data_4EEP # _model_server_result.job_id FeLwJ6nap3bE6DFDhVAA5Q _model_server_result.datetime_utc '2024-11-24 18:42:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4EEP # _exptl.entry_id 4EEP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EEP _cell.length_a 40.502 _cell.length_b 40.502 _cell.length_c 127.315 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4EEP _atom_sites.fract_transf_matrix[1][1] 0.02469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1001 1001 FMN FMN . C 3 HOH A 1 1101 1 HOH HOH . C 3 HOH A 2 1102 2 HOH HOH . C 3 HOH A 3 1103 3 HOH HOH . C 3 HOH A 4 1104 4 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 7 HOH HOH . C 3 HOH A 8 1108 8 HOH HOH . C 3 HOH A 9 1109 9 HOH HOH . C 3 HOH A 10 1110 10 HOH HOH . C 3 HOH A 11 1111 11 HOH HOH . C 3 HOH A 12 1112 12 HOH HOH . C 3 HOH A 13 1113 13 HOH HOH . C 3 HOH A 14 1114 14 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 16 HOH HOH . C 3 HOH A 17 1117 17 HOH HOH . C 3 HOH A 18 1118 18 HOH HOH . C 3 HOH A 19 1119 19 HOH HOH . C 3 HOH A 20 1120 20 HOH HOH . C 3 HOH A 21 1121 21 HOH HOH . C 3 HOH A 22 1122 22 HOH HOH . C 3 HOH A 23 1123 23 HOH HOH . C 3 HOH A 24 1124 24 HOH HOH . C 3 HOH A 25 1125 25 HOH HOH . C 3 HOH A 26 1126 28 HOH HOH . C 3 HOH A 27 1127 29 HOH HOH . C 3 HOH A 28 1128 31 HOH HOH . C 3 HOH A 29 1129 33 HOH HOH . C 3 HOH A 30 1130 34 HOH HOH . C 3 HOH A 31 1131 37 HOH HOH . C 3 HOH A 32 1132 38 HOH HOH . C 3 HOH A 33 1133 42 HOH HOH . C 3 HOH A 34 1134 43 HOH HOH . C 3 HOH A 35 1135 44 HOH HOH . C 3 HOH A 36 1136 45 HOH HOH . C 3 HOH A 37 1137 47 HOH HOH . C 3 HOH A 38 1138 48 HOH HOH . C 3 HOH A 39 1139 49 HOH HOH . C 3 HOH A 40 1140 50 HOH HOH . C 3 HOH A 41 1141 51 HOH HOH . C 3 HOH A 42 1142 52 HOH HOH . C 3 HOH A 43 1143 53 HOH HOH . C 3 HOH A 44 1144 54 HOH HOH . C 3 HOH A 45 1145 55 HOH HOH . C 3 HOH A 46 1146 56 HOH HOH . C 3 HOH A 47 1147 57 HOH HOH . C 3 HOH A 48 1148 58 HOH HOH . C 3 HOH A 49 1149 59 HOH HOH . C 3 HOH A 50 1150 60 HOH HOH . C 3 HOH A 51 1151 62 HOH HOH . C 3 HOH A 52 1152 63 HOH HOH . C 3 HOH A 53 1153 64 HOH HOH . C 3 HOH A 54 1154 65 HOH HOH . C 3 HOH A 55 1155 66 HOH HOH . C 3 HOH A 56 1156 67 HOH HOH . C 3 HOH A 57 1157 68 HOH HOH . C 3 HOH A 58 1158 69 HOH HOH . C 3 HOH A 59 1159 71 HOH HOH . C 3 HOH A 60 1160 72 HOH HOH . C 3 HOH A 61 1161 73 HOH HOH . C 3 HOH A 62 1162 74 HOH HOH . C 3 HOH A 63 1163 75 HOH HOH . C 3 HOH A 64 1164 78 HOH HOH . C 3 HOH A 65 1165 79 HOH HOH . C 3 HOH A 66 1166 80 HOH HOH . C 3 HOH A 67 1167 81 HOH HOH . C 3 HOH A 68 1168 82 HOH HOH . C 3 HOH A 69 1169 83 HOH HOH . C 3 HOH A 70 1170 84 HOH HOH . C 3 HOH A 71 1171 85 HOH HOH . C 3 HOH A 72 1172 87 HOH HOH . C 3 HOH A 73 1173 89 HOH HOH . C 3 HOH A 74 1174 90 HOH HOH . C 3 HOH A 75 1175 91 HOH HOH . C 3 HOH A 76 1176 93 HOH HOH . C 3 HOH A 77 1177 95 HOH HOH . C 3 HOH A 78 1178 96 HOH HOH . C 3 HOH A 79 1179 98 HOH HOH . C 3 HOH A 80 1180 100 HOH HOH . C 3 HOH A 81 1181 101 HOH HOH . C 3 HOH A 82 1182 102 HOH HOH . C 3 HOH A 83 1183 103 HOH HOH . C 3 HOH A 84 1184 104 HOH HOH . C 3 HOH A 85 1185 105 HOH HOH . C 3 HOH A 86 1186 106 HOH HOH . C 3 HOH A 87 1187 107 HOH HOH . C 3 HOH A 88 1188 108 HOH HOH . C 3 HOH A 89 1189 109 HOH HOH . C 3 HOH A 90 1190 110 HOH HOH . C 3 HOH A 91 1191 111 HOH HOH . C 3 HOH A 92 1192 112 HOH HOH . C 3 HOH A 93 1193 113 HOH HOH . C 3 HOH A 94 1194 114 HOH HOH . C 3 HOH A 95 1195 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -1.206 8.802 43.951 1 24.21 ? N1 FMN 1001 A 1 HETATM 2 C C2 FMN . . . B 2 -1.357 9.555 45.093 1 27.44 ? C2 FMN 1001 A 1 HETATM 3 O O2 FMN . . . B 2 -2.329 10.29 45.199 1 30.86 ? O2 FMN 1001 A 1 HETATM 4 N N3 FMN . . . B 2 -0.429 9.477 46.114 1 28.52 ? N3 FMN 1001 A 1 HETATM 5 C C4 FMN . . . B 2 0.665 8.646 46.007 1 30.56 ? C4 FMN 1001 A 1 HETATM 6 O O4 FMN . . . B 2 1.48 8.609 46.932 1 24.46 ? O4 FMN 1001 A 1 HETATM 7 C C4A FMN . . . B 2 0.821 7.876 44.85 1 24.63 ? C4A FMN 1001 A 1 HETATM 8 N N5 FMN . . . B 2 1.907 7.044 44.703 1 26.56 ? N5 FMN 1001 A 1 HETATM 9 C C5A FMN . . . B 2 2.052 6.294 43.557 1 25.68 ? C5A FMN 1001 A 1 HETATM 10 C C6 FMN . . . B 2 3.158 5.456 43.439 1 31.66 ? C6 FMN 1001 A 1 HETATM 11 C C7 FMN . . . B 2 3.339 4.686 42.295 1 26.27 ? C7 FMN 1001 A 1 HETATM 12 C C7M FMN . . . B 2 4.545 3.795 42.221 1 28.52 ? C7M FMN 1001 A 1 HETATM 13 C C8 FMN . . . B 2 2.408 4.756 41.254 1 23.16 ? C8 FMN 1001 A 1 HETATM 14 C C8M FMN . . . B 2 2.55 3.956 39.988 1 28.76 ? C8M FMN 1001 A 1 HETATM 15 C C9 FMN . . . B 2 1.306 5.602 41.37 1 22.18 ? C9 FMN 1001 A 1 HETATM 16 C C9A FMN . . . B 2 1.116 6.377 42.515 1 20.69 ? C9A FMN 1001 A 1 HETATM 17 N N10 FMN . . . B 2 0.007 7.207 42.667 1 23.24 ? N10 FMN 1001 A 1 HETATM 18 C C10 FMN . . . B 2 -0.121 7.965 43.818 1 24.94 ? C10 FMN 1001 A 1 HETATM 19 C C1' FMN . . . B 2 -1.01 7.383 41.573 1 23.75 ? C1' FMN 1001 A 1 HETATM 20 C C2' FMN . . . B 2 -2.184 6.43 41.51 1 23.9 ? C2' FMN 1001 A 1 HETATM 21 O O2' FMN . . . B 2 -1.762 5.124 41.826 1 21.03 ? O2' FMN 1001 A 1 HETATM 22 C C3' FMN . . . B 2 -2.761 6.502 40.094 1 29.05 ? C3' FMN 1001 A 1 HETATM 23 O O3' FMN . . . B 2 -1.757 6.171 39.134 1 25.93 ? O3' FMN 1001 A 1 HETATM 24 C C4' FMN . . . B 2 -3.328 7.901 39.802 1 27.38 ? C4' FMN 1001 A 1 HETATM 25 O O4' FMN . . . B 2 -4.393 8.209 40.683 1 25.28 ? O4' FMN 1001 A 1 HETATM 26 C C5' FMN . . . B 2 -3.82 8.07 38.365 1 29.19 ? C5' FMN 1001 A 1 HETATM 27 O O5' FMN . . . B 2 -4.523 6.929 37.933 1 27.58 ? O5' FMN 1001 A 1 HETATM 28 P P FMN . . . B 2 -6.114 6.817 38.07 1 30.97 ? P FMN 1001 A 1 HETATM 29 O O1P FMN . . . B 2 -6.555 5.488 37.504 1 28.54 ? O1P FMN 1001 A 1 HETATM 30 O O2P FMN . . . B 2 -6.529 6.96 39.515 1 32.45 ? O2P FMN 1001 A 1 HETATM 31 O O3P FMN . . . B 2 -6.738 7.928 37.249 1 31.87 ? O3P FMN 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #