data_4EET # _model_server_result.job_id xUjPU71t3rpZ7qFomH1KyQ _model_server_result.datetime_utc '2024-11-24 20:24:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eet # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 4EET # _exptl.entry_id 4EET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EET _cell.length_a 46.474 _cell.length_b 46.474 _cell.length_c 207.284 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EET _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,F 1 1 A,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4EET _atom_sites.fract_transf_matrix[1][1] 0.021517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN B 1 501 1547 FMN FMN . D 2 FMN D 1 501 1547 FMN FMN . E 3 HOH B 1 601 1 HOH HOH . E 3 HOH B 2 602 3 HOH HOH . E 3 HOH B 3 603 4 HOH HOH . E 3 HOH B 4 604 5 HOH HOH . E 3 HOH B 5 605 6 HOH HOH . E 3 HOH B 6 606 7 HOH HOH . E 3 HOH B 7 607 8 HOH HOH . E 3 HOH B 8 608 9 HOH HOH . E 3 HOH B 9 609 10 HOH HOH . E 3 HOH B 10 610 15 HOH HOH . E 3 HOH B 11 611 17 HOH HOH . E 3 HOH B 12 612 18 HOH HOH . E 3 HOH B 13 613 24 HOH HOH . E 3 HOH B 14 614 25 HOH HOH . E 3 HOH B 15 615 26 HOH HOH . E 3 HOH B 16 616 28 HOH HOH . E 3 HOH B 17 617 29 HOH HOH . E 3 HOH B 18 618 33 HOH HOH . E 3 HOH B 19 619 34 HOH HOH . E 3 HOH B 20 620 39 HOH HOH . E 3 HOH B 21 621 40 HOH HOH . E 3 HOH B 22 622 42 HOH HOH . E 3 HOH B 23 623 43 HOH HOH . E 3 HOH B 24 624 45 HOH HOH . E 3 HOH B 25 625 46 HOH HOH . E 3 HOH B 26 626 47 HOH HOH . E 3 HOH B 27 627 49 HOH HOH . E 3 HOH B 28 628 50 HOH HOH . E 3 HOH B 29 629 51 HOH HOH . E 3 HOH B 30 630 53 HOH HOH . E 3 HOH B 31 631 54 HOH HOH . E 3 HOH B 32 632 55 HOH HOH . E 3 HOH B 33 633 57 HOH HOH . E 3 HOH B 34 634 58 HOH HOH . E 3 HOH B 35 635 59 HOH HOH . E 3 HOH B 36 636 62 HOH HOH . E 3 HOH B 37 637 63 HOH HOH . E 3 HOH B 38 638 66 HOH HOH . E 3 HOH B 39 639 67 HOH HOH . E 3 HOH B 40 640 70 HOH HOH . E 3 HOH B 41 641 72 HOH HOH . E 3 HOH B 42 642 73 HOH HOH . E 3 HOH B 43 643 74 HOH HOH . E 3 HOH B 44 644 75 HOH HOH . E 3 HOH B 45 645 78 HOH HOH . E 3 HOH B 46 646 79 HOH HOH . E 3 HOH B 47 647 80 HOH HOH . E 3 HOH B 48 648 81 HOH HOH . E 3 HOH B 49 649 82 HOH HOH . E 3 HOH B 50 650 83 HOH HOH . E 3 HOH B 51 651 84 HOH HOH . E 3 HOH B 52 652 100 HOH HOH . E 3 HOH B 53 653 101 HOH HOH . E 3 HOH B 54 654 106 HOH HOH . E 3 HOH B 55 655 107 HOH HOH . E 3 HOH B 56 656 111 HOH HOH . E 3 HOH B 57 657 112 HOH HOH . E 3 HOH B 58 658 113 HOH HOH . E 3 HOH B 59 659 114 HOH HOH . E 3 HOH B 60 660 115 HOH HOH . E 3 HOH B 61 661 116 HOH HOH . E 3 HOH B 62 662 127 HOH HOH . E 3 HOH B 63 663 128 HOH HOH . E 3 HOH B 64 664 129 HOH HOH . E 3 HOH B 65 665 130 HOH HOH . E 3 HOH B 66 666 131 HOH HOH . E 3 HOH B 67 667 132 HOH HOH . E 3 HOH B 68 668 133 HOH HOH . E 3 HOH B 69 669 134 HOH HOH . E 3 HOH B 70 670 136 HOH HOH . E 3 HOH B 71 671 137 HOH HOH . E 3 HOH B 72 672 138 HOH HOH . E 3 HOH B 73 673 139 HOH HOH . E 3 HOH B 74 674 140 HOH HOH . E 3 HOH B 75 675 141 HOH HOH . E 3 HOH B 76 676 142 HOH HOH . E 3 HOH B 77 677 143 HOH HOH . E 3 HOH B 78 678 146 HOH HOH . E 3 HOH B 79 679 147 HOH HOH . E 3 HOH B 80 680 148 HOH HOH . E 3 HOH B 81 681 151 HOH HOH . E 3 HOH B 82 682 152 HOH HOH . E 3 HOH B 83 683 154 HOH HOH . E 3 HOH B 84 684 155 HOH HOH . E 3 HOH B 85 685 156 HOH HOH . E 3 HOH B 86 686 157 HOH HOH . E 3 HOH B 87 687 158 HOH HOH . E 3 HOH B 88 688 159 HOH HOH . E 3 HOH B 89 689 161 HOH HOH . E 3 HOH B 90 690 162 HOH HOH . E 3 HOH B 91 691 163 HOH HOH . E 3 HOH B 92 692 165 HOH HOH . E 3 HOH B 93 693 167 HOH HOH . E 3 HOH B 94 694 168 HOH HOH . E 3 HOH B 95 695 169 HOH HOH . E 3 HOH B 96 696 170 HOH HOH . E 3 HOH B 97 697 171 HOH HOH . E 3 HOH B 98 698 172 HOH HOH . E 3 HOH B 99 699 176 HOH HOH . E 3 HOH B 100 700 180 HOH HOH . E 3 HOH B 101 701 185 HOH HOH . E 3 HOH B 102 702 186 HOH HOH . E 3 HOH B 103 703 187 HOH HOH . E 3 HOH B 104 704 190 HOH HOH . E 3 HOH B 105 705 194 HOH HOH . E 3 HOH B 106 706 196 HOH HOH . E 3 HOH B 107 707 197 HOH HOH . E 3 HOH B 108 708 198 HOH HOH . E 3 HOH B 109 709 200 HOH HOH . E 3 HOH B 110 710 204 HOH HOH . E 3 HOH B 111 711 209 HOH HOH . E 3 HOH B 112 712 212 HOH HOH . E 3 HOH B 113 713 214 HOH HOH . E 3 HOH B 114 714 218 HOH HOH . E 3 HOH B 115 715 219 HOH HOH . E 3 HOH B 116 716 224 HOH HOH . E 3 HOH B 117 717 225 HOH HOH . E 3 HOH B 118 718 228 HOH HOH . F 3 HOH D 1 601 2 HOH HOH . F 3 HOH D 2 602 11 HOH HOH . F 3 HOH D 3 603 12 HOH HOH . F 3 HOH D 4 604 13 HOH HOH . F 3 HOH D 5 605 14 HOH HOH . F 3 HOH D 6 606 16 HOH HOH . F 3 HOH D 7 607 19 HOH HOH . F 3 HOH D 8 608 20 HOH HOH . F 3 HOH D 9 609 21 HOH HOH . F 3 HOH D 10 610 22 HOH HOH . F 3 HOH D 11 611 23 HOH HOH . F 3 HOH D 12 612 27 HOH HOH . F 3 HOH D 13 613 30 HOH HOH . F 3 HOH D 14 614 31 HOH HOH . F 3 HOH D 15 615 32 HOH HOH . F 3 HOH D 16 616 35 HOH HOH . F 3 HOH D 17 617 36 HOH HOH . F 3 HOH D 18 618 37 HOH HOH . F 3 HOH D 19 619 38 HOH HOH . F 3 HOH D 20 620 41 HOH HOH . F 3 HOH D 21 621 44 HOH HOH . F 3 HOH D 22 622 48 HOH HOH . F 3 HOH D 23 623 52 HOH HOH . F 3 HOH D 24 624 56 HOH HOH . F 3 HOH D 25 625 60 HOH HOH . F 3 HOH D 26 626 61 HOH HOH . F 3 HOH D 27 627 64 HOH HOH . F 3 HOH D 28 628 65 HOH HOH . F 3 HOH D 29 629 68 HOH HOH . F 3 HOH D 30 630 69 HOH HOH . F 3 HOH D 31 631 71 HOH HOH . F 3 HOH D 32 632 76 HOH HOH . F 3 HOH D 33 633 77 HOH HOH . F 3 HOH D 34 634 85 HOH HOH . F 3 HOH D 35 635 86 HOH HOH . F 3 HOH D 36 636 87 HOH HOH . F 3 HOH D 37 637 88 HOH HOH . F 3 HOH D 38 638 89 HOH HOH . F 3 HOH D 39 639 90 HOH HOH . F 3 HOH D 40 640 91 HOH HOH . F 3 HOH D 41 641 92 HOH HOH . F 3 HOH D 42 642 93 HOH HOH . F 3 HOH D 43 643 94 HOH HOH . F 3 HOH D 44 644 95 HOH HOH . F 3 HOH D 45 645 96 HOH HOH . F 3 HOH D 46 646 97 HOH HOH . F 3 HOH D 47 647 98 HOH HOH . F 3 HOH D 48 648 99 HOH HOH . F 3 HOH D 49 649 102 HOH HOH . F 3 HOH D 50 650 103 HOH HOH . F 3 HOH D 51 651 104 HOH HOH . F 3 HOH D 52 652 105 HOH HOH . F 3 HOH D 53 653 108 HOH HOH . F 3 HOH D 54 654 109 HOH HOH . F 3 HOH D 55 655 110 HOH HOH . F 3 HOH D 56 656 117 HOH HOH . F 3 HOH D 57 657 118 HOH HOH . F 3 HOH D 58 658 119 HOH HOH . F 3 HOH D 59 659 120 HOH HOH . F 3 HOH D 60 660 121 HOH HOH . F 3 HOH D 61 661 122 HOH HOH . F 3 HOH D 62 662 123 HOH HOH . F 3 HOH D 63 663 124 HOH HOH . F 3 HOH D 64 664 125 HOH HOH . F 3 HOH D 65 665 126 HOH HOH . F 3 HOH D 66 666 135 HOH HOH . F 3 HOH D 67 667 144 HOH HOH . F 3 HOH D 68 668 145 HOH HOH . F 3 HOH D 69 669 149 HOH HOH . F 3 HOH D 70 670 150 HOH HOH . F 3 HOH D 71 671 153 HOH HOH . F 3 HOH D 72 672 160 HOH HOH . F 3 HOH D 73 673 164 HOH HOH . F 3 HOH D 74 674 166 HOH HOH . F 3 HOH D 75 675 173 HOH HOH . F 3 HOH D 76 676 177 HOH HOH . F 3 HOH D 77 677 178 HOH HOH . F 3 HOH D 78 678 179 HOH HOH . F 3 HOH D 79 679 182 HOH HOH . F 3 HOH D 80 680 184 HOH HOH . F 3 HOH D 81 681 188 HOH HOH . F 3 HOH D 82 682 189 HOH HOH . F 3 HOH D 83 683 191 HOH HOH . F 3 HOH D 84 684 192 HOH HOH . F 3 HOH D 85 685 193 HOH HOH . F 3 HOH D 86 686 195 HOH HOH . F 3 HOH D 87 687 199 HOH HOH . F 3 HOH D 88 688 201 HOH HOH . F 3 HOH D 89 689 202 HOH HOH . F 3 HOH D 90 690 205 HOH HOH . F 3 HOH D 91 691 206 HOH HOH . F 3 HOH D 92 692 207 HOH HOH . F 3 HOH D 93 693 208 HOH HOH . F 3 HOH D 94 694 215 HOH HOH . F 3 HOH D 95 695 216 HOH HOH . F 3 HOH D 96 696 217 HOH HOH . F 3 HOH D 97 697 220 HOH HOH . F 3 HOH D 98 698 221 HOH HOH . F 3 HOH D 99 699 223 HOH HOH . F 3 HOH D 100 700 226 HOH HOH . F 3 HOH D 101 701 229 HOH HOH . F 3 HOH D 102 702 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 29.585 34.54 -17.368 1 13.15 ? N1 FMN 501 D 1 HETATM 2 C C2 FMN . . . D 2 30.42 33.647 -17.994 1 14.31 ? C2 FMN 501 D 1 HETATM 3 O O2 FMN . . . D 2 30.771 33.832 -19.165 1 14.89 ? O2 FMN 501 D 1 HETATM 4 N N3 FMN . . . D 2 30.864 32.524 -17.327 1 14.04 ? N3 FMN 501 D 1 HETATM 5 C C4 FMN . . . D 2 30.522 32.264 -16.021 1 13.76 ? C4 FMN 501 D 1 HETATM 6 O O4 FMN . . . D 2 30.937 31.231 -15.478 1 15.05 ? O4 FMN 501 D 1 HETATM 7 C C4A FMN . . . D 2 29.681 33.167 -15.369 1 13.05 ? C4A FMN 501 D 1 HETATM 8 N N5 FMN . . . D 2 29.318 32.951 -14.058 1 12.72 ? N5 FMN 501 D 1 HETATM 9 C C5A FMN . . . D 2 28.461 33.844 -13.445 1 11.9 ? C5A FMN 501 D 1 HETATM 10 C C6 FMN . . . D 2 28.089 33.611 -12.127 1 12.74 ? C6 FMN 501 D 1 HETATM 11 C C7 FMN . . . D 2 27.221 34.486 -11.477 1 12.51 ? C7 FMN 501 D 1 HETATM 12 C C7M FMN . . . D 2 26.835 34.178 -10.061 1 12.96 ? C7M FMN 501 D 1 HETATM 13 C C8 FMN . . . D 2 26.741 35.611 -12.155 1 12.66 ? C8 FMN 501 D 1 HETATM 14 C C8M FMN . . . D 2 25.816 36.577 -11.48 1 14.12 ? C8M FMN 501 D 1 HETATM 15 C C9 FMN . . . D 2 27.125 35.851 -13.469 1 12.81 ? C9 FMN 501 D 1 HETATM 16 C C9A FMN . . . D 2 27.989 34.975 -14.127 1 12.64 ? C9A FMN 501 D 1 HETATM 17 N N10 FMN . . . D 2 28.404 35.197 -15.442 1 12.58 ? N10 FMN 501 D 1 HETATM 18 C C10 FMN . . . D 2 29.223 34.29 -16.066 1 12.98 ? C10 FMN 501 D 1 HETATM 19 C C1' FMN . . . D 2 27.87 36.341 -16.242 1 13.53 ? C1' FMN 501 D 1 HETATM 20 C C2' FMN . . . D 2 28.627 37.645 -16.234 1 12.94 ? C2' FMN 501 D 1 HETATM 21 O O2' FMN . . . D 2 29.03 37.948 -14.912 1 13.41 ? O2' FMN 501 D 1 HETATM 22 C C3' FMN . . . D 2 27.71 38.756 -16.769 1 13.75 ? C3' FMN 501 D 1 HETATM 23 O O3' FMN . . . D 2 26.505 38.771 -16.034 1 14.48 ? O3' FMN 501 D 1 HETATM 24 C C4' FMN . . . D 2 27.387 38.618 -18.263 1 13.96 ? C4' FMN 501 D 1 HETATM 25 O O4' FMN . . . D 2 28.594 38.756 -18.989 1 14.87 ? O4' FMN 501 D 1 HETATM 26 C C5' FMN . . . D 2 26.346 39.63 -18.752 1 15.4 ? C5' FMN 501 D 1 HETATM 27 O O5' FMN . . . D 2 26.645 40.926 -18.278 1 16.97 ? O5' FMN 501 D 1 HETATM 28 P P FMN . . . D 2 27.48 41.937 -19.189 1 17.08 ? P FMN 501 D 1 HETATM 29 O O1P FMN . . . D 2 27.631 43.191 -18.364 1 18.39 ? O1P FMN 501 D 1 HETATM 30 O O2P FMN . . . D 2 28.81 41.276 -19.48 1 16.66 ? O2P FMN 501 D 1 HETATM 31 O O3P FMN . . . D 2 26.733 42.208 -20.482 1 18.87 ? O3P FMN 501 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 404 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #