data_4ECK # _model_server_result.job_id j4U6lhxydR32x_J6O34NuA _model_server_result.datetime_utc '2025-02-17 06:03:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 4ECK # _exptl.entry_id 4ECK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 4ECK _cell.length_a 185.944 _cell.length_b 143.015 _cell.length_c 59.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ECK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 348 n n PA O2A NDP sing 349 n n PA O5B NDP sing 350 n n PA O3 NDP sing 351 n n O2A HOA2 NDP sing 352 n n O5B C5B NDP sing 353 n n C5B C4B NDP sing 354 n n C5B H51A NDP sing 355 n n C5B H52A NDP sing 356 n n C4B O4B NDP sing 357 n n C4B C3B NDP sing 358 n n C4B H4B NDP sing 359 n n O4B C1B NDP sing 360 n n C3B O3B NDP sing 361 n n C3B C2B NDP sing 362 n n C3B H3B NDP sing 363 n n O3B HO3A NDP sing 364 n n C2B O2B NDP sing 365 n n C2B C1B NDP sing 366 n n C2B H2B NDP sing 367 n n O2B P2B NDP sing 368 n n C1B N9A NDP sing 369 n n C1B H1B NDP sing 370 n n N9A C8A NDP sing 371 n y N9A C4A NDP sing 372 n y C8A N7A NDP doub 373 n y C8A H8A NDP sing 374 n n N7A C5A NDP sing 375 n y C5A C6A NDP sing 376 n y C5A C4A NDP doub 377 n y C6A N6A NDP sing 378 n n C6A N1A NDP doub 379 n y N6A H61A NDP sing 380 n n N6A H62A NDP sing 381 n n N1A C2A NDP sing 382 n y C2A N3A NDP doub 383 n y C2A H2A NDP sing 384 n n N3A C4A NDP sing 385 n y O3 PN NDP sing 386 n n PN O1N NDP doub 387 n n PN O2N NDP sing 388 n n PN O5D NDP sing 389 n n O2N H21N NDP sing 390 n n O5D C5D NDP sing 391 n n C5D C4D NDP sing 392 n n C5D H51N NDP sing 393 n n C5D H52N NDP sing 394 n n C4D O4D NDP sing 395 n n C4D C3D NDP sing 396 n n C4D H4D NDP sing 397 n n O4D C1D NDP sing 398 n n C3D O3D NDP sing 399 n n C3D C2D NDP sing 400 n n C3D H3D NDP sing 401 n n O3D HO3N NDP sing 402 n n C2D O2D NDP sing 403 n n C2D C1D NDP sing 404 n n C2D H2D NDP sing 405 n n O2D HO2N NDP sing 406 n n C1D N1N NDP sing 407 n n C1D H1D NDP sing 408 n n N1N C2N NDP sing 409 n n N1N C6N NDP sing 410 n n C2N C3N NDP doub 411 n n C2N H2N NDP sing 412 n n C3N C7N NDP sing 413 n n C3N C4N NDP sing 414 n n C7N O7N NDP doub 415 n n C7N N7N NDP sing 416 n n N7N H71N NDP sing 417 n n N7N H72N NDP sing 418 n n C4N C5N NDP sing 419 n n C4N H41N NDP sing 420 n n C4N H42N NDP sing 421 n n C5N C6N NDP doub 422 n n C5N H5N NDP sing 423 n n C6N H6N NDP sing 424 n n P2B O1X NDP doub 425 n n P2B O2X NDP sing 426 n n P2B O3X NDP sing 427 n n O2X HOP2 NDP sing 428 n n O3X HOP3 NDP sing 429 n n # _atom_sites.entry_id 4ECK _atom_sites.fract_transf_matrix[1][1] 0.005378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 703 UMP UMP . D 3 CB3 A 1 702 704 CB3 CB3 . E 4 FOL A 1 703 705 FOL FOL . F 5 NDP A 1 704 706 NDP NDP . G 2 UMP B 1 701 703 UMP UMP . H 3 CB3 B 1 702 704 CB3 CB3 . I 4 FOL B 1 703 705 FOL FOL . J 5 NDP B 1 704 706 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . F 5 -77.712 34.728 -45.587 1 82.65 ? PA NDP 704 A 1 HETATM 2 O O1A NDP . . . F 5 -78.036 34.456 -44.109 1 79.22 ? O1A NDP 704 A 1 HETATM 3 O O2A NDP . . . F 5 -77.535 33.366 -46.377 1 83.07 ? O2A NDP 704 A 1 HETATM 4 O O5B NDP . . . F 5 -78.858 35.535 -46.271 1 84.24 ? O5B NDP 704 A 1 HETATM 5 C C5B NDP . . . F 5 -79.239 36.803 -45.852 1 88.14 ? C5B NDP 704 A 1 HETATM 6 C C4B NDP . . . F 5 -80.528 37.265 -46.486 1 92.94 ? C4B NDP 704 A 1 HETATM 7 O O4B NDP . . . F 5 -81.529 36.243 -46.385 1 92.78 ? O4B NDP 704 A 1 HETATM 8 C C3B NDP . . . F 5 -81.156 38.478 -45.892 1 96.69 ? C3B NDP 704 A 1 HETATM 9 O O3B NDP . . . F 5 -80.665 39.676 -46.443 1 96.02 ? O3B NDP 704 A 1 HETATM 10 C C2B NDP . . . F 5 -82.558 38.254 -46.116 1 97.29 ? C2B NDP 704 A 1 HETATM 11 O O2B NDP . . . F 5 -82.89 38.3 -47.455 1 97.88 ? O2B NDP 704 A 1 HETATM 12 C C1B NDP . . . F 5 -82.651 36.802 -45.78 1 96.51 ? C1B NDP 704 A 1 HETATM 13 N N9A NDP . . . F 5 -82.693 36.461 -44.341 1 98.59 ? N9A NDP 704 A 1 HETATM 14 C C8A NDP . . . F 5 -81.737 35.821 -43.651 1 98.52 ? C8A NDP 704 A 1 HETATM 15 N N7A NDP . . . F 5 -82.097 35.68 -42.362 1 96.96 ? N7A NDP 704 A 1 HETATM 16 C C5A NDP . . . F 5 -83.309 36.248 -42.229 1 98.71 ? C5A NDP 704 A 1 HETATM 17 C C6A NDP . . . F 5 -84.167 36.402 -41.139 1 97.86 ? C6A NDP 704 A 1 HETATM 18 N N6A NDP . . . F 5 -83.792 35.898 -39.808 1 94.51 ? N6A NDP 704 A 1 HETATM 19 N N1A NDP . . . F 5 -85.344 37.024 -41.316 1 100.32 ? N1A NDP 704 A 1 HETATM 20 C C2A NDP . . . F 5 -85.696 37.501 -42.531 1 103.16 ? C2A NDP 704 A 1 HETATM 21 N N3A NDP . . . F 5 -84.879 37.37 -43.603 1 104.05 ? N3A NDP 704 A 1 HETATM 22 C C4A NDP . . . F 5 -83.684 36.744 -43.471 1 100.28 ? C4A NDP 704 A 1 HETATM 23 O O3 NDP . . . F 5 -76.403 35.616 -45.837 1 80.25 ? O3 NDP 704 A 1 HETATM 24 P PN NDP . . . F 5 -75.133 35.675 -44.877 1 79.09 ? PN NDP 704 A 1 HETATM 25 O O1N NDP . . . F 5 -75.435 35.53 -43.39 1 77.6 ? O1N NDP 704 A 1 HETATM 26 O O2N NDP . . . F 5 -74.389 37.035 -45.073 1 78.18 ? O2N NDP 704 A 1 HETATM 27 O O5D NDP . . . F 5 -74.14 34.529 -45.34 1 76.35 ? O5D NDP 704 A 1 HETATM 28 C C5D NDP . . . F 5 -73.458 34.686 -46.552 1 75.75 ? C5D NDP 704 A 1 HETATM 29 C C4D NDP . . . F 5 -72.03 34.153 -46.537 1 75.67 ? C4D NDP 704 A 1 HETATM 30 O O4D NDP . . . F 5 -71.923 32.985 -45.769 1 76.61 ? O4D NDP 704 A 1 HETATM 31 C C3D NDP . . . F 5 -71.534 33.832 -47.899 1 76.18 ? C3D NDP 704 A 1 HETATM 32 O O3D NDP . . . F 5 -70.197 34.327 -47.983 1 75.31 ? O3D NDP 704 A 1 HETATM 33 C C2D NDP . . . F 5 -71.707 32.406 -48.003 1 77.12 ? C2D NDP 704 A 1 HETATM 34 O O2D NDP . . . F 5 -70.889 31.766 -48.952 1 75.49 ? O2D NDP 704 A 1 HETATM 35 C C1D NDP . . . F 5 -71.371 31.968 -46.618 1 77.4 ? C1D NDP 704 A 1 HETATM 36 N N1N NDP . . . F 5 -71.596 30.556 -46.3 1 78.9 ? N1N NDP 704 A 1 HETATM 37 C C2N NDP . . . F 5 -70.827 29.425 -45.921 1 79.99 ? C2N NDP 704 A 1 HETATM 38 C C3N NDP . . . F 5 -71.446 28.424 -45.019 1 82.98 ? C3N NDP 704 A 1 HETATM 39 C C7N NDP . . . F 5 -70.545 27.369 -44.429 1 81.52 ? C7N NDP 704 A 1 HETATM 40 O O7N NDP . . . F 5 -71.015 26.365 -43.871 1 80.47 ? O7N NDP 704 A 1 HETATM 41 N N7N NDP . . . F 5 -69.121 27.548 -44.52 1 76.11 ? N7N NDP 704 A 1 HETATM 42 C C4N NDP . . . F 5 -72.948 28.332 -44.901 1 84.21 ? C4N NDP 704 A 1 HETATM 43 C C5N NDP . . . F 5 -73.703 29.272 -45.787 1 82.3 ? C5N NDP 704 A 1 HETATM 44 C C6N NDP . . . F 5 -73.016 30.392 -46.456 1 81.96 ? C6N NDP 704 A 1 HETATM 45 P P2B NDP . . . F 5 -83.527 39.575 -48.18 1 100.3 ? P2B NDP 704 A 1 HETATM 46 O O1X NDP . . . F 5 -83.821 39.3 -49.614 1 96.23 ? O1X NDP 704 A 1 HETATM 47 O O2X NDP . . . F 5 -84.787 39.987 -47.458 1 99.91 ? O2X NDP 704 A 1 HETATM 48 O O3X NDP . . . F 5 -82.49 40.674 -48.148 1 100.6 ? O3X NDP 704 A 1 # _model_server_stats.io_time_ms 144 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #