data_4EB6
#
_model_server_result.job_id            -5Ghy9nINwSyYuhMW1Jilg 
_model_server_result.datetime_utc      '2024-11-27 02:03:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4eb6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    4EB6 
#
_exptl.entry_id    4EB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EB6 
_cell.length_a            64.69 
_cell.length_b            129.68 
_cell.length_c            252.75 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O1B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc2 F O2G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc3 G MG MG . A MG 502 1_555 R O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc4 G MG MG . A MG 502 1_555 R O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? 
metalc ? metalc5 G MG MG . A MG 502 1_555 R O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc6 G MG MG . A MG 502 1_555 R O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc7 L O1B GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc8 L O2G GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc9 M MG MG . C MG 502 1_555 T O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc10 M MG MG . C MG 502 1_555 T O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc11 M MG MG . C MG 502 1_555 T O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     4EB6 
_atom_sites.fract_transf_matrix[1][1]    0.015458 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007711 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 501 501 GTP GTP . 
G 5 MG A 1 502 502 MG MG . 
H 6 SO4 A 1 503 503 SO4 SO4 . 
I 6 SO4 A 1 504 504 SO4 SO4 . 
J 7 GDP B 1 501 501 GDP GDP . 
K 6 SO4 B 1 502 502 SO4 SO4 . 
L 4 GTP C 1 501 501 GTP GTP . 
M 5 MG C 1 502 502 MG MG . 
N 8 VLB C 1 503 503 VLB VLB . 
O 7 GDP D 1 501 501 GDP GDP . 
P 6 SO4 D 1 502 502 SO4 SO4 . 
Q 6 SO4 D 1 503 503 SO4 SO4 . 
R 9 HOH A 1 601 601 HOH HOH . 
R 9 HOH A 2 602 602 HOH HOH . 
R 9 HOH A 3 603 603 HOH HOH . 
R 9 HOH A 4 604 604 HOH HOH . 
R 9 HOH A 5 605 605 HOH HOH . 
S 9 HOH B 1 601 601 HOH HOH . 
S 9 HOH B 2 602 602 HOH HOH . 
S 9 HOH B 3 603 603 HOH HOH . 
T 9 HOH C 1 601 601 HOH HOH . 
T 9 HOH C 2 602 602 HOH HOH . 
T 9 HOH C 3 603 603 HOH HOH . 
T 9 HOH C 4 604 604 HOH HOH . 
T 9 HOH C 5 605 605 HOH HOH . 
T 9 HOH C 6 606 606 HOH HOH . 
T 9 HOH C 7 607 607 HOH HOH . 
T 9 HOH C 8 608 608 HOH HOH . 
T 9 HOH C 9 609 609 HOH HOH . 
T 9 HOH C 10 610 610 HOH HOH . 
T 9 HOH C 11 611 611 HOH HOH . 
T 9 HOH C 12 612 612 HOH HOH . 
T 9 HOH C 13 613 613 HOH HOH . 
U 9 HOH D 1 601 601 HOH HOH . 
U 9 HOH D 2 602 602 HOH HOH . 
U 9 HOH D 3 603 603 HOH HOH . 
U 9 HOH D 4 604 604 HOH HOH . 
U 9 HOH D 5 605 605 HOH HOH . 
U 9 HOH D 6 606 606 HOH HOH . 
U 9 HOH D 7 607 607 HOH HOH . 
U 9 HOH D 8 608 608 HOH HOH . 
U 9 HOH D 9 609 609 HOH HOH . 
V 9 HOH E 1 201 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . L 4 -17.922 125.417 104.962 1 141.78 ? PG GTP 501 C 1 
HETATM 2 O O1G GTP . . . L 4 -18.514 125.684 103.652 1 146.55 ? O1G GTP 501 C 1 
HETATM 3 O O2G GTP . . . L 4 -16.85 126.569 105.291 1 142.94 ? O2G GTP 501 C 1 
HETATM 4 O O3G GTP . . . L 4 -19.114 125.529 106.011 1 142.62 ? O3G GTP 501 C 1 
HETATM 5 O O3B GTP . . . L 4 -17.286 123.932 105.014 1 138.89 ? O3B GTP 501 C 1 
HETATM 6 P PB GTP . . . L 4 -15.683 123.834 105.292 1 138.27 ? PB GTP 501 C 1 
HETATM 7 O O1B GTP . . . L 4 -14.979 124.776 104.414 1 139.62 ? O1B GTP 501 C 1 
HETATM 8 O O2B GTP . . . L 4 -15.197 122.36 104.875 1 137.51 ? O2B GTP 501 C 1 
HETATM 9 O O3A GTP . . . L 4 -15.358 124.1 106.862 1 137.18 ? O3A GTP 501 C 1 
HETATM 10 P PA GTP . . . L 4 -13.935 123.543 107.451 1 136.97 ? PA GTP 501 C 1 
HETATM 11 O O1A GTP . . . L 4 -13.133 122.754 106.482 1 137.5 ? O1A GTP 501 C 1 
HETATM 12 O O2A GTP . . . L 4 -13.062 124.82 107.841 1 137.92 ? O2A GTP 501 C 1 
HETATM 13 O O5' GTP . . . L 4 -14.189 122.583 108.737 1 135.59 ? O5' GTP 501 C 1 
HETATM 14 C C5' GTP . . . L 4 -13.675 123.043 110.012 1 136.14 ? C5' GTP 501 C 1 
HETATM 15 C C4' GTP . . . L 4 -13.072 121.861 110.855 1 136.05 ? C4' GTP 501 C 1 
HETATM 16 O O4' GTP . . . L 4 -11.891 121.333 110.19 1 134.85 ? O4' GTP 501 C 1 
HETATM 17 C C3' GTP . . . L 4 -12.52 122.288 112.255 1 137.1 ? C3' GTP 501 C 1 
HETATM 18 O O3' GTP . . . L 4 -12.173 121.131 113.079 1 139.18 ? O3' GTP 501 C 1 
HETATM 19 C C2' GTP . . . L 4 -11.243 123.016 111.8 1 137.98 ? C2' GTP 501 C 1 
HETATM 20 O O2' GTP . . . L 4 -10.314 123.225 112.861 1 141.24 ? O2' GTP 501 C 1 
HETATM 21 C C1' GTP . . . L 4 -10.731 122.004 110.768 1 136.48 ? C1' GTP 501 C 1 
HETATM 22 N N9 GTP . . . L 4 -9.922 122.583 109.719 1 138.41 ? N9 GTP 501 C 1 
HETATM 23 C C8 GTP . . . L 4 -10.248 123.576 108.843 1 139.61 ? C8 GTP 501 C 1 
HETATM 24 N N7 GTP . . . L 4 -9.247 123.772 108.033 1 142.38 ? N7 GTP 501 C 1 
HETATM 25 C C5 GTP . . . L 4 -8.23 122.916 108.343 1 141.94 ? C5 GTP 501 C 1 
HETATM 26 C C6 GTP . . . L 4 -6.916 122.629 107.829 1 144.8 ? C6 GTP 501 C 1 
HETATM 27 O O6 GTP . . . L 4 -6.442 123.241 106.905 1 149.11 ? O6 GTP 501 C 1 
HETATM 28 N N1 GTP . . . L 4 -6.165 121.659 108.422 1 144.85 ? N1 GTP 501 C 1 
HETATM 29 C C2 GTP . . . L 4 -6.661 120.936 109.485 1 142.16 ? C2 GTP 501 C 1 
HETATM 30 N N2 GTP . . . L 4 -5.884 119.949 110.05 1 143.4 ? N2 GTP 501 C 1 
HETATM 31 N N3 GTP . . . L 4 -7.881 121.176 109.968 1 139.38 ? N3 GTP 501 C 1 
HETATM 32 C C4 GTP . . . L 4 -8.686 122.128 109.417 1 138.73 ? C4 GTP 501 C 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#