data_4EC3 # _model_server_result.job_id 9gfx_TKVsXMbMMWlZ7j4wA _model_server_result.datetime_utc '2024-10-17 07:33:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ec3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":609}' # _entry.id 4EC3 # _exptl.entry_id 4EC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.31 _cell.angle_gamma 90 _cell.entry_id 4EC3 _cell.length_a 98.763 _cell.length_b 92.943 _cell.length_c 63.579 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG M 1 NAG 2 n B NAG 2 B 2 NAG M 2 NAG 2 n B BMA 3 B 3 BMA M 3 MAN 2 n B MAN 4 B 4 MAN M 4 MAN 2 n B MAN 5 B 5 MAN M 5 MAN 2 n B MAN 6 B 6 MAN M 6 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 30 1_555 A SG CYS 70 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 19 A ASN 38 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND1 HIS 85 A HIS 104 1_555 C C8M FAD . A FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale3 A SG CYS 147 A CYS 166 1_555 C C6 FAD . A FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? covale ? covale4 A ND2 ASN 452 A ASN 471 1_555 E C1 NAG . A NAG 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 B O2 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 B O2 MAN . B MAN 5 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 376 n n C1 O1 NAG sing 377 n n C1 O5 NAG sing 378 n n C1 H1 NAG sing 379 n n C2 C3 NAG sing 380 n n C2 N2 NAG sing 381 n n C2 H2 NAG sing 382 n n C3 C4 NAG sing 383 n n C3 O3 NAG sing 384 n n C3 H3 NAG sing 385 n n C4 C5 NAG sing 386 n n C4 O4 NAG sing 387 n n C4 H4 NAG sing 388 n n C5 C6 NAG sing 389 n n C5 O5 NAG sing 390 n n C5 H5 NAG sing 391 n n C6 O6 NAG sing 392 n n C6 H61 NAG sing 393 n n C6 H62 NAG sing 394 n n C7 C8 NAG sing 395 n n C7 N2 NAG sing 396 n n C7 O7 NAG doub 397 n n C8 H81 NAG sing 398 n n C8 H82 NAG sing 399 n n C8 H83 NAG sing 400 n n N2 HN2 NAG sing 401 n n O1 HO1 NAG sing 402 n n O3 HO3 NAG sing 403 n n O4 HO4 NAG sing 404 n n O6 HO6 NAG sing 405 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4EC3 _atom_sites.fract_transf_matrix[1][1] 0.010125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001841 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 601 1 FAD FAD . D 4 REN A 1 602 1 REN REN . E 5 NAG A 1 609 1 NAG NAG . F 6 CL A 1 610 1 CL CL . G 7 HOH A 1 701 2 HOH HOH . G 7 HOH A 2 702 3 HOH HOH . G 7 HOH A 3 703 4 HOH HOH . G 7 HOH A 4 704 5 HOH HOH . G 7 HOH A 5 705 6 HOH HOH . G 7 HOH A 6 706 7 HOH HOH . G 7 HOH A 7 707 8 HOH HOH . G 7 HOH A 8 708 9 HOH HOH . G 7 HOH A 9 709 10 HOH HOH . G 7 HOH A 10 710 11 HOH HOH . G 7 HOH A 11 711 13 HOH HOH . G 7 HOH A 12 712 14 HOH HOH . G 7 HOH A 13 713 16 HOH HOH . G 7 HOH A 14 714 18 HOH HOH . G 7 HOH A 15 715 19 HOH HOH . G 7 HOH A 16 716 20 HOH HOH . G 7 HOH A 17 717 21 HOH HOH . G 7 HOH A 18 718 22 HOH HOH . G 7 HOH A 19 719 23 HOH HOH . G 7 HOH A 20 720 25 HOH HOH . G 7 HOH A 21 721 26 HOH HOH . G 7 HOH A 22 722 27 HOH HOH . G 7 HOH A 23 723 28 HOH HOH . G 7 HOH A 24 724 29 HOH HOH . G 7 HOH A 25 725 31 HOH HOH . G 7 HOH A 26 726 33 HOH HOH . G 7 HOH A 27 727 34 HOH HOH . G 7 HOH A 28 728 36 HOH HOH . G 7 HOH A 29 729 37 HOH HOH . G 7 HOH A 30 730 38 HOH HOH . G 7 HOH A 31 731 39 HOH HOH . G 7 HOH A 32 732 41 HOH HOH . G 7 HOH A 33 733 45 HOH HOH . G 7 HOH A 34 734 46 HOH HOH . G 7 HOH A 35 735 47 HOH HOH . G 7 HOH A 36 736 48 HOH HOH . G 7 HOH A 37 737 50 HOH HOH . G 7 HOH A 38 738 52 HOH HOH . G 7 HOH A 39 739 53 HOH HOH . G 7 HOH A 40 740 54 HOH HOH . G 7 HOH A 41 741 55 HOH HOH . G 7 HOH A 42 742 56 HOH HOH . G 7 HOH A 43 743 58 HOH HOH . G 7 HOH A 44 744 59 HOH HOH . G 7 HOH A 45 745 60 HOH HOH . G 7 HOH A 46 746 61 HOH HOH . G 7 HOH A 47 747 63 HOH HOH . G 7 HOH A 48 748 64 HOH HOH . G 7 HOH A 49 749 65 HOH HOH . G 7 HOH A 50 750 66 HOH HOH . G 7 HOH A 51 751 73 HOH HOH . G 7 HOH A 52 752 74 HOH HOH . G 7 HOH A 53 753 75 HOH HOH . G 7 HOH A 54 754 78 HOH HOH . G 7 HOH A 55 755 79 HOH HOH . G 7 HOH A 56 756 80 HOH HOH . G 7 HOH A 57 757 81 HOH HOH . G 7 HOH A 58 758 84 HOH HOH . G 7 HOH A 59 759 87 HOH HOH . G 7 HOH A 60 760 90 HOH HOH . G 7 HOH A 61 761 91 HOH HOH . G 7 HOH A 62 762 93 HOH HOH . G 7 HOH A 63 763 94 HOH HOH . G 7 HOH A 64 764 96 HOH HOH . G 7 HOH A 65 765 97 HOH HOH . G 7 HOH A 66 766 98 HOH HOH . G 7 HOH A 67 767 102 HOH HOH . G 7 HOH A 68 768 103 HOH HOH . G 7 HOH A 69 769 106 HOH HOH . G 7 HOH A 70 770 108 HOH HOH . G 7 HOH A 71 771 110 HOH HOH . G 7 HOH A 72 772 111 HOH HOH . G 7 HOH A 73 773 112 HOH HOH . G 7 HOH A 74 774 113 HOH HOH . G 7 HOH A 75 775 114 HOH HOH . G 7 HOH A 76 776 115 HOH HOH . G 7 HOH A 77 777 116 HOH HOH . G 7 HOH A 78 778 117 HOH HOH . G 7 HOH A 79 779 118 HOH HOH . G 7 HOH A 80 780 119 HOH HOH . G 7 HOH A 81 781 120 HOH HOH . G 7 HOH A 82 782 121 HOH HOH . G 7 HOH A 83 783 122 HOH HOH . G 7 HOH A 84 784 123 HOH HOH . G 7 HOH A 85 785 124 HOH HOH . G 7 HOH A 86 786 125 HOH HOH . G 7 HOH A 87 787 127 HOH HOH . G 7 HOH A 88 788 128 HOH HOH . G 7 HOH A 89 789 129 HOH HOH . G 7 HOH A 90 790 130 HOH HOH . G 7 HOH A 91 791 131 HOH HOH . G 7 HOH A 92 792 132 HOH HOH . G 7 HOH A 93 793 133 HOH HOH . G 7 HOH A 94 794 134 HOH HOH . G 7 HOH A 95 795 135 HOH HOH . G 7 HOH A 96 796 136 HOH HOH . G 7 HOH A 97 797 137 HOH HOH . G 7 HOH A 98 798 138 HOH HOH . G 7 HOH A 99 799 139 HOH HOH . G 7 HOH A 100 800 140 HOH HOH . G 7 HOH A 101 801 141 HOH HOH . G 7 HOH A 102 802 142 HOH HOH . G 7 HOH A 103 803 143 HOH HOH . G 7 HOH A 104 804 144 HOH HOH . G 7 HOH A 105 805 145 HOH HOH . G 7 HOH A 106 806 146 HOH HOH . G 7 HOH A 107 807 147 HOH HOH . G 7 HOH A 108 808 148 HOH HOH . G 7 HOH A 109 809 149 HOH HOH . G 7 HOH A 110 810 150 HOH HOH . G 7 HOH A 111 811 151 HOH HOH . G 7 HOH A 112 812 152 HOH HOH . G 7 HOH A 113 813 153 HOH HOH . G 7 HOH A 114 814 154 HOH HOH . G 7 HOH A 115 815 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 7.891 34.241 -7.565 1 53.89 ? C1 NAG 609 A 1 HETATM 2 C C2 NAG . . . E 5 8.248 33.111 -8.525 1 59.11 ? C2 NAG 609 A 1 HETATM 3 C C3 NAG . . . E 5 7.095 32.123 -8.672 1 61.86 ? C3 NAG 609 A 1 HETATM 4 C C4 NAG . . . E 5 6.538 31.705 -7.316 1 67.31 ? C4 NAG 609 A 1 HETATM 5 C C5 NAG . . . E 5 6.293 32.916 -6.42 1 64.83 ? C5 NAG 609 A 1 HETATM 6 C C6 NAG . . . E 5 5.888 32.475 -5.018 1 68.35 ? C6 NAG 609 A 1 HETATM 7 C C7 NAG . . . E 5 9.856 33.705 -10.246 1 67.41 ? C7 NAG 609 A 1 HETATM 8 C C8 NAG . . . E 5 10.122 34.566 -11.449 1 48.29 ? C8 NAG 609 A 1 HETATM 9 N N2 NAG . . . E 5 8.595 33.663 -9.821 1 61 ? N2 NAG 609 A 1 HETATM 10 O O3 NAG . . . E 5 7.546 30.981 -9.365 1 56.32 ? O3 NAG 609 A 1 HETATM 11 O O4 NAG . . . E 5 5.327 30.998 -7.494 1 57.58 ? O4 NAG 609 A 1 HETATM 12 O O5 NAG . . . E 5 7.456 33.714 -6.33 1 60.81 ? O5 NAG 609 A 1 HETATM 13 O O6 NAG . . . E 5 6.936 31.726 -4.442 1 64.57 ? O6 NAG 609 A 1 HETATM 14 O O7 NAG . . . E 5 10.767 33.085 -9.694 1 63.28 ? O7 NAG 609 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #