data_4EEU # _model_server_result.job_id x1jed_TvND2_ANJUixRpoQ _model_server_result.datetime_utc '2024-11-28 13:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eeu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4EEU # _exptl.entry_id 4EEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EEU _cell.length_a 40.967 _cell.length_b 40.967 _cell.length_c 130.554 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4EEU _atom_sites.fract_transf_matrix[1][1] 0.02441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 501 547 FMN FMN . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 11 HOH HOH . C 3 HOH A 11 611 12 HOH HOH . C 3 HOH A 12 612 13 HOH HOH . C 3 HOH A 13 613 14 HOH HOH . C 3 HOH A 14 614 15 HOH HOH . C 3 HOH A 15 615 16 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 18 HOH HOH . C 3 HOH A 18 618 19 HOH HOH . C 3 HOH A 19 619 20 HOH HOH . C 3 HOH A 20 620 21 HOH HOH . C 3 HOH A 21 621 22 HOH HOH . C 3 HOH A 22 622 23 HOH HOH . C 3 HOH A 23 623 24 HOH HOH . C 3 HOH A 24 624 25 HOH HOH . C 3 HOH A 25 625 26 HOH HOH . C 3 HOH A 26 626 27 HOH HOH . C 3 HOH A 27 627 28 HOH HOH . C 3 HOH A 28 628 29 HOH HOH . C 3 HOH A 29 629 30 HOH HOH . C 3 HOH A 30 630 31 HOH HOH . C 3 HOH A 31 631 32 HOH HOH . C 3 HOH A 32 632 34 HOH HOH . C 3 HOH A 33 633 35 HOH HOH . C 3 HOH A 34 634 36 HOH HOH . C 3 HOH A 35 635 37 HOH HOH . C 3 HOH A 36 636 38 HOH HOH . C 3 HOH A 37 637 39 HOH HOH . C 3 HOH A 38 638 40 HOH HOH . C 3 HOH A 39 639 41 HOH HOH . C 3 HOH A 40 640 42 HOH HOH . C 3 HOH A 41 641 43 HOH HOH . C 3 HOH A 42 642 51 HOH HOH . C 3 HOH A 43 643 52 HOH HOH . C 3 HOH A 44 644 53 HOH HOH . C 3 HOH A 45 645 54 HOH HOH . C 3 HOH A 46 646 55 HOH HOH . C 3 HOH A 47 647 56 HOH HOH . C 3 HOH A 48 648 57 HOH HOH . C 3 HOH A 49 649 58 HOH HOH . C 3 HOH A 50 650 59 HOH HOH . C 3 HOH A 51 651 60 HOH HOH . C 3 HOH A 52 652 61 HOH HOH . C 3 HOH A 53 653 62 HOH HOH . C 3 HOH A 54 654 63 HOH HOH . C 3 HOH A 55 655 64 HOH HOH . C 3 HOH A 56 656 65 HOH HOH . C 3 HOH A 57 657 66 HOH HOH . C 3 HOH A 58 658 67 HOH HOH . C 3 HOH A 59 659 68 HOH HOH . C 3 HOH A 60 660 69 HOH HOH . C 3 HOH A 61 661 70 HOH HOH . C 3 HOH A 62 662 73 HOH HOH . C 3 HOH A 63 663 74 HOH HOH . C 3 HOH A 64 664 75 HOH HOH . C 3 HOH A 65 665 76 HOH HOH . C 3 HOH A 66 666 77 HOH HOH . C 3 HOH A 67 667 78 HOH HOH . C 3 HOH A 68 668 79 HOH HOH . C 3 HOH A 69 669 80 HOH HOH . C 3 HOH A 70 670 81 HOH HOH . C 3 HOH A 71 671 82 HOH HOH . C 3 HOH A 72 672 83 HOH HOH . C 3 HOH A 73 673 84 HOH HOH . C 3 HOH A 74 674 85 HOH HOH . C 3 HOH A 75 675 86 HOH HOH . C 3 HOH A 76 676 87 HOH HOH . C 3 HOH A 77 677 88 HOH HOH . C 3 HOH A 78 678 89 HOH HOH . C 3 HOH A 79 679 90 HOH HOH . C 3 HOH A 80 680 91 HOH HOH . C 3 HOH A 81 681 92 HOH HOH . C 3 HOH A 82 682 93 HOH HOH . C 3 HOH A 83 683 94 HOH HOH . C 3 HOH A 84 684 95 HOH HOH . C 3 HOH A 85 685 96 HOH HOH . C 3 HOH A 86 686 97 HOH HOH . C 3 HOH A 87 687 98 HOH HOH . C 3 HOH A 88 688 99 HOH HOH . C 3 HOH A 89 689 100 HOH HOH . C 3 HOH A 90 690 101 HOH HOH . C 3 HOH A 91 691 102 HOH HOH . C 3 HOH A 92 692 103 HOH HOH . C 3 HOH A 93 693 104 HOH HOH . C 3 HOH A 94 694 105 HOH HOH . C 3 HOH A 95 695 106 HOH HOH . C 3 HOH A 96 696 107 HOH HOH . C 3 HOH A 97 697 108 HOH HOH . C 3 HOH A 98 698 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -1.656 7.304 -19.907 1 13.08 ? N1 FMN 501 A 1 HETATM 2 C C2 FMN . . . B 2 -1.88 7.948 -18.725 1 14.69 ? C2 FMN 501 A 1 HETATM 3 O O2 FMN . . . B 2 -2.888 8.647 -18.579 1 16.87 ? O2 FMN 501 A 1 HETATM 4 N N3 FMN . . . B 2 -0.984 7.813 -17.688 1 15.08 ? N3 FMN 501 A 1 HETATM 5 C C4 FMN . . . B 2 0.16 7.065 -17.774 1 13.24 ? C4 FMN 501 A 1 HETATM 6 O O4 FMN . . . B 2 0.936 7.007 -16.804 1 16.11 ? O4 FMN 501 A 1 HETATM 7 C C4A FMN . . . B 2 0.384 6.388 -18.972 1 13.25 ? C4A FMN 501 A 1 HETATM 8 N N5 FMN . . . B 2 1.502 5.602 -19.122 1 14.61 ? N5 FMN 501 A 1 HETATM 9 C C5A FMN . . . B 2 1.697 4.986 -20.345 1 12.97 ? C5A FMN 501 A 1 HETATM 10 C C6 FMN . . . B 2 2.839 4.206 -20.506 1 15.2 ? C6 FMN 501 A 1 HETATM 11 C C7 FMN . . . B 2 3.132 3.561 -21.689 1 16.1 ? C7 FMN 501 A 1 HETATM 12 C C7M FMN . . . B 2 4.389 2.729 -21.804 1 15.6 ? C7M FMN 501 A 1 HETATM 13 C C8 FMN . . . B 2 2.255 3.696 -22.759 1 15.13 ? C8 FMN 501 A 1 HETATM 14 C C8M FMN . . . B 2 2.543 3.002 -24.07 1 16.45 ? C8M FMN 501 A 1 HETATM 15 C C9 FMN . . . B 2 1.105 4.492 -22.625 1 15.33 ? C9 FMN 501 A 1 HETATM 16 C C9A FMN . . . B 2 0.823 5.144 -21.421 1 13.96 ? C9A FMN 501 A 1 HETATM 17 N N10 FMN . . . B 2 -0.326 5.921 -21.25 1 13.98 ? N10 FMN 501 A 1 HETATM 18 C C10 FMN . . . B 2 -0.515 6.555 -20.032 1 13.59 ? C10 FMN 501 A 1 HETATM 19 C C1' FMN . . . B 2 -1.273 6.202 -22.367 1 13.82 ? C1' FMN 501 A 1 HETATM 20 C C2' FMN . . . B 2 -2.429 5.259 -22.581 1 14.52 ? C2' FMN 501 A 1 HETATM 21 O O2' FMN . . . B 2 -1.966 3.951 -22.321 1 14.63 ? O2' FMN 501 A 1 HETATM 22 C C3' FMN . . . B 2 -2.9 5.361 -24.02 1 14.21 ? C3' FMN 501 A 1 HETATM 23 O O3' FMN . . . B 2 -1.815 5.06 -24.913 1 15.01 ? O3' FMN 501 A 1 HETATM 24 C C4' FMN . . . B 2 -3.473 6.749 -24.348 1 15.07 ? C4' FMN 501 A 1 HETATM 25 O O4' FMN . . . B 2 -4.593 7.004 -23.506 1 15.73 ? O4' FMN 501 A 1 HETATM 26 C C5' FMN . . . B 2 -3.852 6.953 -25.823 1 17.06 ? C5' FMN 501 A 1 HETATM 27 O O5' FMN . . . B 2 -4.555 5.832 -26.302 1 18.79 ? O5' FMN 501 A 1 HETATM 28 P P FMN . . . B 2 -6.154 5.798 -26.279 1 20.1 ? P FMN 501 A 1 HETATM 29 O O1P FMN . . . B 2 -6.468 4.512 -27.014 1 20.49 ? O1P FMN 501 A 1 HETATM 30 O O2P FMN . . . B 2 -6.601 5.824 -24.832 1 20.66 ? O2P FMN 501 A 1 HETATM 31 O O3P FMN . . . B 2 -6.718 6.996 -27.014 1 23.86 ? O3P FMN 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 421 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #