data_4EBP
#
_model_server_result.job_id            3G_Cv3mzcpJ7tGlb5u1HdA 
_model_server_result.datetime_utc      '2024-10-14 11:27:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ebp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    4EBP 
#
_exptl.entry_id    4EBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              397.429 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CEFOTAXIME,C3' cleaved,open,bound form" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.34 
_cell.angle_gamma         90 
_cell.entry_id            4EBP 
_cell.length_a            78.82 
_cell.length_b            96.152 
_cell.length_c            107.088 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,P 1 1 
B,I,J,Q 2 1 
C,K,L,R 3 1 
D,M,N,O,S 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG SER 42 B SER 70 1_555 I C8 CEF . B CEF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale2 C OG SER 42 C SER 70 1_555 K C8 CEF . C CEF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
#
_chem_comp.formula           'C14 H15 N5 O5 S2' 
_chem_comp.formula_weight    397.429 
_chem_comp.id                CEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CEFOTAXIME, C3' cleaved, open, bound form" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 CEF sing 70 n n 
S1 C6 CEF sing 71 n n 
C1 C2 CEF sing 72 n n 
C1 H1 CEF sing 73 n n 
C1 H2 CEF sing 74 n n 
C2 C3 CEF doub 75 n n 
C2 C4 CEF sing 76 n n 
C3 H3 CEF sing 77 n n 
C3 H4 CEF sing 78 n n 
C4 C5 CEF sing 79 n n 
C4 N1 CEF doub 80 n n 
C5 O1 CEF doub 81 n n 
C5 O2 CEF sing 82 n n 
O2 H5 CEF sing 83 n n 
N1 C6 CEF sing 84 n n 
C6 C7 CEF sing 85 n n 
C6 H6 CEF sing 86 n n 
C7 C8 CEF sing 87 n n 
C7 N2 CEF sing 88 n n 
C7 H7 CEF sing 89 n n 
C8 O3 CEF doub 90 n n 
C8 H8 CEF sing 91 n n 
N2 C9 CEF sing 92 n n 
N2 H9 CEF sing 93 n n 
C9 O4 CEF doub 94 n n 
C9 C10 CEF sing 95 n n 
C10 N3 CEF doub 96 z n 
C10 C12 CEF sing 97 n n 
N3 O5 CEF sing 98 n n 
O5 C11 CEF sing 99 n n 
C11 H10 CEF sing 100 n n 
C11 H11 CEF sing 101 n n 
C11 H12 CEF sing 102 n n 
C12 C13 CEF doub 103 n y 
C12 N5 CEF sing 104 n y 
C13 S2 CEF sing 105 n y 
C13 H13 CEF sing 106 n n 
S2 C14 CEF sing 107 n y 
C14 N4 CEF sing 108 n n 
C14 N5 CEF doub 109 n y 
N4 H14 CEF sing 110 n n 
N4 H15 CEF sing 111 n n 
#
_atom_sites.entry_id                     4EBP 
_atom_sites.fract_transf_matrix[1][1]    0.012687 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003719 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 301 1 PO4 PO4 . 
F 2 PO4 A 1 302 5 PO4 PO4 . 
G 2 PO4 A 1 303 6 PO4 PO4 . 
H 2 PO4 A 1 304 9 PO4 PO4 . 
I 3 CEF B 1 301 70 CEF PCZ . 
J 2 PO4 B 1 302 3 PO4 PO4 . 
K 3 CEF C 1 301 70 CEF PCZ . 
L 2 PO4 C 1 302 4 PO4 PO4 . 
M 2 PO4 D 1 301 2 PO4 PO4 . 
N 2 PO4 D 1 302 7 PO4 PO4 . 
O 2 PO4 D 1 303 8 PO4 PO4 . 
P 4 HOH A 1 401 9 HOH HOH . 
P 4 HOH A 2 402 11 HOH HOH . 
P 4 HOH A 3 403 12 HOH HOH . 
P 4 HOH A 4 404 15 HOH HOH . 
P 4 HOH A 5 405 20 HOH HOH . 
P 4 HOH A 6 406 22 HOH HOH . 
P 4 HOH A 7 407 32 HOH HOH . 
P 4 HOH A 8 408 33 HOH HOH . 
P 4 HOH A 9 409 36 HOH HOH . 
P 4 HOH A 10 410 37 HOH HOH . 
P 4 HOH A 11 411 45 HOH HOH . 
P 4 HOH A 12 412 50 HOH HOH . 
P 4 HOH A 13 413 52 HOH HOH . 
P 4 HOH A 14 414 54 HOH HOH . 
P 4 HOH A 15 415 55 HOH HOH . 
P 4 HOH A 16 416 70 HOH HOH . 
P 4 HOH A 17 417 77 HOH HOH . 
P 4 HOH A 18 418 107 HOH HOH . 
P 4 HOH A 19 419 124 HOH HOH . 
P 4 HOH A 20 420 145 HOH HOH . 
P 4 HOH A 21 421 152 HOH HOH . 
P 4 HOH A 22 422 159 HOH HOH . 
P 4 HOH A 23 423 174 HOH HOH . 
P 4 HOH A 24 424 205 HOH HOH . 
P 4 HOH A 25 425 241 HOH HOH . 
P 4 HOH A 26 426 247 HOH HOH . 
P 4 HOH A 27 427 272 HOH HOH . 
P 4 HOH A 28 428 277 HOH HOH . 
P 4 HOH A 29 429 278 HOH HOH . 
P 4 HOH A 30 430 279 HOH HOH . 
P 4 HOH A 31 431 282 HOH HOH . 
P 4 HOH A 32 432 283 HOH HOH . 
Q 4 HOH B 1 401 10 HOH HOH . 
Q 4 HOH B 2 402 16 HOH HOH . 
Q 4 HOH B 3 403 38 HOH HOH . 
Q 4 HOH B 4 404 40 HOH HOH . 
Q 4 HOH B 5 405 47 HOH HOH . 
Q 4 HOH B 6 406 48 HOH HOH . 
Q 4 HOH B 7 407 51 HOH HOH . 
Q 4 HOH B 8 408 62 HOH HOH . 
Q 4 HOH B 9 409 74 HOH HOH . 
Q 4 HOH B 10 410 75 HOH HOH . 
Q 4 HOH B 11 411 76 HOH HOH . 
Q 4 HOH B 12 412 79 HOH HOH . 
Q 4 HOH B 13 413 90 HOH HOH . 
Q 4 HOH B 14 414 100 HOH HOH . 
Q 4 HOH B 15 415 101 HOH HOH . 
Q 4 HOH B 16 416 104 HOH HOH . 
Q 4 HOH B 17 417 105 HOH HOH . 
Q 4 HOH B 18 418 119 HOH HOH . 
Q 4 HOH B 19 419 129 HOH HOH . 
Q 4 HOH B 20 420 140 HOH HOH . 
Q 4 HOH B 21 421 141 HOH HOH . 
Q 4 HOH B 22 422 149 HOH HOH . 
Q 4 HOH B 23 423 160 HOH HOH . 
Q 4 HOH B 24 424 161 HOH HOH . 
Q 4 HOH B 25 425 164 HOH HOH . 
Q 4 HOH B 26 426 165 HOH HOH . 
Q 4 HOH B 27 427 197 HOH HOH . 
Q 4 HOH B 28 428 217 HOH HOH . 
Q 4 HOH B 29 429 225 HOH HOH . 
Q 4 HOH B 30 430 243 HOH HOH . 
Q 4 HOH B 31 431 270 HOH HOH . 
Q 4 HOH B 32 432 271 HOH HOH . 
Q 4 HOH B 33 433 273 HOH HOH . 
Q 4 HOH B 34 434 275 HOH HOH . 
Q 4 HOH B 35 435 276 HOH HOH . 
Q 4 HOH B 36 436 285 HOH HOH . 
Q 4 HOH B 37 437 287 HOH HOH . 
R 4 HOH C 1 401 7 HOH HOH . 
R 4 HOH C 2 402 14 HOH HOH . 
R 4 HOH C 3 403 18 HOH HOH . 
R 4 HOH C 4 404 23 HOH HOH . 
R 4 HOH C 5 405 24 HOH HOH . 
R 4 HOH C 6 406 27 HOH HOH . 
R 4 HOH C 7 407 34 HOH HOH . 
R 4 HOH C 8 408 35 HOH HOH . 
R 4 HOH C 9 409 39 HOH HOH . 
R 4 HOH C 10 410 57 HOH HOH . 
R 4 HOH C 11 411 60 HOH HOH . 
R 4 HOH C 12 412 64 HOH HOH . 
R 4 HOH C 13 413 71 HOH HOH . 
R 4 HOH C 14 414 72 HOH HOH . 
R 4 HOH C 15 415 80 HOH HOH . 
R 4 HOH C 16 416 84 HOH HOH . 
R 4 HOH C 17 417 88 HOH HOH . 
R 4 HOH C 18 418 95 HOH HOH . 
R 4 HOH C 19 419 98 HOH HOH . 
R 4 HOH C 20 420 126 HOH HOH . 
R 4 HOH C 21 421 153 HOH HOH . 
R 4 HOH C 22 422 166 HOH HOH . 
R 4 HOH C 23 423 178 HOH HOH . 
R 4 HOH C 24 424 180 HOH HOH . 
R 4 HOH C 25 425 223 HOH HOH . 
R 4 HOH C 26 426 245 HOH HOH . 
R 4 HOH C 27 427 258 HOH HOH . 
R 4 HOH C 28 428 267 HOH HOH . 
R 4 HOH C 29 429 274 HOH HOH . 
R 4 HOH C 30 430 280 HOH HOH . 
R 4 HOH C 31 431 281 HOH HOH . 
R 4 HOH C 32 432 286 HOH HOH . 
R 4 HOH C 33 433 293 HOH HOH . 
S 4 HOH D 1 401 13 HOH HOH . 
S 4 HOH D 2 402 28 HOH HOH . 
S 4 HOH D 3 403 56 HOH HOH . 
S 4 HOH D 4 404 69 HOH HOH . 
S 4 HOH D 5 405 73 HOH HOH . 
S 4 HOH D 6 406 83 HOH HOH . 
S 4 HOH D 7 407 94 HOH HOH . 
S 4 HOH D 8 408 99 HOH HOH . 
S 4 HOH D 9 409 118 HOH HOH . 
S 4 HOH D 10 410 120 HOH HOH . 
S 4 HOH D 11 411 123 HOH HOH . 
S 4 HOH D 12 412 134 HOH HOH . 
S 4 HOH D 13 413 137 HOH HOH . 
S 4 HOH D 14 414 172 HOH HOH . 
S 4 HOH D 15 415 181 HOH HOH . 
S 4 HOH D 16 416 204 HOH HOH . 
S 4 HOH D 17 417 288 HOH HOH . 
S 4 HOH D 18 418 289 HOH HOH . 
S 4 HOH D 19 419 290 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 CEF . . . K 3 18.413 -33.645 17.847 0.7 35.58 ? S1 CEF 301 C 1 
HETATM 2 C C1 CEF . . . K 3 19.441 -32.265 18.032 0.7 48.65 ? C1 CEF 301 C 1 
HETATM 3 C C2 CEF . . . K 3 19.483 -31.249 17.088 0.7 45.59 ? C2 CEF 301 C 1 
HETATM 4 C C3 CEF . . . K 3 20.334 -30.174 17.314 0.7 45.67 ? C3 CEF 301 C 1 
HETATM 5 C C4 CEF . . . K 3 18.72 -31.252 15.923 0.7 40.83 ? C4 CEF 301 C 1 
HETATM 6 C C5 CEF . . . K 3 18.877 -30.061 14.979 0.7 38.39 ? C5 CEF 301 C 1 
HETATM 7 O O1 CEF . . . K 3 18.195 -30.055 13.935 0.7 38.42 ? O1 CEF 301 C 1 
HETATM 8 O O2 CEF . . . K 3 19.677 -29.16 15.303 0.7 41.54 ? O2 CEF 301 C 1 
HETATM 9 N N1 CEF . . . K 3 17.848 -32.21 15.562 0.7 36.38 ? N1 CEF 301 C 1 
HETATM 10 C C6 CEF . . . K 3 17.518 -33.459 16.27 0.7 36.93 ? C6 CEF 301 C 1 
HETATM 11 C C7 CEF . . . K 3 17.882 -34.619 15.351 0.7 39.25 ? C7 CEF 301 C 1 
HETATM 12 C C8 CEF . . . K 3 17.502 -34.246 13.92 0.7 36.19 ? C8 CEF 301 C 1 
HETATM 13 O O3 CEF . . . K 3 18.356 -33.931 13.094 0.7 31.66 ? O3 CEF 301 C 1 
HETATM 14 N N2 CEF . . . K 3 19.328 -34.834 15.466 0.7 46.67 ? N2 CEF 301 C 1 
HETATM 15 C C9 CEF . . . K 3 19.902 -36.02 15.308 0.7 50.49 ? C9 CEF 301 C 1 
HETATM 16 O O4 CEF . . . K 3 19.295 -37.051 15.026 0.7 51.99 ? O4 CEF 301 C 1 
HETATM 17 C C10 CEF . . . K 3 21.418 -36.011 15.496 0.7 53.67 ? C10 CEF 301 C 1 
HETATM 18 N N3 CEF . . . K 3 22.036 -34.875 15.802 0.7 52.69 ? N3 CEF 301 C 1 
HETATM 19 O O5 CEF . . . K 3 23.384 -34.855 15.971 0.7 50.28 ? O5 CEF 301 C 1 
HETATM 20 C C11 CEF . . . K 3 23.728 -33.845 16.922 0.7 47.45 ? C11 CEF 301 C 1 
HETATM 21 C C12 CEF . . . K 3 22.157 -37.177 15.349 0.7 57.51 ? C12 CEF 301 C 1 
HETATM 22 C C13 CEF . . . K 3 21.528 -38.54 14.996 0.7 57.89 ? C13 CEF 301 C 1 
HETATM 23 S S2 CEF . . . K 3 22.977 -39.625 14.954 0.7 154.98 ? S2 CEF 301 C 1 
HETATM 24 C C14 CEF . . . K 3 24.102 -38.391 15.341 0.7 69.93 ? C14 CEF 301 C 1 
HETATM 25 N N4 CEF . . . K 3 25.413 -38.581 15.462 0.7 72.7 ? N4 CEF 301 C 1 
HETATM 26 N N5 CEF . . . K 3 23.497 -37.209 15.506 0.7 63.65 ? N5 CEF 301 C 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           577 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#