data_4EER # _model_server_result.job_id NSq8EdhhIys4CZeDd4z3_A _model_server_result.datetime_utc '2024-11-24 20:45:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4EER # _exptl.entry_id 4EER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EER _cell.length_a 41.023 _cell.length_b 41.023 _cell.length_c 123.308 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EER _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4EER _atom_sites.fract_transf_matrix[1][1] 0.024377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1001 1001 FMN FMN . C 3 HOH A 1 1101 1 HOH HOH . C 3 HOH A 2 1102 2 HOH HOH . C 3 HOH A 3 1103 3 HOH HOH . C 3 HOH A 4 1104 4 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 7 HOH HOH . C 3 HOH A 8 1108 8 HOH HOH . C 3 HOH A 9 1109 9 HOH HOH . C 3 HOH A 10 1110 10 HOH HOH . C 3 HOH A 11 1111 11 HOH HOH . C 3 HOH A 12 1112 12 HOH HOH . C 3 HOH A 13 1113 13 HOH HOH . C 3 HOH A 14 1114 14 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 16 HOH HOH . C 3 HOH A 17 1117 17 HOH HOH . C 3 HOH A 18 1118 19 HOH HOH . C 3 HOH A 19 1119 20 HOH HOH . C 3 HOH A 20 1120 21 HOH HOH . C 3 HOH A 21 1121 22 HOH HOH . C 3 HOH A 22 1122 23 HOH HOH . C 3 HOH A 23 1123 24 HOH HOH . C 3 HOH A 24 1124 25 HOH HOH . C 3 HOH A 25 1125 26 HOH HOH . C 3 HOH A 26 1126 27 HOH HOH . C 3 HOH A 27 1127 28 HOH HOH . C 3 HOH A 28 1128 29 HOH HOH . C 3 HOH A 29 1129 30 HOH HOH . C 3 HOH A 30 1130 31 HOH HOH . C 3 HOH A 31 1131 33 HOH HOH . C 3 HOH A 32 1132 34 HOH HOH . C 3 HOH A 33 1133 35 HOH HOH . C 3 HOH A 34 1134 36 HOH HOH . C 3 HOH A 35 1135 37 HOH HOH . C 3 HOH A 36 1136 38 HOH HOH . C 3 HOH A 37 1137 39 HOH HOH . C 3 HOH A 38 1138 40 HOH HOH . C 3 HOH A 39 1139 41 HOH HOH . C 3 HOH A 40 1140 42 HOH HOH . C 3 HOH A 41 1141 43 HOH HOH . C 3 HOH A 42 1142 44 HOH HOH . C 3 HOH A 43 1143 45 HOH HOH . C 3 HOH A 44 1144 46 HOH HOH . C 3 HOH A 45 1145 48 HOH HOH . C 3 HOH A 46 1146 49 HOH HOH . C 3 HOH A 47 1147 50 HOH HOH . C 3 HOH A 48 1148 51 HOH HOH . C 3 HOH A 49 1149 52 HOH HOH . C 3 HOH A 50 1150 53 HOH HOH . C 3 HOH A 51 1151 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -1.378 9.373 42.632 1 24.79 ? N1 FMN 1001 A 1 HETATM 2 C C2 FMN . . . B 2 -1.464 10.232 43.682 1 26.69 ? C2 FMN 1001 A 1 HETATM 3 O O2 FMN . . . B 2 -2.415 10.982 43.796 1 29.2 ? O2 FMN 1001 A 1 HETATM 4 N N3 FMN . . . B 2 -0.507 10.266 44.633 1 27.67 ? N3 FMN 1001 A 1 HETATM 5 C C4 FMN . . . B 2 0.55 9.398 44.569 1 27.07 ? C4 FMN 1001 A 1 HETATM 6 O O4 FMN . . . B 2 1.393 9.487 45.44 1 26.7 ? O4 FMN 1001 A 1 HETATM 7 C C4A FMN . . . B 2 0.675 8.497 43.511 1 26.57 ? C4A FMN 1001 A 1 HETATM 8 N N5 FMN . . . B 2 1.753 7.632 43.46 1 25.13 ? N5 FMN 1001 A 1 HETATM 9 C C5A FMN . . . B 2 1.879 6.79 42.384 1 26.42 ? C5A FMN 1001 A 1 HETATM 10 C C6 FMN . . . B 2 2.988 5.937 42.335 1 25.34 ? C6 FMN 1001 A 1 HETATM 11 C C7 FMN . . . B 2 3.08 5.092 41.258 1 25.75 ? C7 FMN 1001 A 1 HETATM 12 C C7M FMN . . . B 2 4.281 4.188 41.257 1 25.28 ? C7M FMN 1001 A 1 HETATM 13 C C8 FMN . . . B 2 2.118 5.078 40.245 1 25.03 ? C8 FMN 1001 A 1 HETATM 14 C C8M FMN . . . B 2 2.228 4.141 39.082 1 23.35 ? C8M FMN 1001 A 1 HETATM 15 C C9 FMN . . . B 2 1.007 5.926 40.277 1 23.38 ? C9 FMN 1001 A 1 HETATM 16 C C9A FMN . . . B 2 0.894 6.763 41.361 1 24.64 ? C9A FMN 1001 A 1 HETATM 17 N N10 FMN . . . B 2 -0.212 7.636 41.443 1 25.37 ? N10 FMN 1001 A 1 HETATM 18 C C10 FMN . . . B 2 -0.289 8.504 42.527 1 26.77 ? C10 FMN 1001 A 1 HETATM 19 C C1' FMN . . . B 2 -1.204 7.697 40.328 1 23.43 ? C1' FMN 1001 A 1 HETATM 20 C C2' FMN . . . B 2 -2.427 6.826 40.406 1 28.44 ? C2' FMN 1001 A 1 HETATM 21 O O2' FMN . . . B 2 -1.988 5.526 40.757 1 26.94 ? O2' FMN 1001 A 1 HETATM 22 C C3' FMN . . . B 2 -3.069 6.903 39.039 1 26.08 ? C3' FMN 1001 A 1 HETATM 23 O O3' FMN . . . B 2 -2.129 6.53 38.032 1 27.53 ? O3' FMN 1001 A 1 HETATM 24 C C4' FMN . . . B 2 -3.551 8.329 38.717 1 27.36 ? C4' FMN 1001 A 1 HETATM 25 O O4' FMN . . . B 2 -4.667 8.542 39.544 1 29.24 ? O4' FMN 1001 A 1 HETATM 26 C C5' FMN . . . B 2 -3.958 8.454 37.248 1 33.14 ? C5' FMN 1001 A 1 HETATM 27 O O5' FMN . . . B 2 -4.611 7.282 36.759 1 32.47 ? O5' FMN 1001 A 1 HETATM 28 P P FMN . . . B 2 -6.202 7.062 36.878 1 37.47 ? P FMN 1001 A 1 HETATM 29 O O1P FMN . . . B 2 -6.562 5.718 36.329 1 34.79 ? O1P FMN 1001 A 1 HETATM 30 O O2P FMN . . . B 2 -6.595 7.289 38.316 1 38.11 ? O2P FMN 1001 A 1 HETATM 31 O O3P FMN . . . B 2 -6.98 8.081 36.069 1 37.72 ? O3P FMN 1001 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #