data_4EBN # _model_server_result.job_id nPjGjT3pipfHRa_Z2f2YTw _model_server_result.datetime_utc '2024-11-24 00:24:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ebn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4EBN # _exptl.entry_id 4EBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.42 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{1-[2-AMINO-2-(4-HYDROXY-PHENYL)-ACETYLAMINO]-2-OXO-ETHYL}-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.52 _cell.angle_gamma 90 _cell.entry_id 4EBN _cell.length_a 79.567 _cell.length_b 96.672 _cell.length_c 109.808 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG SER 42 B SER 70 1_555 H C1 AXL . B AXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 C OG SER 42 C SER 70 1_555 I C1 AXL . C AXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? # _chem_comp.formula 'C16 H21 N3 O5 S' _chem_comp.formula_weight 367.42 _chem_comp.id AXL _chem_comp.mon_nstd_flag . _chem_comp.name '2-{1-[2-AMINO-2-(4-HYDROXY-PHENYL)-ACETYLAMINO]-2-OXO-ETHYL}-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMOXICILLIN, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AXL doub 70 n n C1 C2 AXL sing 71 n n C1 HC1 AXL sing 72 n n C2 C3 AXL sing 73 n n C2 N8 AXL sing 74 n n C2 HC2 AXL sing 75 n n C3 S4 AXL sing 76 n n C3 N7 AXL sing 77 n n C3 HC3 AXL sing 78 n n S4 C5 AXL sing 79 n n C5 C51 AXL sing 80 n n C5 C52 AXL sing 81 n n C5 C6 AXL sing 82 n n C51 H511 AXL sing 83 n n C51 H512 AXL sing 84 n n C51 H513 AXL sing 85 n n C52 H521 AXL sing 86 n n C52 H522 AXL sing 87 n n C52 H523 AXL sing 88 n n C6 C61 AXL sing 89 n n C6 N7 AXL sing 90 n n C6 HC6 AXL sing 91 n n C61 O62 AXL sing 92 n n C61 O63 AXL doub 93 n n O62 H62O AXL sing 94 n n N7 HN7 AXL sing 95 n n N8 C9 AXL sing 96 n n N8 HN8 AXL sing 97 n n C9 O91 AXL doub 98 n n C9 C10 AXL sing 99 n n C10 N11 AXL sing 100 n n C10 C12 AXL sing 101 n n C10 H10 AXL sing 102 n n N11 H111 AXL sing 103 n n N11 H112 AXL sing 104 n n C12 C13 AXL doub 105 n y C12 C17 AXL sing 106 n y C13 C14 AXL sing 107 n y C13 H13 AXL sing 108 n n C14 C15 AXL doub 109 n y C14 H14 AXL sing 110 n n C15 C16 AXL sing 111 n y C15 O18 AXL sing 112 n n C16 C17 AXL doub 113 n y C16 H16 AXL sing 114 n n C17 H17 AXL sing 115 n n O18 H18O AXL sing 116 n n # _atom_sites.entry_id 4EBN _atom_sites.fract_transf_matrix[1][1] 0.012568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003968 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 301 1 PO4 PO4 . F 2 PO4 A 1 302 5 PO4 PO4 . G 2 PO4 A 1 303 7 PO4 PO4 . H 3 AXL B 1 301 70 AXL AXL . I 3 AXL C 1 301 70 AXL AXL . J 2 PO4 C 1 302 3 PO4 PO4 . K 2 PO4 D 1 301 4 PO4 PO4 . L 2 PO4 D 1 302 6 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AXL . . . H 3 12.699 10.955 28.686 0.8 62.39 ? C1 AXL 301 B 1 HETATM 2 O O1 AXL . . . H 3 12.706 10.753 29.896 0.8 60.88 ? O1 AXL 301 B 1 HETATM 3 C C2 AXL . . . H 3 13.995 11.079 27.895 0.8 62.8 ? C2 AXL 301 B 1 HETATM 4 C C3 AXL . . . H 3 14.463 9.675 27.552 0.8 63.17 ? C3 AXL 301 B 1 HETATM 5 S S4 AXL . . . H 3 15.613 9.647 26.152 0.8 58.21 ? S4 AXL 301 B 1 HETATM 6 C C5 AXL . . . H 3 16.597 8.247 26.765 0.8 61.63 ? C5 AXL 301 B 1 HETATM 7 C C51 AXL . . . H 3 18.049 8.68 26.956 0.8 61.66 ? C51 AXL 301 B 1 HETATM 8 C C52 AXL . . . H 3 16.489 7.08 25.784 0.8 60.58 ? C52 AXL 301 B 1 HETATM 9 C C6 AXL . . . H 3 15.918 7.923 28.107 0.8 62.13 ? C6 AXL 301 B 1 HETATM 10 C C61 AXL . . . H 3 14.761 6.952 27.897 0.8 58.98 ? C61 AXL 301 B 1 HETATM 11 O O62 AXL . . . H 3 14.613 6.055 28.75 0.8 56.09 ? O62 AXL 301 B 1 HETATM 12 O O63 AXL . . . H 3 14.037 7.146 26.902 0.8 59.72 ? O63 AXL 301 B 1 HETATM 13 N N7 AXL . . . H 3 15.36 9.194 28.61 0.8 64.15 ? N7 AXL 301 B 1 HETATM 14 N N8 AXL . . . H 3 15.032 11.719 28.71 0.8 62.73 ? N8 AXL 301 B 1 HETATM 15 C C9 AXL . . . H 3 15.881 12.602 28.199 0.8 61.63 ? C9 AXL 301 B 1 HETATM 16 O O91 AXL . . . H 3 15.874 12.964 27.027 0.8 60.8 ? O91 AXL 301 B 1 HETATM 17 C C10 AXL . . . H 3 16.916 13.14 29.177 0.8 61.89 ? C10 AXL 301 B 1 HETATM 18 N N11 AXL . . . H 3 17.273 14.514 28.81 0.8 62.18 ? N11 AXL 301 B 1 HETATM 19 C C12 AXL . . . H 3 18.154 12.256 29.083 0.8 60.97 ? C12 AXL 301 B 1 HETATM 20 C C13 AXL . . . H 3 18.564 11.781 27.847 0.8 60.22 ? C13 AXL 301 B 1 HETATM 21 C C14 AXL . . . H 3 19.687 10.972 27.751 0.8 60.12 ? C14 AXL 301 B 1 HETATM 22 C C15 AXL . . . H 3 20.398 10.64 28.894 0.8 60.63 ? C15 AXL 301 B 1 HETATM 23 C C16 AXL . . . H 3 19.987 11.115 30.132 0.8 60.96 ? C16 AXL 301 B 1 HETATM 24 C C17 AXL . . . H 3 18.864 11.923 30.227 0.8 61.06 ? C17 AXL 301 B 1 HETATM 25 O O18 AXL . . . H 3 21.498 9.849 28.8 0.8 59.84 ? O18 AXL 301 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #