data_4ECM # _model_server_result.job_id vx7GPuDd5h-zs09Apmze8g _model_server_result.datetime_utc '2024-11-24 15:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ecm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4ECM # _exptl.entry_id 4ECM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ECM _cell.length_a 135.072 _cell.length_b 135.072 _cell.length_c 85.138 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ECM _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 135.072 0 0 3 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 85.138 4 'crystal symmetry operation' 11_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 135.072 0 85.138 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 324 n n P1 O2 POP sing 325 n n P1 O3 POP sing 326 n n P1 O POP sing 327 n n O2 HO2 POP sing 328 n n O P2 POP sing 329 n n P2 O4 POP doub 330 n n P2 O5 POP sing 331 n n P2 O6 POP sing 332 n n O5 HO5 POP sing 333 n n # _atom_sites.entry_id 4ECM _atom_sites.fract_transf_matrix[1][1] 0.007403 _atom_sites.fract_transf_matrix[1][2] 0.004274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DAU A 1 301 1 DAU DAU . C 3 POP A 1 302 2 POP POP . D 4 HOH A 1 401 3 HOH HOH . D 4 HOH A 2 402 4 HOH HOH . D 4 HOH A 3 403 5 HOH HOH . D 4 HOH A 4 404 6 HOH HOH . D 4 HOH A 5 405 7 HOH HOH . D 4 HOH A 6 406 8 HOH HOH . D 4 HOH A 7 407 9 HOH HOH . D 4 HOH A 8 408 10 HOH HOH . D 4 HOH A 9 409 11 HOH HOH . D 4 HOH A 10 410 12 HOH HOH . D 4 HOH A 11 411 13 HOH HOH . D 4 HOH A 12 412 14 HOH HOH . D 4 HOH A 13 413 15 HOH HOH . D 4 HOH A 14 414 16 HOH HOH . D 4 HOH A 15 415 17 HOH HOH . D 4 HOH A 16 416 18 HOH HOH . D 4 HOH A 17 417 19 HOH HOH . D 4 HOH A 18 418 20 HOH HOH . D 4 HOH A 19 419 21 HOH HOH . D 4 HOH A 20 420 22 HOH HOH . D 4 HOH A 21 421 23 HOH HOH . D 4 HOH A 22 422 24 HOH HOH . D 4 HOH A 23 423 25 HOH HOH . D 4 HOH A 24 424 26 HOH HOH . D 4 HOH A 25 425 27 HOH HOH . D 4 HOH A 26 426 28 HOH HOH . D 4 HOH A 27 427 29 HOH HOH . D 4 HOH A 28 428 30 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 32 HOH HOH . D 4 HOH A 31 431 33 HOH HOH . D 4 HOH A 32 432 34 HOH HOH . D 4 HOH A 33 433 35 HOH HOH . D 4 HOH A 34 434 36 HOH HOH . D 4 HOH A 35 435 37 HOH HOH . D 4 HOH A 36 436 38 HOH HOH . D 4 HOH A 37 437 39 HOH HOH . D 4 HOH A 38 438 40 HOH HOH . D 4 HOH A 39 439 41 HOH HOH . D 4 HOH A 40 440 42 HOH HOH . D 4 HOH A 41 441 43 HOH HOH . D 4 HOH A 42 442 44 HOH HOH . D 4 HOH A 43 443 45 HOH HOH . D 4 HOH A 44 444 46 HOH HOH . D 4 HOH A 45 445 47 HOH HOH . D 4 HOH A 46 446 48 HOH HOH . D 4 HOH A 47 447 49 HOH HOH . D 4 HOH A 48 448 50 HOH HOH . D 4 HOH A 49 449 51 HOH HOH . D 4 HOH A 50 450 52 HOH HOH . D 4 HOH A 51 451 53 HOH HOH . D 4 HOH A 52 452 54 HOH HOH . D 4 HOH A 53 453 55 HOH HOH . D 4 HOH A 54 454 56 HOH HOH . D 4 HOH A 55 455 57 HOH HOH . D 4 HOH A 56 456 58 HOH HOH . D 4 HOH A 57 457 59 HOH HOH . D 4 HOH A 58 458 60 HOH HOH . D 4 HOH A 59 459 61 HOH HOH . D 4 HOH A 60 460 62 HOH HOH . D 4 HOH A 61 461 63 HOH HOH . D 4 HOH A 62 462 64 HOH HOH . D 4 HOH A 63 463 65 HOH HOH . D 4 HOH A 64 464 66 HOH HOH . D 4 HOH A 65 465 67 HOH HOH . D 4 HOH A 66 466 68 HOH HOH . D 4 HOH A 67 467 69 HOH HOH . D 4 HOH A 68 468 70 HOH HOH . D 4 HOH A 69 469 71 HOH HOH . D 4 HOH A 70 470 72 HOH HOH . D 4 HOH A 71 471 73 HOH HOH . D 4 HOH A 72 472 74 HOH HOH . D 4 HOH A 73 473 75 HOH HOH . D 4 HOH A 74 474 76 HOH HOH . D 4 HOH A 75 475 77 HOH HOH . D 4 HOH A 76 476 78 HOH HOH . D 4 HOH A 77 477 79 HOH HOH . D 4 HOH A 78 478 80 HOH HOH . D 4 HOH A 79 479 81 HOH HOH . D 4 HOH A 80 480 82 HOH HOH . D 4 HOH A 81 481 83 HOH HOH . D 4 HOH A 82 482 84 HOH HOH . D 4 HOH A 83 483 85 HOH HOH . D 4 HOH A 84 484 86 HOH HOH . D 4 HOH A 85 485 87 HOH HOH . D 4 HOH A 86 486 88 HOH HOH . D 4 HOH A 87 487 89 HOH HOH . D 4 HOH A 88 488 90 HOH HOH . D 4 HOH A 89 489 91 HOH HOH . D 4 HOH A 90 490 92 HOH HOH . D 4 HOH A 91 491 93 HOH HOH . D 4 HOH A 92 492 94 HOH HOH . D 4 HOH A 93 493 95 HOH HOH . D 4 HOH A 94 494 96 HOH HOH . D 4 HOH A 95 495 97 HOH HOH . D 4 HOH A 96 496 98 HOH HOH . D 4 HOH A 97 497 99 HOH HOH . D 4 HOH A 98 498 100 HOH HOH . D 4 HOH A 99 499 101 HOH HOH . D 4 HOH A 100 500 102 HOH HOH . D 4 HOH A 101 501 103 HOH HOH . D 4 HOH A 102 502 104 HOH HOH . D 4 HOH A 103 503 105 HOH HOH . D 4 HOH A 104 504 106 HOH HOH . D 4 HOH A 105 505 107 HOH HOH . D 4 HOH A 106 506 108 HOH HOH . D 4 HOH A 107 507 109 HOH HOH . D 4 HOH A 108 508 110 HOH HOH . D 4 HOH A 109 509 111 HOH HOH . D 4 HOH A 110 510 112 HOH HOH . D 4 HOH A 111 511 113 HOH HOH . D 4 HOH A 112 512 114 HOH HOH . D 4 HOH A 113 513 115 HOH HOH . D 4 HOH A 114 514 116 HOH HOH . D 4 HOH A 115 515 117 HOH HOH . D 4 HOH A 116 516 118 HOH HOH . D 4 HOH A 117 517 119 HOH HOH . D 4 HOH A 118 518 120 HOH HOH . D 4 HOH A 119 519 121 HOH HOH . D 4 HOH A 120 520 122 HOH HOH . D 4 HOH A 121 521 123 HOH HOH . D 4 HOH A 122 522 124 HOH HOH . D 4 HOH A 123 523 125 HOH HOH . D 4 HOH A 124 524 126 HOH HOH . D 4 HOH A 125 525 127 HOH HOH . D 4 HOH A 126 526 128 HOH HOH . D 4 HOH A 127 527 129 HOH HOH . D 4 HOH A 128 528 130 HOH HOH . D 4 HOH A 129 529 131 HOH HOH . D 4 HOH A 130 530 132 HOH HOH . D 4 HOH A 131 531 133 HOH HOH . D 4 HOH A 132 532 134 HOH HOH . D 4 HOH A 133 533 135 HOH HOH . D 4 HOH A 134 534 136 HOH HOH . D 4 HOH A 135 535 137 HOH HOH . D 4 HOH A 136 536 138 HOH HOH . D 4 HOH A 137 537 139 HOH HOH . D 4 HOH A 138 538 140 HOH HOH . D 4 HOH A 139 539 141 HOH HOH . D 4 HOH A 140 540 142 HOH HOH . D 4 HOH A 141 541 143 HOH HOH . D 4 HOH A 142 542 144 HOH HOH . D 4 HOH A 143 543 145 HOH HOH . D 4 HOH A 144 544 146 HOH HOH . D 4 HOH A 145 545 147 HOH HOH . D 4 HOH A 146 546 148 HOH HOH . D 4 HOH A 147 547 149 HOH HOH . D 4 HOH A 148 548 150 HOH HOH . D 4 HOH A 149 549 151 HOH HOH . D 4 HOH A 150 550 152 HOH HOH . D 4 HOH A 151 551 153 HOH HOH . D 4 HOH A 152 552 154 HOH HOH . D 4 HOH A 153 553 155 HOH HOH . D 4 HOH A 154 554 156 HOH HOH . D 4 HOH A 155 555 157 HOH HOH . D 4 HOH A 156 556 158 HOH HOH . D 4 HOH A 157 557 159 HOH HOH . D 4 HOH A 158 558 160 HOH HOH . D 4 HOH A 159 559 161 HOH HOH . D 4 HOH A 160 560 162 HOH HOH . D 4 HOH A 161 561 163 HOH HOH . D 4 HOH A 162 562 164 HOH HOH . D 4 HOH A 163 563 165 HOH HOH . D 4 HOH A 164 564 166 HOH HOH . D 4 HOH A 165 565 167 HOH HOH . D 4 HOH A 166 566 168 HOH HOH . D 4 HOH A 167 567 169 HOH HOH . D 4 HOH A 168 568 170 HOH HOH . D 4 HOH A 169 569 171 HOH HOH . D 4 HOH A 170 570 172 HOH HOH . D 4 HOH A 171 571 173 HOH HOH . D 4 HOH A 172 572 174 HOH HOH . D 4 HOH A 173 573 175 HOH HOH . D 4 HOH A 174 574 176 HOH HOH . D 4 HOH A 175 575 177 HOH HOH . D 4 HOH A 176 576 178 HOH HOH . D 4 HOH A 177 577 179 HOH HOH . D 4 HOH A 178 578 180 HOH HOH . D 4 HOH A 179 579 181 HOH HOH . D 4 HOH A 180 580 182 HOH HOH . D 4 HOH A 181 581 183 HOH HOH . D 4 HOH A 182 582 184 HOH HOH . D 4 HOH A 183 583 185 HOH HOH . D 4 HOH A 184 584 186 HOH HOH . D 4 HOH A 185 585 187 HOH HOH . D 4 HOH A 186 586 188 HOH HOH . D 4 HOH A 187 587 189 HOH HOH . D 4 HOH A 188 588 190 HOH HOH . D 4 HOH A 189 589 191 HOH HOH . D 4 HOH A 190 590 192 HOH HOH . D 4 HOH A 191 591 193 HOH HOH . D 4 HOH A 192 592 194 HOH HOH . D 4 HOH A 193 593 195 HOH HOH . D 4 HOH A 194 594 196 HOH HOH . D 4 HOH A 195 595 197 HOH HOH . D 4 HOH A 196 596 198 HOH HOH . D 4 HOH A 197 597 199 HOH HOH . D 4 HOH A 198 598 200 HOH HOH . D 4 HOH A 199 599 201 HOH HOH . D 4 HOH A 200 600 202 HOH HOH . D 4 HOH A 201 601 203 HOH HOH . D 4 HOH A 202 602 204 HOH HOH . D 4 HOH A 203 603 205 HOH HOH . D 4 HOH A 204 604 206 HOH HOH . D 4 HOH A 205 605 207 HOH HOH . D 4 HOH A 206 606 208 HOH HOH . D 4 HOH A 207 607 209 HOH HOH . D 4 HOH A 208 608 210 HOH HOH . D 4 HOH A 209 609 211 HOH HOH . D 4 HOH A 210 610 212 HOH HOH . D 4 HOH A 211 611 213 HOH HOH . D 4 HOH A 212 612 214 HOH HOH . D 4 HOH A 213 613 215 HOH HOH . D 4 HOH A 214 614 216 HOH HOH . D 4 HOH A 215 615 217 HOH HOH . D 4 HOH A 216 616 218 HOH HOH . D 4 HOH A 217 617 219 HOH HOH . D 4 HOH A 218 618 220 HOH HOH . D 4 HOH A 219 619 221 HOH HOH . D 4 HOH A 220 620 222 HOH HOH . D 4 HOH A 221 621 223 HOH HOH . D 4 HOH A 222 622 224 HOH HOH . D 4 HOH A 223 623 225 HOH HOH . D 4 HOH A 224 624 226 HOH HOH . D 4 HOH A 225 625 227 HOH HOH . D 4 HOH A 226 626 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . C 3 53.864 -15.325 34.947 0.6 55.31 ? P1 POP 302 A 1 HETATM 2 O O1 POP . . . C 3 52.763 -14.366 35.32 0.6 54.96 ? O1 POP 302 A 1 HETATM 3 O O2 POP . . . C 3 54.307 -16.134 36.137 0.6 54.89 ? O2 POP 302 A 1 HETATM 4 O O3 POP . . . C 3 53.326 -16.251 33.891 0.6 56.65 ? O3 POP 302 A 1 HETATM 5 O O POP . . . C 3 55.118 -14.468 34.382 0.6 55.76 ? O POP 302 A 1 HETATM 6 P P2 POP . . . C 3 55.852 -14.81 32.976 0.6 56.47 ? P2 POP 302 A 1 HETATM 7 O O4 POP . . . C 3 56.158 -16.29 32.939 0.6 57.83 ? O4 POP 302 A 1 HETATM 8 O O5 POP . . . C 3 57.147 -14.043 32.89 0.6 54.61 ? O5 POP 302 A 1 HETATM 9 O O6 POP . . . C 3 54.957 -14.472 31.79 0.6 54.73 ? O6 POP 302 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #