data_4EB8 # _model_server_result.job_id 11-l7eyzCKIv9kzV_mLM5w _model_server_result.datetime_utc '2024-11-05 04:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4EB8 # _exptl.entry_id 4EB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EB8 _cell.length_a 55.752 _cell.length_b 131.035 _cell.length_c 137.503 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 I N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 308 n n P O2 PO4 sing 309 n n P O3 PO4 sing 310 n n P O4 PO4 sing 311 n n # _atom_sites.entry_id 4EB8 _atom_sites.fract_transf_matrix[1][1] 0.017937 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 301 1 PO4 PO4 . E 3 IM5 A 1 302 1 IM5 IM5 . F 2 PO4 B 1 301 2 PO4 PO4 . G 3 IM5 B 1 302 2 IM5 IM5 . H 4 EDO B 1 303 1 EDO EDO . I 2 PO4 C 1 301 3 PO4 PO4 . J 3 IM5 C 1 302 3 IM5 IM5 . K 4 EDO C 1 303 2 EDO EDO . L 5 HOH A 1 401 1 HOH HOH . L 5 HOH A 2 402 4 HOH HOH . L 5 HOH A 3 403 7 HOH HOH . L 5 HOH A 4 404 10 HOH HOH . L 5 HOH A 5 405 14 HOH HOH . L 5 HOH A 6 406 15 HOH HOH . L 5 HOH A 7 407 19 HOH HOH . L 5 HOH A 8 408 22 HOH HOH . L 5 HOH A 9 409 24 HOH HOH . L 5 HOH A 10 410 28 HOH HOH . L 5 HOH A 11 411 35 HOH HOH . L 5 HOH A 12 412 40 HOH HOH . L 5 HOH A 13 413 41 HOH HOH . L 5 HOH A 14 414 44 HOH HOH . L 5 HOH A 15 415 47 HOH HOH . L 5 HOH A 16 416 49 HOH HOH . L 5 HOH A 17 417 52 HOH HOH . L 5 HOH A 18 418 54 HOH HOH . L 5 HOH A 19 419 55 HOH HOH . L 5 HOH A 20 420 57 HOH HOH . L 5 HOH A 21 421 58 HOH HOH . L 5 HOH A 22 422 59 HOH HOH . L 5 HOH A 23 423 66 HOH HOH . L 5 HOH A 24 424 67 HOH HOH . L 5 HOH A 25 425 78 HOH HOH . L 5 HOH A 26 426 79 HOH HOH . L 5 HOH A 27 427 83 HOH HOH . L 5 HOH A 28 428 89 HOH HOH . L 5 HOH A 29 429 94 HOH HOH . L 5 HOH A 30 430 97 HOH HOH . L 5 HOH A 31 431 99 HOH HOH . L 5 HOH A 32 432 101 HOH HOH . L 5 HOH A 33 433 102 HOH HOH . L 5 HOH A 34 434 104 HOH HOH . L 5 HOH A 35 435 112 HOH HOH . L 5 HOH A 36 436 118 HOH HOH . L 5 HOH A 37 437 122 HOH HOH . L 5 HOH A 38 438 125 HOH HOH . L 5 HOH A 39 439 128 HOH HOH . L 5 HOH A 40 440 132 HOH HOH . L 5 HOH A 41 441 134 HOH HOH . L 5 HOH A 42 442 136 HOH HOH . L 5 HOH A 43 443 141 HOH HOH . L 5 HOH A 44 444 142 HOH HOH . L 5 HOH A 45 445 144 HOH HOH . L 5 HOH A 46 446 146 HOH HOH . L 5 HOH A 47 447 147 HOH HOH . L 5 HOH A 48 448 150 HOH HOH . L 5 HOH A 49 449 151 HOH HOH . L 5 HOH A 50 450 154 HOH HOH . L 5 HOH A 51 451 156 HOH HOH . L 5 HOH A 52 452 158 HOH HOH . L 5 HOH A 53 453 159 HOH HOH . L 5 HOH A 54 454 161 HOH HOH . L 5 HOH A 55 455 166 HOH HOH . L 5 HOH A 56 456 167 HOH HOH . L 5 HOH A 57 457 169 HOH HOH . L 5 HOH A 58 458 171 HOH HOH . L 5 HOH A 59 459 172 HOH HOH . L 5 HOH A 60 460 178 HOH HOH . L 5 HOH A 61 461 179 HOH HOH . L 5 HOH A 62 462 181 HOH HOH . L 5 HOH A 63 463 182 HOH HOH . L 5 HOH A 64 464 183 HOH HOH . L 5 HOH A 65 465 187 HOH HOH . L 5 HOH A 66 466 188 HOH HOH . L 5 HOH A 67 467 190 HOH HOH . L 5 HOH A 68 468 192 HOH HOH . L 5 HOH A 69 469 195 HOH HOH . L 5 HOH A 70 470 199 HOH HOH . L 5 HOH A 71 471 200 HOH HOH . L 5 HOH A 72 472 202 HOH HOH . L 5 HOH A 73 473 205 HOH HOH . L 5 HOH A 74 474 206 HOH HOH . L 5 HOH A 75 475 207 HOH HOH . L 5 HOH A 76 476 208 HOH HOH . L 5 HOH A 77 477 211 HOH HOH . L 5 HOH A 78 478 215 HOH HOH . L 5 HOH A 79 479 216 HOH HOH . L 5 HOH A 80 480 222 HOH HOH . L 5 HOH A 81 481 226 HOH HOH . L 5 HOH A 82 482 227 HOH HOH . L 5 HOH A 83 483 231 HOH HOH . L 5 HOH A 84 484 233 HOH HOH . L 5 HOH A 85 485 235 HOH HOH . L 5 HOH A 86 486 238 HOH HOH . L 5 HOH A 87 487 239 HOH HOH . L 5 HOH A 88 488 240 HOH HOH . L 5 HOH A 89 489 244 HOH HOH . L 5 HOH A 90 490 246 HOH HOH . L 5 HOH A 91 491 256 HOH HOH . L 5 HOH A 92 492 258 HOH HOH . L 5 HOH A 93 493 260 HOH HOH . L 5 HOH A 94 494 266 HOH HOH . L 5 HOH A 95 495 267 HOH HOH . L 5 HOH A 96 496 268 HOH HOH . L 5 HOH A 97 497 275 HOH HOH . L 5 HOH A 98 498 278 HOH HOH . L 5 HOH A 99 499 282 HOH HOH . L 5 HOH A 100 500 289 HOH HOH . L 5 HOH A 101 501 295 HOH HOH . L 5 HOH A 102 502 304 HOH HOH . L 5 HOH A 103 503 305 HOH HOH . L 5 HOH A 104 504 308 HOH HOH . L 5 HOH A 105 505 309 HOH HOH . L 5 HOH A 106 506 317 HOH HOH . L 5 HOH A 107 507 318 HOH HOH . L 5 HOH A 108 508 319 HOH HOH . L 5 HOH A 109 509 320 HOH HOH . L 5 HOH A 110 510 321 HOH HOH . M 5 HOH B 1 401 2 HOH HOH . M 5 HOH B 2 402 8 HOH HOH . M 5 HOH B 3 403 9 HOH HOH . M 5 HOH B 4 404 11 HOH HOH . M 5 HOH B 5 405 12 HOH HOH . M 5 HOH B 6 406 16 HOH HOH . M 5 HOH B 7 407 20 HOH HOH . M 5 HOH B 8 408 21 HOH HOH . M 5 HOH B 9 409 23 HOH HOH . M 5 HOH B 10 410 27 HOH HOH . M 5 HOH B 11 411 29 HOH HOH . M 5 HOH B 12 412 33 HOH HOH . M 5 HOH B 13 413 34 HOH HOH . M 5 HOH B 14 414 37 HOH HOH . M 5 HOH B 15 415 38 HOH HOH . M 5 HOH B 16 416 39 HOH HOH . M 5 HOH B 17 417 45 HOH HOH . M 5 HOH B 18 418 48 HOH HOH . M 5 HOH B 19 419 50 HOH HOH . M 5 HOH B 20 420 51 HOH HOH . M 5 HOH B 21 421 53 HOH HOH . M 5 HOH B 22 422 61 HOH HOH . M 5 HOH B 23 423 62 HOH HOH . M 5 HOH B 24 424 64 HOH HOH . M 5 HOH B 25 425 65 HOH HOH . M 5 HOH B 26 426 71 HOH HOH . M 5 HOH B 27 427 76 HOH HOH . M 5 HOH B 28 428 77 HOH HOH . M 5 HOH B 29 429 86 HOH HOH . M 5 HOH B 30 430 87 HOH HOH . M 5 HOH B 31 431 90 HOH HOH . M 5 HOH B 32 432 91 HOH HOH . M 5 HOH B 33 433 100 HOH HOH . M 5 HOH B 34 434 107 HOH HOH . M 5 HOH B 35 435 108 HOH HOH . M 5 HOH B 36 436 111 HOH HOH . M 5 HOH B 37 437 113 HOH HOH . M 5 HOH B 38 438 115 HOH HOH . M 5 HOH B 39 439 116 HOH HOH . M 5 HOH B 40 440 120 HOH HOH . M 5 HOH B 41 441 121 HOH HOH . M 5 HOH B 42 442 123 HOH HOH . M 5 HOH B 43 443 126 HOH HOH . M 5 HOH B 44 444 127 HOH HOH . M 5 HOH B 45 445 130 HOH HOH . M 5 HOH B 46 446 131 HOH HOH . M 5 HOH B 47 447 133 HOH HOH . M 5 HOH B 48 448 135 HOH HOH . M 5 HOH B 49 449 137 HOH HOH . M 5 HOH B 50 450 138 HOH HOH . M 5 HOH B 51 451 139 HOH HOH . M 5 HOH B 52 452 149 HOH HOH . M 5 HOH B 53 453 157 HOH HOH . M 5 HOH B 54 454 163 HOH HOH . M 5 HOH B 55 455 165 HOH HOH . M 5 HOH B 56 456 170 HOH HOH . M 5 HOH B 57 457 173 HOH HOH . M 5 HOH B 58 458 180 HOH HOH . M 5 HOH B 59 459 184 HOH HOH . M 5 HOH B 60 460 186 HOH HOH . M 5 HOH B 61 461 191 HOH HOH . M 5 HOH B 62 462 193 HOH HOH . M 5 HOH B 63 463 197 HOH HOH . M 5 HOH B 64 464 198 HOH HOH . M 5 HOH B 65 465 209 HOH HOH . M 5 HOH B 66 466 210 HOH HOH . M 5 HOH B 67 467 212 HOH HOH . M 5 HOH B 68 468 213 HOH HOH . M 5 HOH B 69 469 220 HOH HOH . M 5 HOH B 70 470 221 HOH HOH . M 5 HOH B 71 471 223 HOH HOH . M 5 HOH B 72 472 228 HOH HOH . M 5 HOH B 73 473 230 HOH HOH . M 5 HOH B 74 474 232 HOH HOH . M 5 HOH B 75 475 234 HOH HOH . M 5 HOH B 76 476 236 HOH HOH . M 5 HOH B 77 477 250 HOH HOH . M 5 HOH B 78 478 252 HOH HOH . M 5 HOH B 79 479 253 HOH HOH . M 5 HOH B 80 480 254 HOH HOH . M 5 HOH B 81 481 261 HOH HOH . M 5 HOH B 82 482 262 HOH HOH . M 5 HOH B 83 483 265 HOH HOH . M 5 HOH B 84 484 269 HOH HOH . M 5 HOH B 85 485 270 HOH HOH . M 5 HOH B 86 486 276 HOH HOH . M 5 HOH B 87 487 279 HOH HOH . M 5 HOH B 88 488 280 HOH HOH . M 5 HOH B 89 489 283 HOH HOH . M 5 HOH B 90 490 284 HOH HOH . M 5 HOH B 91 491 286 HOH HOH . M 5 HOH B 92 492 288 HOH HOH . M 5 HOH B 93 493 290 HOH HOH . M 5 HOH B 94 494 291 HOH HOH . M 5 HOH B 95 495 298 HOH HOH . M 5 HOH B 96 496 300 HOH HOH . M 5 HOH B 97 497 307 HOH HOH . M 5 HOH B 98 498 310 HOH HOH . M 5 HOH B 99 499 311 HOH HOH . M 5 HOH B 100 500 314 HOH HOH . M 5 HOH B 101 501 322 HOH HOH . N 5 HOH C 1 401 3 HOH HOH . N 5 HOH C 2 402 5 HOH HOH . N 5 HOH C 3 403 6 HOH HOH . N 5 HOH C 4 404 13 HOH HOH . N 5 HOH C 5 405 17 HOH HOH . N 5 HOH C 6 406 18 HOH HOH . N 5 HOH C 7 407 25 HOH HOH . N 5 HOH C 8 408 26 HOH HOH . N 5 HOH C 9 409 30 HOH HOH . N 5 HOH C 10 410 31 HOH HOH . N 5 HOH C 11 411 32 HOH HOH . N 5 HOH C 12 412 36 HOH HOH . N 5 HOH C 13 413 42 HOH HOH . N 5 HOH C 14 414 43 HOH HOH . N 5 HOH C 15 415 46 HOH HOH . N 5 HOH C 16 416 56 HOH HOH . N 5 HOH C 17 417 60 HOH HOH . N 5 HOH C 18 418 63 HOH HOH . N 5 HOH C 19 419 68 HOH HOH . N 5 HOH C 20 420 69 HOH HOH . N 5 HOH C 21 421 70 HOH HOH . N 5 HOH C 22 422 72 HOH HOH . N 5 HOH C 23 423 73 HOH HOH . N 5 HOH C 24 424 74 HOH HOH . N 5 HOH C 25 425 75 HOH HOH . N 5 HOH C 26 426 80 HOH HOH . N 5 HOH C 27 427 81 HOH HOH . N 5 HOH C 28 428 82 HOH HOH . N 5 HOH C 29 429 84 HOH HOH . N 5 HOH C 30 430 85 HOH HOH . N 5 HOH C 31 431 88 HOH HOH . N 5 HOH C 32 432 92 HOH HOH . N 5 HOH C 33 433 93 HOH HOH . N 5 HOH C 34 434 95 HOH HOH . N 5 HOH C 35 435 96 HOH HOH . N 5 HOH C 36 436 98 HOH HOH . N 5 HOH C 37 437 103 HOH HOH . N 5 HOH C 38 438 105 HOH HOH . N 5 HOH C 39 439 106 HOH HOH . N 5 HOH C 40 440 109 HOH HOH . N 5 HOH C 41 441 110 HOH HOH . N 5 HOH C 42 442 114 HOH HOH . N 5 HOH C 43 443 117 HOH HOH . N 5 HOH C 44 444 119 HOH HOH . N 5 HOH C 45 445 124 HOH HOH . N 5 HOH C 46 446 129 HOH HOH . N 5 HOH C 47 447 140 HOH HOH . N 5 HOH C 48 448 143 HOH HOH . N 5 HOH C 49 449 145 HOH HOH . N 5 HOH C 50 450 148 HOH HOH . N 5 HOH C 51 451 152 HOH HOH . N 5 HOH C 52 452 153 HOH HOH . N 5 HOH C 53 453 155 HOH HOH . N 5 HOH C 54 454 160 HOH HOH . N 5 HOH C 55 455 162 HOH HOH . N 5 HOH C 56 456 164 HOH HOH . N 5 HOH C 57 457 168 HOH HOH . N 5 HOH C 58 458 174 HOH HOH . N 5 HOH C 59 459 175 HOH HOH . N 5 HOH C 60 460 176 HOH HOH . N 5 HOH C 61 461 177 HOH HOH . N 5 HOH C 62 462 185 HOH HOH . N 5 HOH C 63 463 189 HOH HOH . N 5 HOH C 64 464 194 HOH HOH . N 5 HOH C 65 465 196 HOH HOH . N 5 HOH C 66 466 201 HOH HOH . N 5 HOH C 67 467 203 HOH HOH . N 5 HOH C 68 468 204 HOH HOH . N 5 HOH C 69 469 214 HOH HOH . N 5 HOH C 70 470 217 HOH HOH . N 5 HOH C 71 471 218 HOH HOH . N 5 HOH C 72 472 219 HOH HOH . N 5 HOH C 73 473 224 HOH HOH . N 5 HOH C 74 474 225 HOH HOH . N 5 HOH C 75 475 229 HOH HOH . N 5 HOH C 76 476 237 HOH HOH . N 5 HOH C 77 477 241 HOH HOH . N 5 HOH C 78 478 242 HOH HOH . N 5 HOH C 79 479 243 HOH HOH . N 5 HOH C 80 480 245 HOH HOH . N 5 HOH C 81 481 247 HOH HOH . N 5 HOH C 82 482 248 HOH HOH . N 5 HOH C 83 483 249 HOH HOH . N 5 HOH C 84 484 251 HOH HOH . N 5 HOH C 85 485 255 HOH HOH . N 5 HOH C 86 486 257 HOH HOH . N 5 HOH C 87 487 259 HOH HOH . N 5 HOH C 88 488 263 HOH HOH . N 5 HOH C 89 489 264 HOH HOH . N 5 HOH C 90 490 271 HOH HOH . N 5 HOH C 91 491 272 HOH HOH . N 5 HOH C 92 492 273 HOH HOH . N 5 HOH C 93 493 274 HOH HOH . N 5 HOH C 94 494 277 HOH HOH . N 5 HOH C 95 495 281 HOH HOH . N 5 HOH C 96 496 285 HOH HOH . N 5 HOH C 97 497 287 HOH HOH . N 5 HOH C 98 498 292 HOH HOH . N 5 HOH C 99 499 293 HOH HOH . N 5 HOH C 100 500 294 HOH HOH . N 5 HOH C 101 501 296 HOH HOH . N 5 HOH C 102 502 297 HOH HOH . N 5 HOH C 103 503 299 HOH HOH . N 5 HOH C 104 504 301 HOH HOH . N 5 HOH C 105 505 302 HOH HOH . N 5 HOH C 106 506 303 HOH HOH . N 5 HOH C 107 507 306 HOH HOH . N 5 HOH C 108 508 312 HOH HOH . N 5 HOH C 109 509 313 HOH HOH . N 5 HOH C 110 510 315 HOH HOH . N 5 HOH C 111 511 316 HOH HOH . N 5 HOH C 112 512 323 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 15.011 -25.143 -13.441 1 33.42 ? P PO4 301 A 1 HETATM 2 O O1 PO4 . . . D 2 15.384 -24.253 -14.615 1 32 ? O1 PO4 301 A 1 HETATM 3 O O2 PO4 . . . D 2 13.557 -25.004 -13.02 1 32.67 ? O2 PO4 301 A 1 HETATM 4 O O3 PO4 . . . D 2 15.242 -26.573 -13.889 1 31.69 ? O3 PO4 301 A 1 HETATM 5 O O4 PO4 . . . D 2 15.876 -24.752 -12.271 1 35.77 ? O4 PO4 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #