data_4ED5
#
_model_server_result.job_id            o5mZdWgEjutbxrUF9BJ6Gw 
_model_server_result.datetime_utc      '2024-10-11 02:19:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ed5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    4ED5 
#
_exptl.entry_id    4ED5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.89 
_cell.angle_gamma         90 
_cell.entry_id            4ED5 
_cell.length_a            136.77 
_cell.length_b            62.75 
_cell.length_c            53.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ED5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,M,N,O,R 1 1 
B,C,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 M N N 
? 3 N N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 164 n n 
C1 C2 GOL sing 165 n n 
C1 H11 GOL sing 166 n n 
C1 H12 GOL sing 167 n n 
O1 HO1 GOL sing 168 n n 
C2 O2 GOL sing 169 n n 
C2 C3 GOL sing 170 n n 
C2 H2 GOL sing 171 n n 
O2 HO2 GOL sing 172 n n 
C3 O3 GOL sing 173 n n 
C3 H31 GOL sing 174 n n 
C3 H32 GOL sing 175 n n 
O3 HO3 GOL sing 176 n n 
#
_atom_sites.entry_id                     4ED5 
_atom_sites.fract_transf_matrix[1][1]    0.007312 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002938 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015936 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020223 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 201 1 GOL GOL . 
F 3 GOL A 1 202 2 GOL GOL . 
G 3 GOL A 1 203 3 GOL GOL . 
H 3 GOL A 1 204 5 GOL GOL . 
I 3 GOL A 1 205 7 GOL GOL . 
J 4 M2M A 1 206 1 M2M PEG . 
K 5 EDO A 1 207 2 EDO PEG . 
L 5 EDO A 1 208 3 EDO PEG . 
M 3 GOL D 1 101 4 GOL GOL . 
N 3 GOL D 1 102 6 GOL GOL . 
O 6 HOH A 1 301 1 HOH HOH . 
O 6 HOH A 2 302 4 HOH HOH . 
O 6 HOH A 3 303 5 HOH HOH . 
O 6 HOH A 4 304 7 HOH HOH . 
O 6 HOH A 5 305 8 HOH HOH . 
O 6 HOH A 6 306 10 HOH HOH . 
O 6 HOH A 7 307 11 HOH HOH . 
O 6 HOH A 8 308 14 HOH HOH . 
O 6 HOH A 9 309 15 HOH HOH . 
O 6 HOH A 10 310 16 HOH HOH . 
O 6 HOH A 11 311 17 HOH HOH . 
O 6 HOH A 12 312 18 HOH HOH . 
O 6 HOH A 13 313 19 HOH HOH . 
O 6 HOH A 14 314 20 HOH HOH . 
O 6 HOH A 15 315 21 HOH HOH . 
O 6 HOH A 16 316 26 HOH HOH . 
O 6 HOH A 17 317 27 HOH HOH . 
O 6 HOH A 18 318 28 HOH HOH . 
O 6 HOH A 19 319 29 HOH HOH . 
O 6 HOH A 20 320 30 HOH HOH . 
O 6 HOH A 21 321 31 HOH HOH . 
O 6 HOH A 22 322 32 HOH HOH . 
O 6 HOH A 23 323 34 HOH HOH . 
O 6 HOH A 24 324 35 HOH HOH . 
O 6 HOH A 25 325 38 HOH HOH . 
O 6 HOH A 26 326 40 HOH HOH . 
O 6 HOH A 27 327 43 HOH HOH . 
O 6 HOH A 28 328 44 HOH HOH . 
O 6 HOH A 29 329 47 HOH HOH . 
O 6 HOH A 30 330 48 HOH HOH . 
O 6 HOH A 31 331 49 HOH HOH . 
O 6 HOH A 32 332 52 HOH HOH . 
O 6 HOH A 33 333 55 HOH HOH . 
O 6 HOH A 34 334 56 HOH HOH . 
O 6 HOH A 35 335 58 HOH HOH . 
O 6 HOH A 36 336 59 HOH HOH . 
O 6 HOH A 37 337 63 HOH HOH . 
O 6 HOH A 38 338 64 HOH HOH . 
O 6 HOH A 39 339 65 HOH HOH . 
O 6 HOH A 40 340 68 HOH HOH . 
O 6 HOH A 41 341 73 HOH HOH . 
O 6 HOH A 42 342 74 HOH HOH . 
O 6 HOH A 43 343 76 HOH HOH . 
O 6 HOH A 44 344 79 HOH HOH . 
O 6 HOH A 45 345 80 HOH HOH . 
O 6 HOH A 46 346 81 HOH HOH . 
O 6 HOH A 47 347 82 HOH HOH . 
O 6 HOH A 48 348 83 HOH HOH . 
O 6 HOH A 49 349 84 HOH HOH . 
O 6 HOH A 50 350 85 HOH HOH . 
O 6 HOH A 51 351 86 HOH HOH . 
O 6 HOH A 52 352 88 HOH HOH . 
O 6 HOH A 53 353 89 HOH HOH . 
O 6 HOH A 54 354 91 HOH HOH . 
O 6 HOH A 55 355 93 HOH HOH . 
O 6 HOH A 56 356 94 HOH HOH . 
O 6 HOH A 57 357 95 HOH HOH . 
O 6 HOH A 58 358 99 HOH HOH . 
O 6 HOH A 59 359 100 HOH HOH . 
O 6 HOH A 60 360 101 HOH HOH . 
O 6 HOH A 61 361 102 HOH HOH . 
O 6 HOH A 62 362 104 HOH HOH . 
O 6 HOH A 63 363 109 HOH HOH . 
O 6 HOH A 64 364 110 HOH HOH . 
O 6 HOH A 65 365 111 HOH HOH . 
O 6 HOH A 66 366 112 HOH HOH . 
O 6 HOH A 67 367 113 HOH HOH . 
O 6 HOH A 68 368 114 HOH HOH . 
O 6 HOH A 69 369 119 HOH HOH . 
O 6 HOH A 70 370 123 HOH HOH . 
O 6 HOH A 71 371 126 HOH HOH . 
O 6 HOH A 72 372 127 HOH HOH . 
O 6 HOH A 73 373 130 HOH HOH . 
O 6 HOH A 74 374 131 HOH HOH . 
O 6 HOH A 75 375 133 HOH HOH . 
O 6 HOH A 76 376 134 HOH HOH . 
O 6 HOH A 77 377 137 HOH HOH . 
O 6 HOH A 78 378 139 HOH HOH . 
O 6 HOH A 79 379 141 HOH HOH . 
O 6 HOH A 80 380 142 HOH HOH . 
O 6 HOH A 81 381 143 HOH HOH . 
O 6 HOH A 82 382 145 HOH HOH . 
O 6 HOH A 83 383 149 HOH HOH . 
O 6 HOH A 84 384 152 HOH HOH . 
O 6 HOH A 85 385 156 HOH HOH . 
O 6 HOH A 86 386 157 HOH HOH . 
O 6 HOH A 87 387 159 HOH HOH . 
O 6 HOH A 88 388 163 HOH HOH . 
O 6 HOH A 89 389 164 HOH HOH . 
O 6 HOH A 90 390 165 HOH HOH . 
O 6 HOH A 91 391 167 HOH HOH . 
O 6 HOH A 92 392 168 HOH HOH . 
O 6 HOH A 93 393 169 HOH HOH . 
O 6 HOH A 94 394 170 HOH HOH . 
O 6 HOH A 95 395 172 HOH HOH . 
O 6 HOH A 96 396 174 HOH HOH . 
O 6 HOH A 97 397 175 HOH HOH . 
O 6 HOH A 98 398 179 HOH HOH . 
O 6 HOH A 99 399 180 HOH HOH . 
O 6 HOH A 100 400 181 HOH HOH . 
O 6 HOH A 101 401 182 HOH HOH . 
O 6 HOH A 102 402 183 HOH HOH . 
O 6 HOH A 103 403 185 HOH HOH . 
O 6 HOH A 104 404 186 HOH HOH . 
O 6 HOH A 105 405 187 HOH HOH . 
O 6 HOH A 106 406 192 HOH HOH . 
O 6 HOH A 107 407 194 HOH HOH . 
O 6 HOH A 108 408 195 HOH HOH . 
O 6 HOH A 109 409 199 HOH HOH . 
O 6 HOH A 110 410 200 HOH HOH . 
O 6 HOH A 111 411 202 HOH HOH . 
O 6 HOH A 112 412 203 HOH HOH . 
O 6 HOH A 113 413 205 HOH HOH . 
O 6 HOH A 114 414 207 HOH HOH . 
O 6 HOH A 115 415 209 HOH HOH . 
O 6 HOH A 116 416 215 HOH HOH . 
O 6 HOH A 117 417 216 HOH HOH . 
O 6 HOH A 118 418 217 HOH HOH . 
O 6 HOH A 119 419 218 HOH HOH . 
O 6 HOH A 120 420 219 HOH HOH . 
O 6 HOH A 121 421 221 HOH HOH . 
O 6 HOH A 122 422 223 HOH HOH . 
O 6 HOH A 123 423 228 HOH HOH . 
O 6 HOH A 124 424 229 HOH HOH . 
O 6 HOH A 125 425 230 HOH HOH . 
O 6 HOH A 126 426 234 HOH HOH . 
O 6 HOH A 127 427 236 HOH HOH . 
O 6 HOH A 128 428 238 HOH HOH . 
O 6 HOH A 129 429 239 HOH HOH . 
O 6 HOH A 130 430 242 HOH HOH . 
O 6 HOH A 131 431 244 HOH HOH . 
O 6 HOH A 132 432 245 HOH HOH . 
O 6 HOH A 133 433 246 HOH HOH . 
O 6 HOH A 134 434 247 HOH HOH . 
O 6 HOH A 135 435 248 HOH HOH . 
O 6 HOH A 136 436 251 HOH HOH . 
O 6 HOH A 137 437 252 HOH HOH . 
O 6 HOH A 138 438 253 HOH HOH . 
O 6 HOH A 139 439 255 HOH HOH . 
O 6 HOH A 140 440 256 HOH HOH . 
O 6 HOH A 141 441 257 HOH HOH . 
O 6 HOH A 142 442 259 HOH HOH . 
O 6 HOH A 143 443 260 HOH HOH . 
O 6 HOH A 144 444 261 HOH HOH . 
O 6 HOH A 145 445 262 HOH HOH . 
O 6 HOH A 146 446 263 HOH HOH . 
O 6 HOH A 147 447 264 HOH HOH . 
P 6 HOH B 1 201 3 HOH HOH . 
P 6 HOH B 2 202 6 HOH HOH . 
P 6 HOH B 3 203 9 HOH HOH . 
P 6 HOH B 4 204 13 HOH HOH . 
P 6 HOH B 5 205 22 HOH HOH . 
P 6 HOH B 6 206 24 HOH HOH . 
P 6 HOH B 7 207 25 HOH HOH . 
P 6 HOH B 8 208 36 HOH HOH . 
P 6 HOH B 9 209 37 HOH HOH . 
P 6 HOH B 10 210 46 HOH HOH . 
P 6 HOH B 11 211 50 HOH HOH . 
P 6 HOH B 12 212 51 HOH HOH . 
P 6 HOH B 13 213 53 HOH HOH . 
P 6 HOH B 14 214 54 HOH HOH . 
P 6 HOH B 15 215 61 HOH HOH . 
P 6 HOH B 16 216 66 HOH HOH . 
P 6 HOH B 17 217 67 HOH HOH . 
P 6 HOH B 18 218 69 HOH HOH . 
P 6 HOH B 19 219 70 HOH HOH . 
P 6 HOH B 20 220 71 HOH HOH . 
P 6 HOH B 21 221 75 HOH HOH . 
P 6 HOH B 22 222 77 HOH HOH . 
P 6 HOH B 23 223 78 HOH HOH . 
P 6 HOH B 24 224 87 HOH HOH . 
P 6 HOH B 25 225 92 HOH HOH . 
P 6 HOH B 26 226 96 HOH HOH . 
P 6 HOH B 27 227 97 HOH HOH . 
P 6 HOH B 28 228 103 HOH HOH . 
P 6 HOH B 29 229 105 HOH HOH . 
P 6 HOH B 30 230 108 HOH HOH . 
P 6 HOH B 31 231 115 HOH HOH . 
P 6 HOH B 32 232 116 HOH HOH . 
P 6 HOH B 33 233 117 HOH HOH . 
P 6 HOH B 34 234 118 HOH HOH . 
P 6 HOH B 35 235 122 HOH HOH . 
P 6 HOH B 36 236 124 HOH HOH . 
P 6 HOH B 37 237 128 HOH HOH . 
P 6 HOH B 38 238 129 HOH HOH . 
P 6 HOH B 39 239 135 HOH HOH . 
P 6 HOH B 40 240 138 HOH HOH . 
P 6 HOH B 41 241 140 HOH HOH . 
P 6 HOH B 42 242 144 HOH HOH . 
P 6 HOH B 43 243 146 HOH HOH . 
P 6 HOH B 44 244 147 HOH HOH . 
P 6 HOH B 45 245 150 HOH HOH . 
P 6 HOH B 46 246 151 HOH HOH . 
P 6 HOH B 47 247 154 HOH HOH . 
P 6 HOH B 48 248 155 HOH HOH . 
P 6 HOH B 49 249 161 HOH HOH . 
P 6 HOH B 50 250 162 HOH HOH . 
P 6 HOH B 51 251 166 HOH HOH . 
P 6 HOH B 52 252 171 HOH HOH . 
P 6 HOH B 53 253 177 HOH HOH . 
P 6 HOH B 54 254 184 HOH HOH . 
P 6 HOH B 55 255 188 HOH HOH . 
P 6 HOH B 56 256 189 HOH HOH . 
P 6 HOH B 57 257 190 HOH HOH . 
P 6 HOH B 58 258 193 HOH HOH . 
P 6 HOH B 59 259 196 HOH HOH . 
P 6 HOH B 60 260 198 HOH HOH . 
P 6 HOH B 61 261 204 HOH HOH . 
P 6 HOH B 62 262 206 HOH HOH . 
P 6 HOH B 63 263 214 HOH HOH . 
P 6 HOH B 64 264 220 HOH HOH . 
P 6 HOH B 65 265 222 HOH HOH . 
P 6 HOH B 66 266 225 HOH HOH . 
P 6 HOH B 67 267 226 HOH HOH . 
P 6 HOH B 68 268 227 HOH HOH . 
P 6 HOH B 69 269 231 HOH HOH . 
P 6 HOH B 70 270 232 HOH HOH . 
P 6 HOH B 71 271 233 HOH HOH . 
P 6 HOH B 72 272 235 HOH HOH . 
P 6 HOH B 73 273 243 HOH HOH . 
P 6 HOH B 74 274 249 HOH HOH . 
P 6 HOH B 75 275 254 HOH HOH . 
P 6 HOH B 76 276 258 HOH HOH . 
Q 6 HOH C 1 101 42 HOH HOH . 
Q 6 HOH C 2 102 60 HOH HOH . 
Q 6 HOH C 3 103 72 HOH HOH . 
Q 6 HOH C 4 104 132 HOH HOH . 
Q 6 HOH C 5 105 153 HOH HOH . 
Q 6 HOH C 6 106 158 HOH HOH . 
Q 6 HOH C 7 107 173 HOH HOH . 
Q 6 HOH C 8 108 176 HOH HOH . 
Q 6 HOH C 9 109 191 HOH HOH . 
Q 6 HOH C 10 110 210 HOH HOH . 
Q 6 HOH C 11 111 250 HOH HOH . 
R 6 HOH D 1 201 2 HOH HOH . 
R 6 HOH D 2 202 12 HOH HOH . 
R 6 HOH D 3 203 23 HOH HOH . 
R 6 HOH D 4 204 33 HOH HOH . 
R 6 HOH D 5 205 39 HOH HOH . 
R 6 HOH D 6 206 41 HOH HOH . 
R 6 HOH D 7 207 45 HOH HOH . 
R 6 HOH D 8 208 62 HOH HOH . 
R 6 HOH D 9 209 98 HOH HOH . 
R 6 HOH D 10 210 106 HOH HOH . 
R 6 HOH D 11 211 107 HOH HOH . 
R 6 HOH D 12 212 121 HOH HOH . 
R 6 HOH D 13 213 125 HOH HOH . 
R 6 HOH D 14 214 148 HOH HOH . 
R 6 HOH D 15 215 197 HOH HOH . 
R 6 HOH D 16 216 208 HOH HOH . 
R 6 HOH D 17 217 212 HOH HOH . 
R 6 HOH D 18 218 241 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -23.624 9.503 17.403 1 33.78 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . E 3 -22.298 9.133 17.666 1 30.27 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . E 3 -24.209 8.559 16.371 1 36.09 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . E 3 -24.683 7.403 17.024 1 36.03 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . E 3 -25.339 9.259 15.62 1 38.27 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . E 3 -25.475 8.704 14.322 1 40.62 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#