 HOH B 40 440 129 HOH HOH . 
F 3 HOH B 41 441 140 HOH HOH . 
F 3 HOH B 42 442 146 HOH HOH . 
F 3 HOH B 43 443 148 HOH HOH . 
F 3 HOH B 44 444 149 HOH HOH . 
F 3 HOH B 45 445 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P ATM . . . D 2 7.272 1.667 69.908 1 51.38 ? P ATM 301 B 1 
HETATM 2 O OP1 ATM . . . D 2 8.048 0.384 70.172 1 43.97 ? OP1 ATM 301 B 1 
HETATM 3 O OP2 ATM . . . D 2 8.155 2.779 69.461 1 51.12 ? OP2 ATM 301 B 1 
HETATM 4 O OP3 ATM . . . D 2 6.21 1.988 70.933 1 59.79 ? OP3 ATM 301 B 1 
HETATM 5 O O5' ATM . . . D 2 6.472 1.285 68.542 1 52.36 ? O5' ATM 301 B 1 
HETATM 6 C C5' ATM . . . D 2 5.624 2.139 67.791 1 50.16 ? C5' ATM 301 B 1 
HETATM 7 C C4' ATM . . . D 2 4.443 1.284 67.355 1 45.57 ? C4' ATM 301 B 1 
HETATM 8 O O4' ATM . . . D 2 4.698 0.766 66.046 1 41.09 ? O4' ATM 301 B 1 
HETATM 9 C C3' ATM . . . D 2 4.23 0.039 68.211 1 51.69 ? C3' ATM 301 B 1 
HETATM 10 N N3' ATM . . . D 2 3.217 0.215 69.242 1 62.63 ? N3' ATM 301 B 1 
HETATM 11 N N4' ATM . . . D 2 3.394 -0.437 70.308 1 76.21 ? N4' ATM 301 B 1 
HETATM 12 N N5' ATM . . . D 2 2.617 -0.421 71.363 1 55.08 ? N5' ATM 301 B 1 
HETATM 13 C C2' ATM . . . D 2 3.719 -1.023 67.273 1 45.56 ? C2' ATM 301 B 1 
HETATM 14 C C1' ATM . . . D 2 3.91 -0.414 65.892 1 40.14 ? C1' ATM 301 B 1 
HETATM 15 N N1 ATM . . . D 2 4.557 -1.413 65.033 1 37.24 ? N1 ATM 301 B 1 
HETATM 16 C C2 ATM . . . D 2 3.769 -2.29 64.281 1 34.5 ? C2 ATM 301 B 1 
HETATM 17 O O2 ATM . . . D 2 2.518 -2.214 64.315 1 35.81 ? O2 ATM 301 B 1 
HETATM 18 N N3 ATM . . . D 2 4.321 -3.202 63.463 1 35.01 ? N3 ATM 301 B 1 
HETATM 19 C C4 ATM . . . D 2 5.648 -3.335 63.354 1 33.93 ? C4 ATM 301 B 1 
HETATM 20 O O4 ATM . . . D 2 6.097 -4.244 62.598 1 36.31 ? O4 ATM 301 B 1 
HETATM 21 C C5 ATM . . . D 2 6.504 -2.459 64.163 1 36.03 ? C5 ATM 301 B 1 
HETATM 22 C C5A ATM . . . D 2 8.018 -2.515 64.092 1 39.98 ? C5A ATM 301 B 1 
HETATM 23 C C6 ATM . . . D 2 5.898 -1.49 64.964 1 37.16 ? C6 ATM 301 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#