data_4EB7 # _model_server_result.job_id e0qSvgQSd8ai7aLcm4D3bw _model_server_result.datetime_utc '2025-02-20 15:51:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 4EB7 # _exptl.entry_id 4EB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EB7 _cell.length_a 75.469 _cell.length_b 96.129 _cell.length_c 152.793 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SG CYS 58 C CYS 58 1_555 J FE1 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 C NE2 HIS 101 C HIS 101 1_555 J FE2 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc3 C SG CYS 102 C CYS 102 1_555 J FE1 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 J FE2 FES . C FES 201 1_555 K S2 FES . C FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 4EB7 _atom_sites.fract_transf_matrix[1][1] 0.01325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PLP A 1 401 1 PLP PLP . E 4 GOL A 1 402 3 GOL GOL . F 4 GOL A 1 403 4 GOL GOL . G 5 EPE A 1 404 6 EPE EPE . H 3 PLP B 1 401 2 PLP PLP . I 4 GOL B 1 402 5 GOL GOL . J 6 FES C 1 201 7 FES FES . K 6 FES C 1 202 8 FES H2S . L 7 HOH A 1 501 1 HOH HOH . L 7 HOH A 2 502 2 HOH HOH . L 7 HOH A 3 503 3 HOH HOH . L 7 HOH A 4 504 4 HOH HOH . L 7 HOH A 5 505 5 HOH HOH . L 7 HOH A 6 506 6 HOH HOH . L 7 HOH A 7 507 7 HOH HOH . L 7 HOH A 8 508 8 HOH HOH . L 7 HOH A 9 509 9 HOH HOH . L 7 HOH A 10 510 10 HOH HOH . L 7 HOH A 11 511 11 HOH HOH . L 7 HOH A 12 512 12 HOH HOH . L 7 HOH A 13 513 13 HOH HOH . L 7 HOH A 14 514 14 HOH HOH . L 7 HOH A 15 515 15 HOH HOH . L 7 HOH A 16 516 23 HOH HOH . L 7 HOH A 17 517 24 HOH HOH . L 7 HOH A 18 518 29 HOH HOH . L 7 HOH A 19 519 30 HOH HOH . L 7 HOH A 20 520 34 HOH HOH . L 7 HOH A 21 521 35 HOH HOH . L 7 HOH A 22 522 36 HOH HOH . L 7 HOH A 23 523 37 HOH HOH . L 7 HOH A 24 524 40 HOH HOH . L 7 HOH A 25 525 46 HOH HOH . M 7 HOH B 1 501 16 HOH HOH . M 7 HOH B 2 502 17 HOH HOH . M 7 HOH B 3 503 18 HOH HOH . M 7 HOH B 4 504 19 HOH HOH . M 7 HOH B 5 505 20 HOH HOH . M 7 HOH B 6 506 21 HOH HOH . M 7 HOH B 7 507 22 HOH HOH . M 7 HOH B 8 508 31 HOH HOH . M 7 HOH B 9 509 33 HOH HOH . M 7 HOH B 10 510 38 HOH HOH . M 7 HOH B 11 511 39 HOH HOH . M 7 HOH B 12 512 42 HOH HOH . M 7 HOH B 13 513 43 HOH HOH . M 7 HOH B 14 514 44 HOH HOH . M 7 HOH B 15 515 45 HOH HOH . N 7 HOH C 1 301 25 HOH HOH . N 7 HOH C 2 302 26 HOH HOH . N 7 HOH C 3 303 27 HOH HOH . N 7 HOH C 4 304 28 HOH HOH . N 7 HOH C 5 305 32 HOH HOH . N 7 HOH C 6 306 41 HOH HOH . N 7 HOH C 7 307 47 HOH HOH . N 7 HOH C 8 308 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -17.349 11.24 1.185 1 51.01 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . E 4 -16.765 10.363 2.156 1 49.55 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . E 4 -18.828 11.305 1.502 1 50.76 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . E 4 -19.091 12.225 2.573 1 54.49 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . E 4 -19.548 11.841 0.303 1 50.1 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . E 4 -20.928 11.939 0.67 1 51.23 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #