data_4ECK # _model_server_result.job_id 5bMoaoBzo8C6w4BG8zI4ug _model_server_result.datetime_utc '2024-11-23 07:21:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 4ECK # _exptl.entry_id 4ECK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 4ECK _cell.length_a 185.944 _cell.length_b 143.015 _cell.length_c 59.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ECK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CB3 sing 70 n y N1 C8A CB3 sing 71 n y N1 HN1 CB3 sing 72 n n C2 NA2 CB3 sing 73 n n C2 N3 CB3 doub 74 n y NA2 HN21 CB3 sing 75 n n NA2 HN22 CB3 sing 76 n n N3 C4 CB3 sing 77 n y C4 O4 CB3 doub 78 n n C4 C4A CB3 sing 79 n y C4A C5 CB3 doub 80 n y C4A C8A CB3 sing 81 n y C5 C6 CB3 sing 82 n y C5 H5 CB3 sing 83 n n C6 C7 CB3 doub 84 n y C6 C9 CB3 sing 85 n n C7 C8 CB3 sing 86 n y C7 H7 CB3 sing 87 n n C8 C8A CB3 doub 88 n y C8 H8 CB3 sing 89 n n C9 N10 CB3 sing 90 n n C9 H91 CB3 sing 91 n n C9 H92 CB3 sing 92 n n N10 C14 CB3 sing 93 n n N10 CP1 CB3 sing 94 n n C11 C12 CB3 doub 95 n y C11 C16 CB3 sing 96 n y C11 C CB3 sing 97 n n C12 C13 CB3 sing 98 n y C12 H12 CB3 sing 99 n n C13 C14 CB3 doub 100 n y C13 H13 CB3 sing 101 n n C14 C15 CB3 sing 102 n y C15 C16 CB3 doub 103 n y C15 H15 CB3 sing 104 n n C16 H16 CB3 sing 105 n n C O CB3 doub 106 n n C N CB3 sing 107 n n N CA CB3 sing 108 n n N HN CB3 sing 109 n n CA CB CB3 sing 110 n n CA CT CB3 sing 111 n n CA HA CB3 sing 112 n n CB CG CB3 sing 113 n n CB HB1 CB3 sing 114 n n CB HB2 CB3 sing 115 n n CG CD CB3 sing 116 n n CG HG1 CB3 sing 117 n n CG HG2 CB3 sing 118 n n CD OE1 CB3 doub 119 n n CD OE2 CB3 sing 120 n n OE2 HOE2 CB3 sing 121 n n CT O1 CB3 doub 122 n n CT O2 CB3 sing 123 n n O2 HO2 CB3 sing 124 n n CP1 CP2 CB3 sing 125 n n CP1 HP11 CB3 sing 126 n n CP1 HP12 CB3 sing 127 n n CP2 CP3 CB3 trip 128 n n CP3 HP3 CB3 sing 129 n n # _atom_sites.entry_id 4ECK _atom_sites.fract_transf_matrix[1][1] 0.005378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 703 UMP UMP . D 3 CB3 A 1 702 704 CB3 CB3 . E 4 FOL A 1 703 705 FOL FOL . F 5 NDP A 1 704 706 NDP NDP . G 2 UMP B 1 701 703 UMP UMP . H 3 CB3 B 1 702 704 CB3 CB3 . I 4 FOL B 1 703 705 FOL FOL . J 5 NDP B 1 704 706 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . D 3 -38.49 11.585 -17.135 1 95.07 ? N1 CB3 702 A 1 HETATM 2 C C2 CB3 . . . D 3 -39.781 11.308 -16.84 1 96.26 ? C2 CB3 702 A 1 HETATM 3 N NA2 CB3 . . . D 3 -40.051 10.815 -15.6 1 97.26 ? NA2 CB3 702 A 1 HETATM 4 N N3 CB3 . . . D 3 -40.816 11.49 -17.717 1 92.15 ? N3 CB3 702 A 1 HETATM 5 C C4 CB3 . . . D 3 -40.61 11.972 -18.958 1 90.22 ? C4 CB3 702 A 1 HETATM 6 O O4 CB3 . . . D 3 -41.565 12.14 -19.752 1 90.4 ? O4 CB3 702 A 1 HETATM 7 C C4A CB3 . . . D 3 -39.212 12.294 -19.337 1 90.57 ? C4A CB3 702 A 1 HETATM 8 C C5 CB3 . . . D 3 -38.893 12.786 -20.583 1 88.41 ? C5 CB3 702 A 1 HETATM 9 C C6 CB3 . . . D 3 -37.563 13.072 -20.875 1 87.9 ? C6 CB3 702 A 1 HETATM 10 C C7 CB3 . . . D 3 -36.553 12.861 -19.931 1 87.87 ? C7 CB3 702 A 1 HETATM 11 C C8 CB3 . . . D 3 -36.828 12.361 -18.66 1 89.38 ? C8 CB3 702 A 1 HETATM 12 C C8A CB3 . . . D 3 -38.144 12.065 -18.334 1 91.71 ? C8A CB3 702 A 1 HETATM 13 C C9 CB3 . . . D 3 -37.194 13.619 -22.235 1 86.21 ? C9 CB3 702 A 1 HETATM 14 N N10 CB3 . . . D 3 -38.299 14.234 -22.968 1 84.86 ? N10 CB3 702 A 1 HETATM 15 C C11 CB3 . . . D 3 -40.698 17.305 -21.292 1 91.71 ? C11 CB3 702 A 1 HETATM 16 C C12 CB3 . . . D 3 -41.033 16.744 -22.531 1 84.88 ? C12 CB3 702 A 1 HETATM 17 C C13 CB3 . . . D 3 -40.245 15.739 -23.084 1 81.28 ? C13 CB3 702 A 1 HETATM 18 C C14 CB3 . . . D 3 -39.111 15.264 -22.407 1 85.74 ? C14 CB3 702 A 1 HETATM 19 C C15 CB3 . . . D 3 -38.776 15.841 -21.166 1 87.57 ? C15 CB3 702 A 1 HETATM 20 C C16 CB3 . . . D 3 -39.564 16.845 -20.602 1 89.1 ? C16 CB3 702 A 1 HETATM 21 C C CB3 . . . D 3 -41.533 18.406 -20.677 1 96.18 ? C CB3 702 A 1 HETATM 22 O O CB3 . . . D 3 -41.141 18.844 -19.603 1 96.4 ? O CB3 702 A 1 HETATM 23 N N CB3 . . . D 3 -42.647 18.896 -21.276 1 100.83 ? N CB3 702 A 1 HETATM 24 C CA CB3 . . . D 3 -43.437 20.003 -20.699 1 105.68 ? CA CB3 702 A 1 HETATM 25 C CB CB3 . . . D 3 -42.6 21.289 -20.522 1 104.83 ? CB CB3 702 A 1 HETATM 26 C CG CB3 . . . D 3 -41.628 21.513 -21.67 1 98.66 ? CG CB3 702 A 1 HETATM 27 C CD CB3 . . . D 3 -41.475 22.985 -21.945 1 94.05 ? CD CB3 702 A 1 HETATM 28 O OE1 CB3 . . . D 3 -40.334 23.439 -21.803 1 96.61 ? OE1 CB3 702 A 1 HETATM 29 O OE2 CB3 . . . D 3 -42.431 23.694 -22.316 1 85.84 ? OE2 CB3 702 A 1 HETATM 30 C CT CB3 . . . D 3 -44.791 20.287 -21.356 1 105.92 ? CT CB3 702 A 1 HETATM 31 O O1 CB3 . . . D 3 -45.75 19.525 -21.084 1 105.47 ? O1 CB3 702 A 1 HETATM 32 O O2 CB3 . . . D 3 -44.946 21.276 -22.12 1 102.28 ? O2 CB3 702 A 1 HETATM 33 C CP1 CB3 . . . D 3 -38.493 13.745 -24.331 1 82.56 ? CP1 CB3 702 A 1 HETATM 34 C CP2 CB3 . . . D 3 -39.725 12.962 -24.361 1 81.96 ? CP2 CB3 702 A 1 HETATM 35 C CP3 CB3 . . . D 3 -40.799 12.285 -24.382 1 80.02 ? CP3 CB3 702 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #