data_4EBP # _model_server_result.job_id 9YtG-ocWeboSAHKnaeQ6tw _model_server_result.datetime_utc '2024-11-24 10:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ebp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 4EBP # _exptl.entry_id 4EBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.429 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CEFOTAXIME,C3' cleaved,open,bound form" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.34 _cell.angle_gamma 90 _cell.entry_id 4EBP _cell.length_a 78.82 _cell.length_b 96.152 _cell.length_c 107.088 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,P 1 1 B,I,J,Q 2 1 C,K,L,R 3 1 D,M,N,O,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG SER 42 B SER 70 1_555 I C8 CEF . B CEF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale2 C OG SER 42 C SER 70 1_555 K C8 CEF . C CEF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? # _chem_comp.formula 'C14 H15 N5 O5 S2' _chem_comp.formula_weight 397.429 _chem_comp.id CEF _chem_comp.mon_nstd_flag . _chem_comp.name "CEFOTAXIME, C3' cleaved, open, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 CEF sing 70 n n S1 C6 CEF sing 71 n n C1 C2 CEF sing 72 n n C1 H1 CEF sing 73 n n C1 H2 CEF sing 74 n n C2 C3 CEF doub 75 n n C2 C4 CEF sing 76 n n C3 H3 CEF sing 77 n n C3 H4 CEF sing 78 n n C4 C5 CEF sing 79 n n C4 N1 CEF doub 80 n n C5 O1 CEF doub 81 n n C5 O2 CEF sing 82 n n O2 H5 CEF sing 83 n n N1 C6 CEF sing 84 n n C6 C7 CEF sing 85 n n C6 H6 CEF sing 86 n n C7 C8 CEF sing 87 n n C7 N2 CEF sing 88 n n C7 H7 CEF sing 89 n n C8 O3 CEF doub 90 n n C8 H8 CEF sing 91 n n N2 C9 CEF sing 92 n n N2 H9 CEF sing 93 n n C9 O4 CEF doub 94 n n C9 C10 CEF sing 95 n n C10 N3 CEF doub 96 z n C10 C12 CEF sing 97 n n N3 O5 CEF sing 98 n n O5 C11 CEF sing 99 n n C11 H10 CEF sing 100 n n C11 H11 CEF sing 101 n n C11 H12 CEF sing 102 n n C12 C13 CEF doub 103 n y C12 N5 CEF sing 104 n y C13 S2 CEF sing 105 n y C13 H13 CEF sing 106 n n S2 C14 CEF sing 107 n y C14 N4 CEF sing 108 n n C14 N5 CEF doub 109 n y N4 H14 CEF sing 110 n n N4 H15 CEF sing 111 n n # _atom_sites.entry_id 4EBP _atom_sites.fract_transf_matrix[1][1] 0.012687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003719 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 301 1 PO4 PO4 . F 2 PO4 A 1 302 5 PO4 PO4 . G 2 PO4 A 1 303 6 PO4 PO4 . H 2 PO4 A 1 304 9 PO4 PO4 . I 3 CEF B 1 301 70 CEF PCZ . J 2 PO4 B 1 302 3 PO4 PO4 . K 3 CEF C 1 301 70 CEF PCZ . L 2 PO4 C 1 302 4 PO4 PO4 . M 2 PO4 D 1 301 2 PO4 PO4 . N 2 PO4 D 1 302 7 PO4 PO4 . O 2 PO4 D 1 303 8 PO4 PO4 . P 4 HOH A 1 401 9 HOH HOH . P 4 HOH A 2 402 11 HOH HOH . P 4 HOH A 3 403 12 HOH HOH . P 4 HOH A 4 404 15 HOH HOH . P 4 HOH A 5 405 20 HOH HOH . P 4 HOH A 6 406 22 HOH HOH . P 4 HOH A 7 407 32 HOH HOH . P 4 HOH A 8 408 33 HOH HOH . P 4 HOH A 9 409 36 HOH HOH . P 4 HOH A 10 410 37 HOH HOH . P 4 HOH A 11 411 45 HOH HOH . P 4 HOH A 12 412 50 HOH HOH . P 4 HOH A 13 413 52 HOH HOH . P 4 HOH A 14 414 54 HOH HOH . P 4 HOH A 15 415 55 HOH HOH . P 4 HOH A 16 416 70 HOH HOH . P 4 HOH A 17 417 77 HOH HOH . P 4 HOH A 18 418 107 HOH HOH . P 4 HOH A 19 419 124 HOH HOH . P 4 HOH A 20 420 145 HOH HOH . P 4 HOH A 21 421 152 HOH HOH . P 4 HOH A 22 422 159 HOH HOH . P 4 HOH A 23 423 174 HOH HOH . P 4 HOH A 24 424 205 HOH HOH . P 4 HOH A 25 425 241 HOH HOH . P 4 HOH A 26 426 247 HOH HOH . P 4 HOH A 27 427 272 HOH HOH . P 4 HOH A 28 428 277 HOH HOH . P 4 HOH A 29 429 278 HOH HOH . P 4 HOH A 30 430 279 HOH HOH . P 4 HOH A 31 431 282 HOH HOH . P 4 HOH A 32 432 283 HOH HOH . Q 4 HOH B 1 401 10 HOH HOH . Q 4 HOH B 2 402 16 HOH HOH . Q 4 HOH B 3 403 38 HOH HOH . Q 4 HOH B 4 404 40 HOH HOH . Q 4 HOH B 5 405 47 HOH HOH . Q 4 HOH B 6 406 48 HOH HOH . Q 4 HOH B 7 407 51 HOH HOH . Q 4 HOH B 8 408 62 HOH HOH . Q 4 HOH B 9 409 74 HOH HOH . Q 4 HOH B 10 410 75 HOH HOH . Q 4 HOH B 11 411 76 HOH HOH . Q 4 HOH B 12 412 79 HOH HOH . Q 4 HOH B 13 413 90 HOH HOH . Q 4 HOH B 14 414 100 HOH HOH . Q 4 HOH B 15 415 101 HOH HOH . Q 4 HOH B 16 416 104 HOH HOH . Q 4 HOH B 17 417 105 HOH HOH . Q 4 HOH B 18 418 119 HOH HOH . Q 4 HOH B 19 419 129 HOH HOH . Q 4 HOH B 20 420 140 HOH HOH . Q 4 HOH B 21 421 141 HOH HOH . Q 4 HOH B 22 422 149 HOH HOH . Q 4 HOH B 23 423 160 HOH HOH . Q 4 HOH B 24 424 161 HOH HOH . Q 4 HOH B 25 425 164 HOH HOH . Q 4 HOH B 26 426 165 HOH HOH . Q 4 HOH B 27 427 197 HOH HOH . Q 4 HOH B 28 428 217 HOH HOH . Q 4 HOH B 29 429 225 HOH HOH . Q 4 HOH B 30 430 243 HOH HOH . Q 4 HOH B 31 431 270 HOH HOH . Q 4 HOH B 32 432 271 HOH HOH . Q 4 HOH B 33 433 273 HOH HOH . Q 4 HOH B 34 434 275 HOH HOH . Q 4 HOH B 35 435 276 HOH HOH . Q 4 HOH B 36 436 285 HOH HOH . Q 4 HOH B 37 437 287 HOH HOH . R 4 HOH C 1 401 7 HOH HOH . R 4 HOH C 2 402 14 HOH HOH . R 4 HOH C 3 403 18 HOH HOH . R 4 HOH C 4 404 23 HOH HOH . R 4 HOH C 5 405 24 HOH HOH . R 4 HOH C 6 406 27 HOH HOH . R 4 HOH C 7 407 34 HOH HOH . R 4 HOH C 8 408 35 HOH HOH . R 4 HOH C 9 409 39 HOH HOH . R 4 HOH C 10 410 57 HOH HOH . R 4 HOH C 11 411 60 HOH HOH . R 4 HOH C 12 412 64 HOH HOH . R 4 HOH C 13 413 71 HOH HOH . R 4 HOH C 14 414 72 HOH HOH . R 4 HOH C 15 415 80 HOH HOH . R 4 HOH C 16 416 84 HOH HOH . R 4 HOH C 17 417 88 HOH HOH . R 4 HOH C 18 418 95 HOH HOH . R 4 HOH C 19 419 98 HOH HOH . R 4 HOH C 20 420 126 HOH HOH . R 4 HOH C 21 421 153 HOH HOH . R 4 HOH C 22 422 166 HOH HOH . R 4 HOH C 23 423 178 HOH HOH . R 4 HOH C 24 424 180 HOH HOH . R 4 HOH C 25 425 223 HOH HOH . R 4 HOH C 26 426 245 HOH HOH . R 4 HOH C 27 427 258 HOH HOH . R 4 HOH C 28 428 267 HOH HOH . R 4 HOH C 29 429 274 HOH HOH . R 4 HOH C 30 430 280 HOH HOH . R 4 HOH C 31 431 281 HOH HOH . R 4 HOH C 32 432 286 HOH HOH . R 4 HOH C 33 433 293 HOH HOH . S 4 HOH D 1 401 13 HOH HOH . S 4 HOH D 2 402 28 HOH HOH . S 4 HOH D 3 403 56 HOH HOH . S 4 HOH D 4 404 69 HOH HOH . S 4 HOH D 5 405 73 HOH HOH . S 4 HOH D 6 406 83 HOH HOH . S 4 HOH D 7 407 94 HOH HOH . S 4 HOH D 8 408 99 HOH HOH . S 4 HOH D 9 409 118 HOH HOH . S 4 HOH D 10 410 120 HOH HOH . S 4 HOH D 11 411 123 HOH HOH . S 4 HOH D 12 412 134 HOH HOH . S 4 HOH D 13 413 137 HOH HOH . S 4 HOH D 14 414 172 HOH HOH . S 4 HOH D 15 415 181 HOH HOH . S 4 HOH D 16 416 204 HOH HOH . S 4 HOH D 17 417 288 HOH HOH . S 4 HOH D 18 418 289 HOH HOH . S 4 HOH D 19 419 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CEF . . . I 3 16.517 10.271 25.126 1 47.65 ? S1 CEF 301 B 1 HETATM 2 C C1 CEF . . . I 3 17.486 9.039 25.861 1 61.97 ? C1 CEF 301 B 1 HETATM 3 C C2 CEF . . . I 3 16.925 8.016 26.612 1 59.61 ? C2 CEF 301 B 1 HETATM 4 C C3 CEF . . . I 3 17.773 7.065 27.166 1 59.8 ? C3 CEF 301 B 1 HETATM 5 C C4 CEF . . . I 3 15.556 7.891 26.841 1 54.74 ? C4 CEF 301 B 1 HETATM 6 C C5 CEF . . . I 3 15.087 6.709 27.689 1 50.96 ? C5 CEF 301 B 1 HETATM 7 O O1 CEF . . . I 3 13.86 6.597 27.893 1 53.85 ? O1 CEF 301 B 1 HETATM 8 O O2 CEF . . . I 3 15.95 5.923 28.13 1 47.12 ? O2 CEF 301 B 1 HETATM 9 N N1 CEF . . . I 3 14.607 8.723 26.378 1 52.74 ? N1 CEF 301 B 1 HETATM 10 C C6 CEF . . . I 3 14.775 9.928 25.544 1 50.84 ? C6 CEF 301 B 1 HETATM 11 C C7 CEF . . . I 3 14.171 11.124 26.28 1 55.3 ? C7 CEF 301 B 1 HETATM 12 C C8 CEF . . . I 3 13.118 10.634 27.276 1 47.6 ? C8 CEF 301 B 1 HETATM 13 O O3 CEF . . . I 3 13.389 10.491 28.467 1 43.19 ? O3 CEF 301 B 1 HETATM 14 N N2 CEF . . . I 3 15.24 11.849 26.981 1 64.81 ? N2 CEF 301 B 1 HETATM 15 C C9 CEF . . . I 3 14.983 12.756 27.916 1 75.39 ? C9 CEF 301 B 1 HETATM 16 O O4 CEF . . . I 3 13.85 13.064 28.283 1 79.78 ? O4 CEF 301 B 1 HETATM 17 C C10 CEF . . . I 3 16.215 13.413 28.534 1 80.53 ? C10 CEF 301 B 1 HETATM 18 N N3 CEF . . . I 3 17.432 13.067 28.126 1 79.66 ? N3 CEF 301 B 1 HETATM 19 O O5 CEF . . . I 3 18.525 13.652 28.679 1 79.44 ? O5 CEF 301 B 1 HETATM 20 C C11 CEF . . . I 3 19.439 12.64 29.106 1 80.01 ? C11 CEF 301 B 1 HETATM 21 C C12 CEF . . . I 3 16.056 14.373 29.523 1 84.54 ? C12 CEF 301 B 1 HETATM 22 C C13 CEF . . . I 3 17.242 15.087 30.203 1 86.37 ? C13 CEF 301 B 1 HETATM 23 S S2 CEF . . . I 3 16.404 16.189 31.369 1 153.45 ? S2 CEF 301 B 1 HETATM 24 C C14 CEF . . . I 3 14.821 15.693 30.933 1 90.93 ? C14 CEF 301 B 1 HETATM 25 N N4 CEF . . . I 3 13.708 16.177 31.477 1 92.08 ? N4 CEF 301 B 1 HETATM 26 N N5 CEF . . . I 3 14.844 14.759 29.975 1 87.4 ? N5 CEF 301 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #