data_4EDA # _model_server_result.job_id LbOTYtBymszK_T5niVUL_g _model_server_result.datetime_utc '2024-10-18 16:28:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":404}' # _entry.id 4EDA # _exptl.entry_id 4EDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4EDA _cell.length_a 208.126 _cell.length_b 208.126 _cell.length_c 65.765 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,K,L 1 1 C,D,F,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 330 NAG 3 n E NAG 2 E 2 NAG A 331 NAG 3 n F NAG 1 F 1 NAG C 330 NAG 3 n F NAG 2 F 2 NAG C 331 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 4 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 51 A CYS 42 1_555 A SG CYS 284 A CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 64 A CYS 55 1_555 A SG CYS 76 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 99 A CYS 90 1_555 A SG CYS 145 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf5 A SG CYS 288 A CYS 279 1_555 A SG CYS 312 A CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 51 C CYS 42 1_555 C SG CYS 284 C CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf8 C SG CYS 64 C CYS 55 1_555 C SG CYS 76 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 C SG CYS 99 C CYS 90 1_555 C SG CYS 145 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf10 C SG CYS 288 C CYS 279 1_555 C SG CYS 312 C CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 D SG CYS 144 D CYS 144 1_555 D SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 96 A ASN 87 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale2 A ND2 ASN 285 A ASN 276 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 296 A ASN 287 1_555 H C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale4 C ND2 ASN 96 C ASN 87 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale5 C ND2 ASN 285 C ASN 276 1_555 I C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 C ND2 ASN 296 C ASN 287 1_555 J C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4EDA _atom_sites.fract_transf_matrix[1][1] 0.004805 _atom_sites.fract_transf_matrix[1][2] 0.002774 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 403 403 NAG NAG . H 4 NAG A 1 404 335 NAG NAG . I 4 NAG C 1 403 403 NAG NAG . J 4 NAG C 1 404 335 NAG NAG . K 5 HOH A 1 501 2 HOH HOH . K 5 HOH A 2 502 3 HOH HOH . K 5 HOH A 3 503 8 HOH HOH . K 5 HOH A 4 504 9 HOH HOH . K 5 HOH A 5 505 11 HOH HOH . K 5 HOH A 6 506 14 HOH HOH . K 5 HOH A 7 507 16 HOH HOH . K 5 HOH A 8 508 17 HOH HOH . K 5 HOH A 9 509 18 HOH HOH . K 5 HOH A 10 510 19 HOH HOH . K 5 HOH A 11 511 21 HOH HOH . K 5 HOH A 12 512 25 HOH HOH . K 5 HOH A 13 513 26 HOH HOH . K 5 HOH A 14 514 27 HOH HOH . K 5 HOH A 15 515 28 HOH HOH . K 5 HOH A 16 516 29 HOH HOH . K 5 HOH A 17 517 34 HOH HOH . K 5 HOH A 18 518 35 HOH HOH . K 5 HOH A 19 519 36 HOH HOH . K 5 HOH A 20 520 37 HOH HOH . K 5 HOH A 21 521 38 HOH HOH . K 5 HOH A 22 522 42 HOH HOH . K 5 HOH A 23 523 49 HOH HOH . K 5 HOH A 24 524 50 HOH HOH . K 5 HOH A 25 525 51 HOH HOH . K 5 HOH A 26 526 52 HOH HOH . K 5 HOH A 27 527 53 HOH HOH . K 5 HOH A 28 528 54 HOH HOH . K 5 HOH A 29 529 55 HOH HOH . K 5 HOH A 30 530 56 HOH HOH . L 5 HOH B 1 201 39 HOH HOH . L 5 HOH B 2 202 41 HOH HOH . L 5 HOH B 3 203 63 HOH HOH . M 5 HOH C 1 501 1 HOH HOH . M 5 HOH C 2 502 4 HOH HOH . M 5 HOH C 3 503 5 HOH HOH . M 5 HOH C 4 504 6 HOH HOH . M 5 HOH C 5 505 10 HOH HOH . M 5 HOH C 6 506 12 HOH HOH . M 5 HOH C 7 507 13 HOH HOH . M 5 HOH C 8 508 15 HOH HOH . M 5 HOH C 9 509 20 HOH HOH . M 5 HOH C 10 510 22 HOH HOH . M 5 HOH C 11 511 23 HOH HOH . M 5 HOH C 12 512 24 HOH HOH . M 5 HOH C 13 513 30 HOH HOH . M 5 HOH C 14 514 43 HOH HOH . M 5 HOH C 15 515 44 HOH HOH . M 5 HOH C 16 516 45 HOH HOH . M 5 HOH C 17 517 46 HOH HOH . M 5 HOH C 18 518 47 HOH HOH . M 5 HOH C 19 519 48 HOH HOH . M 5 HOH C 20 520 57 HOH HOH . M 5 HOH C 21 521 58 HOH HOH . M 5 HOH C 22 522 59 HOH HOH . M 5 HOH C 23 523 60 HOH HOH . M 5 HOH C 24 524 61 HOH HOH . M 5 HOH C 25 525 62 HOH HOH . N 5 HOH D 1 201 7 HOH HOH . N 5 HOH D 2 202 31 HOH HOH . N 5 HOH D 3 203 32 HOH HOH . N 5 HOH D 4 204 33 HOH HOH . N 5 HOH D 5 205 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 4 43.373 -67.603 44.008 1 135.99 ? C1 NAG 404 C 1 HETATM 2 C C2 NAG . . . J 4 44.624 -68.483 44.105 1 139.11 ? C2 NAG 404 C 1 HETATM 3 C C3 NAG . . . J 4 44.798 -69.068 45.504 1 136.53 ? C3 NAG 404 C 1 HETATM 4 C C4 NAG . . . J 4 44.689 -67.963 46.544 1 133.92 ? C4 NAG 404 C 1 HETATM 5 C C5 NAG . . . J 4 43.368 -67.215 46.363 1 134.3 ? C5 NAG 404 C 1 HETATM 6 C C6 NAG . . . J 4 43.197 -66.134 47.432 1 132.15 ? C6 NAG 404 C 1 HETATM 7 C C7 NAG . . . J 4 43.484 -70.25 42.839 1 137.34 ? C7 NAG 404 C 1 HETATM 8 C C8 NAG . . . J 4 43.155 -71.422 43.72 1 131.15 ? C8 NAG 404 C 1 HETATM 9 N N2 NAG . . . J 4 44.591 -69.565 43.132 1 139.93 ? N2 NAG 404 C 1 HETATM 10 O O3 NAG . . . J 4 46.036 -69.743 45.613 1 135.28 ? O3 NAG 404 C 1 HETATM 11 O O4 NAG . . . J 4 44.772 -68.52 47.836 1 132.28 ? O4 NAG 404 C 1 HETATM 12 O O5 NAG . . . J 4 43.298 -66.654 45.061 1 133.05 ? O5 NAG 404 C 1 HETATM 13 O O6 NAG . . . J 4 41.828 -65.891 47.688 1 129.15 ? O6 NAG 404 C 1 HETATM 14 O O7 NAG . . . J 4 42.751 -69.968 41.891 1 136.66 ? O7 NAG 404 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 14 #