data_4EDM # _model_server_result.job_id bGP2xpZXIXB7tchrYgiTdQ _model_server_result.datetime_utc '2024-10-19 02:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4edm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4EDM # _exptl.entry_id 4EDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EDM _cell.length_a 49.36 _cell.length_b 67.438 _cell.length_c 105.712 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 4EDM _atom_sites.fract_transf_matrix[1][1] 0.020259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 401 3 EDO EDO . D 2 EDO A 1 402 4 EDO EDO . E 2 EDO A 1 403 5 EDO EDO . F 2 EDO A 1 404 6 EDO EDO . G 2 EDO B 1 401 2 EDO EDO . H 2 EDO B 1 402 1 EDO EDO . I 2 EDO B 1 403 7 EDO EDO . J 3 HOH A 1 501 1 HOH HOH . J 3 HOH A 2 502 2 HOH HOH . J 3 HOH A 3 503 3 HOH HOH . J 3 HOH A 4 504 4 HOH HOH . J 3 HOH A 5 505 5 HOH HOH . J 3 HOH A 6 506 8 HOH HOH . J 3 HOH A 7 507 9 HOH HOH . J 3 HOH A 8 508 10 HOH HOH . J 3 HOH A 9 509 11 HOH HOH . J 3 HOH A 10 510 13 HOH HOH . J 3 HOH A 11 511 15 HOH HOH . J 3 HOH A 12 512 19 HOH HOH . J 3 HOH A 13 513 22 HOH HOH . J 3 HOH A 14 514 26 HOH HOH . J 3 HOH A 15 515 28 HOH HOH . J 3 HOH A 16 516 29 HOH HOH . J 3 HOH A 17 517 31 HOH HOH . J 3 HOH A 18 518 34 HOH HOH . J 3 HOH A 19 519 35 HOH HOH . J 3 HOH A 20 520 36 HOH HOH . J 3 HOH A 21 521 38 HOH HOH . J 3 HOH A 22 522 39 HOH HOH . J 3 HOH A 23 523 40 HOH HOH . J 3 HOH A 24 524 41 HOH HOH . J 3 HOH A 25 525 44 HOH HOH . J 3 HOH A 26 526 45 HOH HOH . J 3 HOH A 27 527 46 HOH HOH . J 3 HOH A 28 528 47 HOH HOH . J 3 HOH A 29 529 48 HOH HOH . J 3 HOH A 30 530 49 HOH HOH . J 3 HOH A 31 531 50 HOH HOH . J 3 HOH A 32 532 51 HOH HOH . J 3 HOH A 33 533 52 HOH HOH . J 3 HOH A 34 534 54 HOH HOH . J 3 HOH A 35 535 57 HOH HOH . J 3 HOH A 36 536 58 HOH HOH . J 3 HOH A 37 537 59 HOH HOH . J 3 HOH A 38 538 60 HOH HOH . J 3 HOH A 39 539 67 HOH HOH . J 3 HOH A 40 540 69 HOH HOH . J 3 HOH A 41 541 70 HOH HOH . J 3 HOH A 42 542 72 HOH HOH . J 3 HOH A 43 543 75 HOH HOH . J 3 HOH A 44 544 77 HOH HOH . J 3 HOH A 45 545 78 HOH HOH . J 3 HOH A 46 546 79 HOH HOH . J 3 HOH A 47 547 80 HOH HOH . J 3 HOH A 48 548 81 HOH HOH . J 3 HOH A 49 549 82 HOH HOH . J 3 HOH A 50 550 84 HOH HOH . J 3 HOH A 51 551 85 HOH HOH . J 3 HOH A 52 552 86 HOH HOH . J 3 HOH A 53 553 87 HOH HOH . J 3 HOH A 54 554 88 HOH HOH . J 3 HOH A 55 555 89 HOH HOH . J 3 HOH A 56 556 91 HOH HOH . J 3 HOH A 57 557 95 HOH HOH . J 3 HOH A 58 558 97 HOH HOH . J 3 HOH A 59 559 98 HOH HOH . J 3 HOH A 60 560 99 HOH HOH . J 3 HOH A 61 561 100 HOH HOH . J 3 HOH A 62 562 101 HOH HOH . J 3 HOH A 63 563 102 HOH HOH . J 3 HOH A 64 564 103 HOH HOH . J 3 HOH A 65 565 104 HOH HOH . J 3 HOH A 66 566 105 HOH HOH . J 3 HOH A 67 567 106 HOH HOH . J 3 HOH A 68 568 107 HOH HOH . J 3 HOH A 69 569 108 HOH HOH . J 3 HOH A 70 570 109 HOH HOH . J 3 HOH A 71 571 110 HOH HOH . J 3 HOH A 72 572 112 HOH HOH . J 3 HOH A 73 573 115 HOH HOH . J 3 HOH A 74 574 116 HOH HOH . J 3 HOH A 75 575 53 HOH HOH . K 3 HOH B 1 501 6 HOH HOH . K 3 HOH B 2 502 7 HOH HOH . K 3 HOH B 3 503 12 HOH HOH . K 3 HOH B 4 504 14 HOH HOH . K 3 HOH B 5 505 16 HOH HOH . K 3 HOH B 6 506 17 HOH HOH . K 3 HOH B 7 507 18 HOH HOH . K 3 HOH B 8 508 20 HOH HOH . K 3 HOH B 9 509 21 HOH HOH . K 3 HOH B 10 510 23 HOH HOH . K 3 HOH B 11 511 24 HOH HOH . K 3 HOH B 12 512 25 HOH HOH . K 3 HOH B 13 513 27 HOH HOH . K 3 HOH B 14 514 30 HOH HOH . K 3 HOH B 15 515 32 HOH HOH . K 3 HOH B 16 516 33 HOH HOH . K 3 HOH B 17 517 37 HOH HOH . K 3 HOH B 18 518 42 HOH HOH . K 3 HOH B 19 519 43 HOH HOH . K 3 HOH B 20 520 55 HOH HOH . K 3 HOH B 21 521 56 HOH HOH . K 3 HOH B 22 522 61 HOH HOH . K 3 HOH B 23 523 62 HOH HOH . K 3 HOH B 24 524 63 HOH HOH . K 3 HOH B 25 525 64 HOH HOH . K 3 HOH B 26 526 65 HOH HOH . K 3 HOH B 27 527 66 HOH HOH . K 3 HOH B 28 528 68 HOH HOH . K 3 HOH B 29 529 71 HOH HOH . K 3 HOH B 30 530 73 HOH HOH . K 3 HOH B 31 531 74 HOH HOH . K 3 HOH B 32 532 76 HOH HOH . K 3 HOH B 33 533 83 HOH HOH . K 3 HOH B 34 534 90 HOH HOH . K 3 HOH B 35 535 92 HOH HOH . K 3 HOH B 36 536 93 HOH HOH . K 3 HOH B 37 537 94 HOH HOH . K 3 HOH B 38 538 96 HOH HOH . K 3 HOH B 39 539 111 HOH HOH . K 3 HOH B 40 540 113 HOH HOH . K 3 HOH B 41 541 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 31.721 15.808 26.511 1 80.68 ? C1 EDO 401 A 1 HETATM 2 O O1 EDO . . . C 2 30.895 16.776 25.831 1 70.84 ? O1 EDO 401 A 1 HETATM 3 C C2 EDO . . . C 2 31.491 14.395 25.949 1 74.17 ? C2 EDO 401 A 1 HETATM 4 O O2 EDO . . . C 2 32.155 14.198 24.69 1 81.5 ? O2 EDO 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #