data_4ECK # _model_server_result.job_id cQxjwCTekrw4uIz3brISUg _model_server_result.datetime_utc '2024-11-27 01:04:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":704}' # _entry.id 4ECK # _exptl.entry_id 4ECK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 4ECK _cell.length_a 185.944 _cell.length_b 143.015 _cell.length_c 59.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ECK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 348 n n PA O2A NDP sing 349 n n PA O5B NDP sing 350 n n PA O3 NDP sing 351 n n O2A HOA2 NDP sing 352 n n O5B C5B NDP sing 353 n n C5B C4B NDP sing 354 n n C5B H51A NDP sing 355 n n C5B H52A NDP sing 356 n n C4B O4B NDP sing 357 n n C4B C3B NDP sing 358 n n C4B H4B NDP sing 359 n n O4B C1B NDP sing 360 n n C3B O3B NDP sing 361 n n C3B C2B NDP sing 362 n n C3B H3B NDP sing 363 n n O3B HO3A NDP sing 364 n n C2B O2B NDP sing 365 n n C2B C1B NDP sing 366 n n C2B H2B NDP sing 367 n n O2B P2B NDP sing 368 n n C1B N9A NDP sing 369 n n C1B H1B NDP sing 370 n n N9A C8A NDP sing 371 n y N9A C4A NDP sing 372 n y C8A N7A NDP doub 373 n y C8A H8A NDP sing 374 n n N7A C5A NDP sing 375 n y C5A C6A NDP sing 376 n y C5A C4A NDP doub 377 n y C6A N6A NDP sing 378 n n C6A N1A NDP doub 379 n y N6A H61A NDP sing 380 n n N6A H62A NDP sing 381 n n N1A C2A NDP sing 382 n y C2A N3A NDP doub 383 n y C2A H2A NDP sing 384 n n N3A C4A NDP sing 385 n y O3 PN NDP sing 386 n n PN O1N NDP doub 387 n n PN O2N NDP sing 388 n n PN O5D NDP sing 389 n n O2N H21N NDP sing 390 n n O5D C5D NDP sing 391 n n C5D C4D NDP sing 392 n n C5D H51N NDP sing 393 n n C5D H52N NDP sing 394 n n C4D O4D NDP sing 395 n n C4D C3D NDP sing 396 n n C4D H4D NDP sing 397 n n O4D C1D NDP sing 398 n n C3D O3D NDP sing 399 n n C3D C2D NDP sing 400 n n C3D H3D NDP sing 401 n n O3D HO3N NDP sing 402 n n C2D O2D NDP sing 403 n n C2D C1D NDP sing 404 n n C2D H2D NDP sing 405 n n O2D HO2N NDP sing 406 n n C1D N1N NDP sing 407 n n C1D H1D NDP sing 408 n n N1N C2N NDP sing 409 n n N1N C6N NDP sing 410 n n C2N C3N NDP doub 411 n n C2N H2N NDP sing 412 n n C3N C7N NDP sing 413 n n C3N C4N NDP sing 414 n n C7N O7N NDP doub 415 n n C7N N7N NDP sing 416 n n N7N H71N NDP sing 417 n n N7N H72N NDP sing 418 n n C4N C5N NDP sing 419 n n C4N H41N NDP sing 420 n n C4N H42N NDP sing 421 n n C5N C6N NDP doub 422 n n C5N H5N NDP sing 423 n n C6N H6N NDP sing 424 n n P2B O1X NDP doub 425 n n P2B O2X NDP sing 426 n n P2B O3X NDP sing 427 n n O2X HOP2 NDP sing 428 n n O3X HOP3 NDP sing 429 n n # _atom_sites.entry_id 4ECK _atom_sites.fract_transf_matrix[1][1] 0.005378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 703 UMP UMP . D 3 CB3 A 1 702 704 CB3 CB3 . E 4 FOL A 1 703 705 FOL FOL . F 5 NDP A 1 704 706 NDP NDP . G 2 UMP B 1 701 703 UMP UMP . H 3 CB3 B 1 702 704 CB3 CB3 . I 4 FOL B 1 703 705 FOL FOL . J 5 NDP B 1 704 706 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . J 5 -77.811 -42.471 -14.203 1 80.6 ? PA NDP 704 B 1 HETATM 2 O O1A NDP . . . J 5 -78.195 -42.206 -15.668 1 77.75 ? O1A NDP 704 B 1 HETATM 3 O O2A NDP . . . J 5 -77.559 -41.1 -13.45 1 79.25 ? O2A NDP 704 B 1 HETATM 4 O O5B NDP . . . J 5 -78.942 -43.273 -13.501 1 79.92 ? O5B NDP 704 B 1 HETATM 5 C C5B NDP . . . J 5 -79.325 -44.53 -13.958 1 84.16 ? C5B NDP 704 B 1 HETATM 6 C C4B NDP . . . J 5 -80.639 -45.006 -13.387 1 88.89 ? C4B NDP 704 B 1 HETATM 7 O O4B NDP . . . J 5 -81.612 -43.959 -13.485 1 91.45 ? O4B NDP 704 B 1 HETATM 8 C C3B NDP . . . J 5 -81.281 -46.169 -14.062 1 90.35 ? C3B NDP 704 B 1 HETATM 9 O O3B NDP . . . J 5 -80.802 -47.41 -13.617 1 86.61 ? O3B NDP 704 B 1 HETATM 10 C C2B NDP . . . J 5 -82.673 -45.949 -13.796 1 91.81 ? C2B NDP 704 B 1 HETATM 11 O O2B NDP . . . J 5 -82.96 -46.014 -12.451 1 93.41 ? O2B NDP 704 B 1 HETATM 12 C C1B NDP . . . J 5 -82.751 -44.491 -14.103 1 93.28 ? C1B NDP 704 B 1 HETATM 13 N N9A NDP . . . J 5 -82.788 -44.14 -15.547 1 93.85 ? N9A NDP 704 B 1 HETATM 14 C C8A NDP . . . J 5 -81.84 -43.459 -16.207 1 91.48 ? C8A NDP 704 B 1 HETATM 15 N N7A NDP . . . J 5 -82.191 -43.327 -17.496 1 91.74 ? N7A NDP 704 B 1 HETATM 16 C C5A NDP . . . J 5 -83.379 -43.942 -17.664 1 94.7 ? C5A NDP 704 B 1 HETATM 17 C C6A NDP . . . J 5 -84.213 -44.121 -18.777 1 95.95 ? C6A NDP 704 B 1 HETATM 18 N N6A NDP . . . J 5 -83.841 -43.598 -20.107 1 91.82 ? N6A NDP 704 B 1 HETATM 19 N N1A NDP . . . J 5 -85.372 -44.793 -18.624 1 98.32 ? N1A NDP 704 B 1 HETATM 20 C C2A NDP . . . J 5 -85.721 -45.286 -17.414 1 99.72 ? C2A NDP 704 B 1 HETATM 21 N N3A NDP . . . J 5 -84.928 -45.128 -16.328 1 99.23 ? N3A NDP 704 B 1 HETATM 22 C C4A NDP . . . J 5 -83.754 -44.458 -16.433 1 95.13 ? C4A NDP 704 B 1 HETATM 23 O O3 NDP . . . J 5 -76.523 -43.395 -13.981 1 82.77 ? O3 NDP 704 B 1 HETATM 24 P PN NDP . . . J 5 -75.219 -43.425 -14.911 1 86.7 ? PN NDP 704 B 1 HETATM 25 O O1N NDP . . . J 5 -75.448 -43.345 -16.412 1 81.23 ? O1N NDP 704 B 1 HETATM 26 O O2N NDP . . . J 5 -74.39 -44.724 -14.658 1 88.67 ? O2N NDP 704 B 1 HETATM 27 O O5D NDP . . . J 5 -74.325 -42.21 -14.432 1 84.68 ? O5D NDP 704 B 1 HETATM 28 C C5D NDP . . . J 5 -73.609 -42.34 -13.227 1 81.79 ? C5D NDP 704 B 1 HETATM 29 C C4D NDP . . . J 5 -72.159 -41.875 -13.324 1 80.17 ? C4D NDP 704 B 1 HETATM 30 O O4D NDP . . . J 5 -72.002 -40.71 -14.102 1 80.14 ? O4D NDP 704 B 1 HETATM 31 C C3D NDP . . . J 5 -71.59 -41.585 -11.98 1 79.32 ? C3D NDP 704 B 1 HETATM 32 O O3D NDP . . . J 5 -70.236 -42.046 -11.982 1 78.11 ? O3D NDP 704 B 1 HETATM 33 C C2D NDP . . . J 5 -71.753 -40.156 -11.859 1 79.77 ? C2D NDP 704 B 1 HETATM 34 O O2D NDP . . . J 5 -70.901 -39.523 -10.927 1 77.72 ? O2D NDP 704 B 1 HETATM 35 C C1D NDP . . . J 5 -71.459 -39.691 -13.246 1 80.71 ? C1D NDP 704 B 1 HETATM 36 N N1N NDP . . . J 5 -71.719 -38.271 -13.523 1 81.59 ? N1N NDP 704 B 1 HETATM 37 C C2N NDP . . . J 5 -70.957 -37.116 -13.848 1 81.24 ? C2N NDP 704 B 1 HETATM 38 C C3N NDP . . . J 5 -71.534 -36.122 -14.783 1 81.21 ? C3N NDP 704 B 1 HETATM 39 C C7N NDP . . . J 5 -70.597 -35.097 -15.372 1 78.23 ? C7N NDP 704 B 1 HETATM 40 O O7N NDP . . . J 5 -71 -34.058 -15.899 1 75.97 ? O7N NDP 704 B 1 HETATM 41 N N7N NDP . . . J 5 -69.185 -35.34 -15.316 1 75.11 ? N7N NDP 704 B 1 HETATM 42 C C4N NDP . . . J 5 -73.027 -36.045 -14.944 1 82.79 ? C4N NDP 704 B 1 HETATM 43 C C5N NDP . . . J 5 -73.777 -36.913 -13.971 1 81.75 ? C5N NDP 704 B 1 HETATM 44 C C6N NDP . . . J 5 -73.146 -38.119 -13.398 1 81.39 ? C6N NDP 704 B 1 HETATM 45 P P2B NDP . . . J 5 -83.623 -47.287 -11.754 1 101.06 ? P2B NDP 704 B 1 HETATM 46 O O1X NDP . . . J 5 -83.774 -47.009 -10.298 1 98.22 ? O1X NDP 704 B 1 HETATM 47 O O2X NDP . . . J 5 -84.965 -47.597 -12.388 1 98.92 ? O2X NDP 704 B 1 HETATM 48 O O3X NDP . . . J 5 -82.684 -48.469 -11.875 1 102.1 ? O3X NDP 704 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #