data_4EDW # _model_server_result.job_id jpsTNStZSzNZlGYGpN1s-g _model_server_result.datetime_utc '2024-12-21 15:03:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4edw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4EDW # _exptl.entry_id 4EDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EDW _cell.length_a 64.7 _cell.length_b 92.707 _cell.length_c 252.729 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 V CYS 15 1_555 A SG CYS 80 V CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 58 V CYS 58 1_555 A SG CYS 108 V CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 68 V CYS 68 1_555 A SG CYS 110 V CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf5 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 B SG CYS 214 L CYS 214 1_555 C SG CYS 135 H CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 C SG CYS 22 H CYS 22 1_555 C SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf8 C SG CYS 148 H CYS 140 1_555 C SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4EDW _atom_sites.fract_transf_matrix[1][1] 0.015456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL H 1 301 9 GOL GOL . E 5 HOH V 1 201 1 HOH HOH . E 5 HOH V 2 202 7 HOH HOH . E 5 HOH V 3 203 20 HOH HOH . F 5 HOH L 1 301 2 HOH HOH . F 5 HOH L 2 302 4 HOH HOH . F 5 HOH L 3 303 5 HOH HOH . F 5 HOH L 4 304 8 HOH HOH . F 5 HOH L 5 305 10 HOH HOH . F 5 HOH L 6 306 12 HOH HOH . F 5 HOH L 7 307 14 HOH HOH . F 5 HOH L 8 308 15 HOH HOH . F 5 HOH L 9 309 16 HOH HOH . F 5 HOH L 10 310 17 HOH HOH . F 5 HOH L 11 311 21 HOH HOH . F 5 HOH L 12 312 22 HOH HOH . F 5 HOH L 13 313 25 HOH HOH . F 5 HOH L 14 314 26 HOH HOH . F 5 HOH L 15 315 27 HOH HOH . F 5 HOH L 16 316 28 HOH HOH . F 5 HOH L 17 317 29 HOH HOH . F 5 HOH L 18 318 31 HOH HOH . F 5 HOH L 19 319 32 HOH HOH . F 5 HOH L 20 320 36 HOH HOH . G 5 HOH H 1 401 3 HOH HOH . G 5 HOH H 2 402 6 HOH HOH . G 5 HOH H 3 403 11 HOH HOH . G 5 HOH H 4 404 13 HOH HOH . G 5 HOH H 5 405 18 HOH HOH . G 5 HOH H 6 406 19 HOH HOH . G 5 HOH H 7 407 23 HOH HOH . G 5 HOH H 8 408 24 HOH HOH . G 5 HOH H 9 409 30 HOH HOH . G 5 HOH H 10 410 33 HOH HOH . G 5 HOH H 11 411 34 HOH HOH . G 5 HOH H 12 412 35 HOH HOH . G 5 HOH H 13 413 37 HOH HOH . G 5 HOH H 14 414 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -5.524 -24.556 -9.003 1 60.49 ? C1 GOL 301 H 1 HETATM 2 O O1 GOL . . . D 4 -5.227 -23.584 -9.991 1 59.42 ? O1 GOL 301 H 1 HETATM 3 C C2 GOL . . . D 4 -6.676 -24.126 -8.127 1 65.51 ? C2 GOL 301 H 1 HETATM 4 O O2 GOL . . . D 4 -6.299 -23.005 -7.32 1 70.29 ? O2 GOL 301 H 1 HETATM 5 C C3 GOL . . . D 4 -6.989 -25.296 -7.23 1 66.08 ? C3 GOL 301 H 1 HETATM 6 O O3 GOL . . . D 4 -8.185 -25.065 -6.528 1 68.06 ? O3 GOL 301 H 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #