data_4EDL
#
_model_server_result.job_id            CH9gqxPoAu5DPg2wlmJQ5w 
_model_server_result.datetime_utc      '2024-11-23 04:25:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4edl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":402}' 
#
_entry.id    4EDL 
#
_exptl.entry_id    4EDL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.49 
_cell.angle_gamma         90 
_cell.entry_id            4EDL 
_cell.length_a            80.893 
_cell.length_b            52.584 
_cell.length_c            82.331 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EDL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,X 1 1 
B,K,Y 2 1 
C,L,M,Z 3 1 
D,N,O,P,Q,R,S,AA 4 1 
E,T,BA 5 1 
F,U,V,W,CA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     4EDL 
_atom_sites.fract_transf_matrix[1][1]    0.012362 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002512 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019017 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 EDO A 1 401 5 EDO EDO . 
H 2 EDO A 1 402 8 EDO EDO . 
I 2 EDO A 1 403 11 EDO EDO . 
J 2 EDO A 1 404 12 EDO EDO . 
K 2 EDO B 1 401 3 EDO EDO . 
L 2 EDO C 1 401 1 EDO EDO . 
M 2 EDO C 1 402 7 EDO EDO . 
N 2 EDO D 1 401 4 EDO EDO . 
O 2 EDO D 1 402 9 EDO EDO . 
P 2 EDO D 1 403 10 EDO EDO . 
Q 2 EDO D 1 404 14 EDO EDO . 
R 2 EDO D 1 405 15 EDO EDO . 
S 2 EDO D 1 406 17 EDO EDO . 
T 2 EDO E 1 401 2 EDO EDO . 
U 2 EDO F 1 401 6 EDO EDO . 
V 2 EDO F 1 402 13 EDO EDO . 
W 2 EDO F 1 403 16 EDO EDO . 
X 3 HOH A 1 501 8 HOH HOH . 
X 3 HOH A 2 502 9 HOH HOH . 
X 3 HOH A 3 503 21 HOH HOH . 
X 3 HOH A 4 504 22 HOH HOH . 
X 3 HOH A 5 505 24 HOH HOH . 
X 3 HOH A 6 506 30 HOH HOH . 
X 3 HOH A 7 507 32 HOH HOH . 
X 3 HOH A 8 508 41 HOH HOH . 
X 3 HOH A 9 509 55 HOH HOH . 
X 3 HOH A 10 510 57 HOH HOH . 
X 3 HOH A 11 511 61 HOH HOH . 
X 3 HOH A 12 512 63 HOH HOH . 
X 3 HOH A 13 513 76 HOH HOH . 
X 3 HOH A 14 514 78 HOH HOH . 
X 3 HOH A 15 515 81 HOH HOH . 
X 3 HOH A 16 516 87 HOH HOH . 
X 3 HOH A 17 517 92 HOH HOH . 
X 3 HOH A 18 518 93 HOH HOH . 
X 3 HOH A 19 519 117 HOH HOH . 
X 3 HOH A 20 520 122 HOH HOH . 
X 3 HOH A 21 521 129 HOH HOH . 
X 3 HOH A 22 522 133 HOH HOH . 
X 3 HOH A 23 523 137 HOH HOH . 
X 3 HOH A 24 524 142 HOH HOH . 
X 3 HOH A 25 525 148 HOH HOH . 
X 3 HOH A 26 526 156 HOH HOH . 
X 3 HOH A 27 527 157 HOH HOH . 
X 3 HOH A 28 528 163 HOH HOH . 
X 3 HOH A 29 529 165 HOH HOH . 
X 3 HOH A 30 530 167 HOH HOH . 
X 3 HOH A 31 531 178 HOH HOH . 
X 3 HOH A 32 532 181 HOH HOH . 
X 3 HOH A 33 533 190 HOH HOH . 
X 3 HOH A 34 534 202 HOH HOH . 
X 3 HOH A 35 535 204 HOH HOH . 
X 3 HOH A 36 536 212 HOH HOH . 
X 3 HOH A 37 537 216 HOH HOH . 
X 3 HOH A 38 538 227 HOH HOH . 
X 3 HOH A 39 539 230 HOH HOH . 
X 3 HOH A 40 540 232 HOH HOH . 
X 3 HOH A 41 541 233 HOH HOH . 
Y 3 HOH B 1 501 2 HOH HOH . 
Y 3 HOH B 2 502 6 HOH HOH . 
Y 3 HOH B 3 503 10 HOH HOH . 
Y 3 HOH B 4 504 16 HOH HOH . 
Y 3 HOH B 5 505 18 HOH HOH . 
Y 3 HOH B 6 506 19 HOH HOH . 
Y 3 HOH B 7 507 27 HOH HOH . 
Y 3 HOH B 8 508 35 HOH HOH . 
Y 3 HOH B 9 509 39 HOH HOH . 
Y 3 HOH B 10 510 45 HOH HOH . 
Y 3 HOH B 11 511 46 HOH HOH . 
Y 3 HOH B 12 512 50 HOH HOH . 
Y 3 HOH B 13 513 54 HOH HOH . 
Y 3 HOH B 14 514 66 HOH HOH . 
Y 3 HOH B 15 515 67 HOH HOH . 
Y 3 HOH B 16 516 68 HOH HOH . 
Y 3 HOH B 17 517 69 HOH HOH . 
Y 3 HOH B 18 518 70 HOH HOH . 
Y 3 HOH B 19 519 71 HOH HOH . 
Y 3 HOH B 20 520 83 HOH HOH . 
Y 3 HOH B 21 521 84 HOH HOH . 
Y 3 HOH B 22 522 85 HOH HOH . 
Y 3 HOH B 23 523 86 HOH HOH . 
Y 3 HOH B 24 524 88 HOH HOH . 
Y 3 HOH B 25 525 89 HOH HOH . 
Y 3 HOH B 26 526 100 HOH HOH . 
Y 3 HOH B 27 527 102 HOH HOH . 
Y 3 HOH B 28 528 104 HOH HOH . 
Y 3 HOH B 29 529 106 HOH HOH . 
Y 3 HOH B 30 530 113 HOH HOH . 
Y 3 HOH B 31 531 114 HOH HOH . 
Y 3 HOH B 32 532 118 HOH HOH . 
Y 3 HOH B 33 533 120 HOH HOH . 
Y 3 HOH B 34 534 123 HOH HOH . 
Y 3 HOH B 35 535 124 HOH HOH . 
Y 3 HOH B 36 536 126 HOH HOH . 
Y 3 HOH B 37 537 131 HOH HOH . 
Y 3 HOH B 38 538 134 HOH HOH . 
Y 3 HOH B 39 539 135 HOH HOH . 
Y 3 HOH B 40 540 147 HOH HOH . 
Y 3 HOH B 41 541 158 HOH HOH . 
Y 3 HOH B 42 542 160 HOH HOH . 
Y 3 HOH B 43 543 161 HOH HOH . 
Y 3 HOH B 44 544 170 HOH HOH . 
Y 3 HOH B 45 545 172 HOH HOH . 
Y 3 HOH B 46 546 176 HOH HOH . 
Y 3 HOH B 47 547 182 HOH HOH . 
Y 3 HOH B 48 548 186 HOH HOH . 
Y 3 HOH B 49 549 188 HOH HOH . 
Y 3 HOH B 50 550 189 HOH HOH . 
Y 3 HOH B 51 551 195 HOH HOH . 
Y 3 HOH B 52 552 196 HOH HOH . 
Y 3 HOH B 53 553 217 HOH HOH . 
Y 3 HOH B 54 554 229 HOH HOH . 
Y 3 HOH B 55 555 185 HOH HOH . 
Z 3 HOH C 1 501 3 HOH HOH . 
Z 3 HOH C 2 502 13 HOH HOH . 
Z 3 HOH C 3 503 14 HOH HOH . 
Z 3 HOH C 4 504 29 HOH HOH . 
Z 3 HOH C 5 505 33 HOH HOH . 
Z 3 HOH C 6 506 36 HOH HOH . 
Z 3 HOH C 7 507 37 HOH HOH . 
Z 3 HOH C 8 508 47 HOH HOH . 
Z 3 HOH C 9 509 48 HOH HOH . 
Z 3 HOH C 10 510 59 HOH HOH . 
Z 3 HOH C 11 511 75 HOH HOH . 
Z 3 HOH C 12 512 79 HOH HOH . 
Z 3 HOH C 13 513 82 HOH HOH . 
Z 3 HOH C 14 514 90 HOH HOH . 
Z 3 HOH C 15 515 91 HOH HOH . 
Z 3 HOH C 16 516 98 HOH HOH . 
Z 3 HOH C 17 517 99 HOH HOH . 
Z 3 HOH C 18 518 103 HOH HOH . 
Z 3 HOH C 19 519 105 HOH HOH . 
Z 3 HOH C 20 520 108 HOH HOH . 
Z 3 HOH C 21 521 111 HOH HOH . 
Z 3 HOH C 22 522 136 HOH HOH . 
Z 3 HOH C 23 523 138 HOH HOH . 
Z 3 HOH C 24 524 152 HOH HOH . 
Z 3 HOH C 25 525 153 HOH HOH . 
Z 3 HOH C 26 526 155 HOH HOH . 
Z 3 HOH C 27 527 164 HOH HOH . 
Z 3 HOH C 28 528 166 HOH HOH . 
Z 3 HOH C 29 529 171 HOH HOH . 
Z 3 HOH C 30 530 175 HOH HOH . 
Z 3 HOH C 31 531 187 HOH HOH . 
Z 3 HOH C 32 532 192 HOH HOH . 
Z 3 HOH C 33 533 199 HOH HOH . 
Z 3 HOH C 34 534 200 HOH HOH . 
Z 3 HOH C 35 535 201 HOH HOH . 
Z 3 HOH C 36 536 203 HOH HOH . 
Z 3 HOH C 37 537 220 HOH HOH . 
AA 3 HOH D 1 501 1 HOH HOH . 
AA 3 HOH D 2 502 5 HOH HOH . 
AA 3 HOH D 3 503 7 HOH HOH . 
AA 3 HOH D 4 504 15 HOH HOH . 
AA 3 HOH D 5 505 17 HOH HOH . 
AA 3 HOH D 6 506 25 HOH HOH . 
AA 3 HOH D 7 507 28 HOH HOH . 
AA 3 HOH D 8 508 38 HOH HOH . 
AA 3 HOH D 9 509 49 HOH HOH . 
AA 3 HOH D 10 510 56 HOH HOH . 
AA 3 HOH D 11 511 58 HOH HOH . 
AA 3 HOH D 12 512 65 HOH HOH . 
AA 3 HOH D 13 513 77 HOH HOH . 
AA 3 HOH D 14 514 94 HOH HOH . 
AA 3 HOH D 15 515 116 HOH HOH . 
AA 3 HOH D 16 516 121 HOH HOH . 
AA 3 HOH D 17 517 130 HOH HOH . 
AA 3 HOH D 18 518 144 HOH HOH . 
AA 3 HOH D 19 519 145 HOH HOH . 
AA 3 HOH D 20 520 146 HOH HOH . 
AA 3 HOH D 21 521 149 HOH HOH . 
AA 3 HOH D 22 522 154 HOH HOH . 
AA 3 HOH D 23 523 162 HOH HOH . 
AA 3 HOH D 24 524 169 HOH HOH . 
AA 3 HOH D 25 525 174 HOH HOH . 
AA 3 HOH D 26 526 177 HOH HOH . 
AA 3 HOH D 27 527 179 HOH HOH . 
AA 3 HOH D 28 528 180 HOH HOH . 
AA 3 HOH D 29 529 191 HOH HOH . 
AA 3 HOH D 30 530 194 HOH HOH . 
AA 3 HOH D 31 531 207 HOH HOH . 
AA 3 HOH D 32 532 208 HOH HOH . 
AA 3 HOH D 33 533 211 HOH HOH . 
AA 3 HOH D 34 534 218 HOH HOH . 
AA 3 HOH D 35 535 221 HOH HOH . 
AA 3 HOH D 36 536 224 HOH HOH . 
AA 3 HOH D 37 537 225 HOH HOH . 
AA 3 HOH D 38 538 228 HOH HOH . 
BA 3 HOH E 1 501 4 HOH HOH . 
BA 3 HOH E 2 502 12 HOH HOH . 
BA 3 HOH E 3 503 20 HOH HOH . 
BA 3 HOH E 4 504 31 HOH HOH . 
BA 3 HOH E 5 505 34 HOH HOH . 
BA 3 HOH E 6 506 43 HOH HOH . 
BA 3 HOH E 7 507 44 HOH HOH . 
BA 3 HOH E 8 508 53 HOH HOH . 
BA 3 HOH E 9 509 60 HOH HOH . 
BA 3 HOH E 10 510 62 HOH HOH . 
BA 3 HOH E 11 511 64 HOH HOH . 
BA 3 HOH E 12 512 80 HOH HOH . 
BA 3 HOH E 13 513 95 HOH HOH . 
BA 3 HOH E 14 514 96 HOH HOH . 
BA 3 HOH E 15 515 97 HOH HOH . 
BA 3 HOH E 16 516 101 HOH HOH . 
BA 3 HOH E 17 517 107 HOH HOH . 
BA 3 HOH E 18 518 109 HOH HOH . 
BA 3 HOH E 19 519 110 HOH HOH . 
BA 3 HOH E 20 520 112 HOH HOH . 
BA 3 HOH E 21 521 115 HOH HOH . 
BA 3 HOH E 22 522 125 HOH HOH . 
BA 3 HOH E 23 523 132 HOH HOH . 
BA 3 HOH E 24 524 139 HOH HOH . 
BA 3 HOH E 25 525 140 HOH HOH . 
BA 3 HOH E 26 526 141 HOH HOH . 
BA 3 HOH E 27 527 151 HOH HOH . 
BA 3 HOH E 28 528 159 HOH HOH . 
BA 3 HOH E 29 529 168 HOH HOH . 
BA 3 HOH E 30 530 183 HOH HOH . 
BA 3 HOH E 31 531 184 HOH HOH . 
BA 3 HOH E 32 532 205 HOH HOH . 
BA 3 HOH E 33 533 209 HOH HOH . 
BA 3 HOH E 34 534 210 HOH HOH . 
BA 3 HOH E 35 535 222 HOH HOH . 
BA 3 HOH E 36 536 234 HOH HOH . 
CA 3 HOH F 1 501 11 HOH HOH . 
CA 3 HOH F 2 502 23 HOH HOH . 
CA 3 HOH F 3 503 26 HOH HOH . 
CA 3 HOH F 4 504 40 HOH HOH . 
CA 3 HOH F 5 505 42 HOH HOH . 
CA 3 HOH F 6 506 51 HOH HOH . 
CA 3 HOH F 7 507 52 HOH HOH . 
CA 3 HOH F 8 508 72 HOH HOH . 
CA 3 HOH F 9 509 73 HOH HOH . 
CA 3 HOH F 10 510 74 HOH HOH . 
CA 3 HOH F 11 511 119 HOH HOH . 
CA 3 HOH F 12 512 127 HOH HOH . 
CA 3 HOH F 13 513 128 HOH HOH . 
CA 3 HOH F 14 514 143 HOH HOH . 
CA 3 HOH F 15 515 150 HOH HOH . 
CA 3 HOH F 16 516 173 HOH HOH . 
CA 3 HOH F 17 517 193 HOH HOH . 
CA 3 HOH F 18 518 197 HOH HOH . 
CA 3 HOH F 19 519 198 HOH HOH . 
CA 3 HOH F 20 520 206 HOH HOH . 
CA 3 HOH F 21 521 213 HOH HOH . 
CA 3 HOH F 22 522 214 HOH HOH . 
CA 3 HOH F 23 523 215 HOH HOH . 
CA 3 HOH F 24 524 219 HOH HOH . 
CA 3 HOH F 25 525 223 HOH HOH . 
CA 3 HOH F 26 526 226 HOH HOH . 
CA 3 HOH F 27 527 231 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . V 2 20.451 29.43 -1.227 1 57.93 ? C1 EDO 402 F 1 
HETATM 2 O O1 EDO . . . V 2 21.172 28.222 -1.476 1 60.97 ? O1 EDO 402 F 1 
HETATM 3 C C2 EDO . . . V 2 19.561 29.685 -2.428 1 56.87 ? C2 EDO 402 F 1 
HETATM 4 O O2 EDO . . . V 2 18.208 29.499 -2.024 1 57.3 ? O2 EDO 402 F 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#