data_4ECP # _model_server_result.job_id 4lb2TB8TMxqyUhiLgan5Ng _model_server_result.datetime_utc '2024-10-10 07:24:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ecp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4ECP # _exptl.entry_id 4ECP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ECP _cell.length_a 121.18 _cell.length_b 121.18 _cell.length_c 66.34 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ECP _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4ECP _atom_sites.fract_transf_matrix[1][1] 0.008252 _atom_sites.fract_transf_matrix[1][2] 0.004764 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 1 EDO EDO . D 2 EDO A 1 202 2 EDO EDO . E 2 EDO B 1 201 3 EDO EDO . F 3 HOH A 1 301 1 HOH HOH . F 3 HOH A 2 302 2 HOH HOH . F 3 HOH A 3 303 3 HOH HOH . F 3 HOH A 4 304 4 HOH HOH . F 3 HOH A 5 305 5 HOH HOH . F 3 HOH A 6 306 6 HOH HOH . F 3 HOH A 7 307 7 HOH HOH . F 3 HOH A 8 308 8 HOH HOH . F 3 HOH A 9 309 9 HOH HOH . F 3 HOH A 10 310 10 HOH HOH . F 3 HOH A 11 311 11 HOH HOH . F 3 HOH A 12 312 12 HOH HOH . F 3 HOH A 13 313 13 HOH HOH . F 3 HOH A 14 314 14 HOH HOH . F 3 HOH A 15 315 15 HOH HOH . F 3 HOH A 16 316 16 HOH HOH . F 3 HOH A 17 317 17 HOH HOH . F 3 HOH A 18 318 18 HOH HOH . F 3 HOH A 19 319 25 HOH HOH . F 3 HOH A 20 320 26 HOH HOH . F 3 HOH A 21 321 27 HOH HOH . F 3 HOH A 22 322 28 HOH HOH . F 3 HOH A 23 323 29 HOH HOH . F 3 HOH A 24 324 30 HOH HOH . F 3 HOH A 25 325 31 HOH HOH . F 3 HOH A 26 326 32 HOH HOH . F 3 HOH A 27 327 34 HOH HOH . F 3 HOH A 28 328 35 HOH HOH . F 3 HOH A 29 329 36 HOH HOH . F 3 HOH A 30 330 37 HOH HOH . F 3 HOH A 31 331 38 HOH HOH . F 3 HOH A 32 332 39 HOH HOH . F 3 HOH A 33 333 40 HOH HOH . F 3 HOH A 34 334 41 HOH HOH . F 3 HOH A 35 335 42 HOH HOH . F 3 HOH A 36 336 43 HOH HOH . F 3 HOH A 37 337 44 HOH HOH . F 3 HOH A 38 338 45 HOH HOH . F 3 HOH A 39 339 46 HOH HOH . F 3 HOH A 40 340 47 HOH HOH . F 3 HOH A 41 341 48 HOH HOH . F 3 HOH A 42 342 49 HOH HOH . F 3 HOH A 43 343 50 HOH HOH . F 3 HOH A 44 344 51 HOH HOH . F 3 HOH A 45 345 52 HOH HOH . F 3 HOH A 46 346 53 HOH HOH . F 3 HOH A 47 347 54 HOH HOH . F 3 HOH A 48 348 71 HOH HOH . F 3 HOH A 49 349 72 HOH HOH . F 3 HOH A 50 350 73 HOH HOH . F 3 HOH A 51 351 74 HOH HOH . F 3 HOH A 52 352 75 HOH HOH . F 3 HOH A 53 353 76 HOH HOH . F 3 HOH A 54 354 77 HOH HOH . F 3 HOH A 55 355 78 HOH HOH . F 3 HOH A 56 356 79 HOH HOH . F 3 HOH A 57 357 80 HOH HOH . F 3 HOH A 58 358 81 HOH HOH . F 3 HOH A 59 359 82 HOH HOH . F 3 HOH A 60 360 83 HOH HOH . F 3 HOH A 61 361 122 HOH HOH . F 3 HOH A 62 362 123 HOH HOH . F 3 HOH A 63 363 124 HOH HOH . F 3 HOH A 64 364 125 HOH HOH . F 3 HOH A 65 365 126 HOH HOH . F 3 HOH A 66 366 127 HOH HOH . F 3 HOH A 67 367 128 HOH HOH . F 3 HOH A 68 368 129 HOH HOH . F 3 HOH A 69 369 130 HOH HOH . F 3 HOH A 70 370 131 HOH HOH . F 3 HOH A 71 371 132 HOH HOH . F 3 HOH A 72 372 133 HOH HOH . F 3 HOH A 73 373 134 HOH HOH . F 3 HOH A 74 374 135 HOH HOH . F 3 HOH A 75 375 136 HOH HOH . F 3 HOH A 76 376 137 HOH HOH . F 3 HOH A 77 377 138 HOH HOH . F 3 HOH A 78 378 139 HOH HOH . F 3 HOH A 79 379 140 HOH HOH . F 3 HOH A 80 380 141 HOH HOH . F 3 HOH A 81 381 142 HOH HOH . F 3 HOH A 82 382 143 HOH HOH . F 3 HOH A 83 383 144 HOH HOH . F 3 HOH A 84 384 145 HOH HOH . F 3 HOH A 85 385 146 HOH HOH . F 3 HOH A 86 386 147 HOH HOH . F 3 HOH A 87 387 148 HOH HOH . F 3 HOH A 88 388 149 HOH HOH . F 3 HOH A 89 389 151 HOH HOH . F 3 HOH A 90 390 168 HOH HOH . F 3 HOH A 91 391 169 HOH HOH . F 3 HOH A 92 392 170 HOH HOH . F 3 HOH A 93 393 171 HOH HOH . G 3 HOH B 1 301 19 HOH HOH . G 3 HOH B 2 302 20 HOH HOH . G 3 HOH B 3 303 21 HOH HOH . G 3 HOH B 4 304 22 HOH HOH . G 3 HOH B 5 305 23 HOH HOH . G 3 HOH B 6 306 24 HOH HOH . G 3 HOH B 7 307 33 HOH HOH . G 3 HOH B 8 308 55 HOH HOH . G 3 HOH B 9 309 56 HOH HOH . G 3 HOH B 10 310 57 HOH HOH . G 3 HOH B 11 311 58 HOH HOH . G 3 HOH B 12 312 59 HOH HOH . G 3 HOH B 13 313 60 HOH HOH . G 3 HOH B 14 314 61 HOH HOH . G 3 HOH B 15 315 62 HOH HOH . G 3 HOH B 16 316 63 HOH HOH . G 3 HOH B 17 317 64 HOH HOH . G 3 HOH B 18 318 65 HOH HOH . G 3 HOH B 19 319 66 HOH HOH . G 3 HOH B 20 320 67 HOH HOH . G 3 HOH B 21 321 68 HOH HOH . G 3 HOH B 22 322 69 HOH HOH . G 3 HOH B 23 323 70 HOH HOH . G 3 HOH B 24 324 84 HOH HOH . G 3 HOH B 25 325 85 HOH HOH . G 3 HOH B 26 326 86 HOH HOH . G 3 HOH B 27 327 87 HOH HOH . G 3 HOH B 28 328 88 HOH HOH . G 3 HOH B 29 329 89 HOH HOH . G 3 HOH B 30 330 90 HOH HOH . G 3 HOH B 31 331 91 HOH HOH . G 3 HOH B 32 332 92 HOH HOH . G 3 HOH B 33 333 93 HOH HOH . G 3 HOH B 34 334 94 HOH HOH . G 3 HOH B 35 335 95 HOH HOH . G 3 HOH B 36 336 96 HOH HOH . G 3 HOH B 37 337 97 HOH HOH . G 3 HOH B 38 338 98 HOH HOH . G 3 HOH B 39 339 99 HOH HOH . G 3 HOH B 40 340 100 HOH HOH . G 3 HOH B 41 341 101 HOH HOH . G 3 HOH B 42 342 102 HOH HOH . G 3 HOH B 43 343 103 HOH HOH . G 3 HOH B 44 344 104 HOH HOH . G 3 HOH B 45 345 105 HOH HOH . G 3 HOH B 46 346 106 HOH HOH . G 3 HOH B 47 347 107 HOH HOH . G 3 HOH B 48 348 108 HOH HOH . G 3 HOH B 49 349 109 HOH HOH . G 3 HOH B 50 350 110 HOH HOH . G 3 HOH B 51 351 111 HOH HOH . G 3 HOH B 52 352 112 HOH HOH . G 3 HOH B 53 353 113 HOH HOH . G 3 HOH B 54 354 114 HOH HOH . G 3 HOH B 55 355 115 HOH HOH . G 3 HOH B 56 356 116 HOH HOH . G 3 HOH B 57 357 117 HOH HOH . G 3 HOH B 58 358 118 HOH HOH . G 3 HOH B 59 359 119 HOH HOH . G 3 HOH B 60 360 120 HOH HOH . G 3 HOH B 61 361 121 HOH HOH . G 3 HOH B 62 362 150 HOH HOH . G 3 HOH B 63 363 152 HOH HOH . G 3 HOH B 64 364 153 HOH HOH . G 3 HOH B 65 365 154 HOH HOH . G 3 HOH B 66 366 155 HOH HOH . G 3 HOH B 67 367 156 HOH HOH . G 3 HOH B 68 368 157 HOH HOH . G 3 HOH B 69 369 158 HOH HOH . G 3 HOH B 70 370 159 HOH HOH . G 3 HOH B 71 371 160 HOH HOH . G 3 HOH B 72 372 161 HOH HOH . G 3 HOH B 73 373 162 HOH HOH . G 3 HOH B 74 374 163 HOH HOH . G 3 HOH B 75 375 164 HOH HOH . G 3 HOH B 76 376 165 HOH HOH . G 3 HOH B 77 377 166 HOH HOH . G 3 HOH B 78 378 167 HOH HOH . G 3 HOH B 79 379 172 HOH HOH . G 3 HOH B 80 380 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 12.427 17.446 -23.404 1 47.91 ? C1 EDO 201 B 1 HETATM 2 O O1 EDO . . . E 2 12.807 17.117 -22.062 1 45.9 ? O1 EDO 201 B 1 HETATM 3 C C2 EDO . . . E 2 12.709 18.918 -23.676 1 45.41 ? C2 EDO 201 B 1 HETATM 4 O O2 EDO . . . E 2 11.97 19.284 -24.848 1 53.42 ? O2 EDO 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #