data_4EES # _model_server_result.job_id ZUPc7iECe4-JFBkWVOMnRA _model_server_result.datetime_utc '2024-12-01 06:03:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ees # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4EES # _exptl.entry_id 4EES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EES _cell.length_a 40.736 _cell.length_b 40.736 _cell.length_c 123.186 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EES _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4EES _atom_sites.fract_transf_matrix[1][1] 0.024548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1001 1001 FMN FMN . C 3 HOH A 1 1101 1 HOH HOH . C 3 HOH A 2 1102 2 HOH HOH . C 3 HOH A 3 1103 3 HOH HOH . C 3 HOH A 4 1104 4 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 7 HOH HOH . C 3 HOH A 8 1108 8 HOH HOH . C 3 HOH A 9 1109 9 HOH HOH . C 3 HOH A 10 1110 10 HOH HOH . C 3 HOH A 11 1111 11 HOH HOH . C 3 HOH A 12 1112 12 HOH HOH . C 3 HOH A 13 1113 13 HOH HOH . C 3 HOH A 14 1114 14 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 16 HOH HOH . C 3 HOH A 17 1117 17 HOH HOH . C 3 HOH A 18 1118 18 HOH HOH . C 3 HOH A 19 1119 19 HOH HOH . C 3 HOH A 20 1120 20 HOH HOH . C 3 HOH A 21 1121 21 HOH HOH . C 3 HOH A 22 1122 22 HOH HOH . C 3 HOH A 23 1123 23 HOH HOH . C 3 HOH A 24 1124 24 HOH HOH . C 3 HOH A 25 1125 25 HOH HOH . C 3 HOH A 26 1126 26 HOH HOH . C 3 HOH A 27 1127 27 HOH HOH . C 3 HOH A 28 1128 29 HOH HOH . C 3 HOH A 29 1129 30 HOH HOH . C 3 HOH A 30 1130 31 HOH HOH . C 3 HOH A 31 1131 32 HOH HOH . C 3 HOH A 32 1132 33 HOH HOH . C 3 HOH A 33 1133 34 HOH HOH . C 3 HOH A 34 1134 35 HOH HOH . C 3 HOH A 35 1135 37 HOH HOH . C 3 HOH A 36 1136 39 HOH HOH . C 3 HOH A 37 1137 40 HOH HOH . C 3 HOH A 38 1138 41 HOH HOH . C 3 HOH A 39 1139 42 HOH HOH . C 3 HOH A 40 1140 44 HOH HOH . C 3 HOH A 41 1141 45 HOH HOH . C 3 HOH A 42 1142 46 HOH HOH . C 3 HOH A 43 1143 48 HOH HOH . C 3 HOH A 44 1144 49 HOH HOH . C 3 HOH A 45 1145 50 HOH HOH . C 3 HOH A 46 1146 51 HOH HOH . C 3 HOH A 47 1147 52 HOH HOH . C 3 HOH A 48 1148 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -8.826 1.412 18.653 1 23.36 ? N1 FMN 1001 A 1 HETATM 2 C C2 FMN . . . B 2 -9.595 1.565 17.525 1 24.91 ? C2 FMN 1001 A 1 HETATM 3 O O2 FMN . . . B 2 -10.279 2.572 17.391 1 23.3 ? O2 FMN 1001 A 1 HETATM 4 N N3 FMN . . . B 2 -9.54 0.653 16.516 1 19.77 ? N3 FMN 1001 A 1 HETATM 5 C C4 FMN . . . B 2 -8.774 -0.465 16.65 1 22.31 ? C4 FMN 1001 A 1 HETATM 6 O O4 FMN . . . B 2 -8.792 -1.293 15.752 1 19.17 ? O4 FMN 1001 A 1 HETATM 7 C C4A FMN . . . B 2 -8.004 -0.649 17.798 1 19.11 ? C4A FMN 1001 A 1 HETATM 8 N N5 FMN . . . B 2 -7.212 -1.773 17.902 1 20.56 ? N5 FMN 1001 A 1 HETATM 9 C C5A FMN . . . B 2 -6.487 -1.953 19.055 1 16 ? C5A FMN 1001 A 1 HETATM 10 C C6 FMN . . . B 2 -5.729 -3.124 19.158 1 18.56 ? C6 FMN 1001 A 1 HETATM 11 C C7 FMN . . . B 2 -4.977 -3.323 20.315 1 16.4 ? C7 FMN 1001 A 1 HETATM 12 C C7M FMN . . . B 2 -4.154 -4.548 20.492 1 19.37 ? C7M FMN 1001 A 1 HETATM 13 C C8 FMN . . . B 2 -5.015 -2.403 21.364 1 18.29 ? C8 FMN 1001 A 1 HETATM 14 C C8M FMN . . . B 2 -4.241 -2.626 22.625 1 18.93 ? C8M FMN 1001 A 1 HETATM 15 C C9 FMN . . . B 2 -5.799 -1.246 21.268 1 17.3 ? C9 FMN 1001 A 1 HETATM 16 C C9A FMN . . . B 2 -6.531 -1 20.093 1 16.4 ? C9A FMN 1001 A 1 HETATM 17 N N10 FMN . . . B 2 -7.32 0.146 19.962 1 16.77 ? N10 FMN 1001 A 1 HETATM 18 C C10 FMN . . . B 2 -8.05 0.3 18.81 1 17.65 ? C10 FMN 1001 A 1 HETATM 19 C C1' FMN . . . B 2 -7.476 1.163 21.06 1 17.58 ? C1' FMN 1001 A 1 HETATM 20 C C2' FMN . . . B 2 -6.531 2.338 21.059 1 19.95 ? C2' FMN 1001 A 1 HETATM 21 O O2' FMN . . . B 2 -5.211 1.84 20.812 1 21.29 ? O2' FMN 1001 A 1 HETATM 22 C C3' FMN . . . B 2 -6.579 2.922 22.486 1 20.67 ? C3' FMN 1001 A 1 HETATM 23 O O3' FMN . . . B 2 -6.325 1.884 23.442 1 22.91 ? O3' FMN 1001 A 1 HETATM 24 C C4' FMN . . . B 2 -7.938 3.505 22.829 1 22.93 ? C4' FMN 1001 A 1 HETATM 25 O O4' FMN . . . B 2 -8.123 4.63 21.999 1 24.09 ? O4' FMN 1001 A 1 HETATM 26 C C5' FMN . . . B 2 -8.054 3.903 24.3 1 24.41 ? C5' FMN 1001 A 1 HETATM 27 O O5' FMN . . . B 2 -6.935 4.667 24.681 1 27.76 ? O5' FMN 1001 A 1 HETATM 28 P P FMN . . . B 2 -6.826 6.256 24.481 1 32.5 ? P FMN 1001 A 1 HETATM 29 O O1P FMN . . . B 2 -5.489 6.716 25.002 1 25.92 ? O1P FMN 1001 A 1 HETATM 30 O O2P FMN . . . B 2 -6.879 6.737 23.04 1 28.95 ? O2P FMN 1001 A 1 HETATM 31 O O3P FMN . . . B 2 -7.925 6.973 25.274 1 33.74 ? O3P FMN 1001 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #