data_4EFH
#
_model_server_result.job_id            z1NZjTYpAoJr3o3l1hITYw 
_model_server_result.datetime_utc      '2024-11-27 15:48:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4efh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    4EFH 
#
_exptl.entry_id    4EFH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EFH 
_cell.length_a            53.006 
_cell.length_b            71.791 
_cell.length_c            126.089 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EFH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 271 A SER 271 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? 
metalc ? metalc2 C CA CA . A CA 401 1_555 E O1B ADP . A ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc3 C CA CA . A CA 401 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 C CA CA . A CA 401 1_555 F O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc5 C CA CA . A CA 401 1_555 F O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc6 C CA CA . A CA 401 1_555 F O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc7 C CA CA . A CA 401 1_555 F O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4EFH 
_atom_sites.fract_transf_matrix[1][1]    0.018866 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007931 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 401 401 CA CA . 
D 3 CA A 1 402 402 CA CA . 
E 4 ADP A 1 403 403 ADP ADP . 
F 5 HOH A 1 501 1 HOH HOH . 
F 5 HOH A 2 502 2 HOH HOH . 
F 5 HOH A 3 503 3 HOH HOH . 
F 5 HOH A 4 504 4 HOH HOH . 
F 5 HOH A 5 505 5 HOH HOH . 
F 5 HOH A 6 506 6 HOH HOH . 
F 5 HOH A 7 507 7 HOH HOH . 
F 5 HOH A 8 508 8 HOH HOH . 
F 5 HOH A 9 509 9 HOH HOH . 
F 5 HOH A 10 510 10 HOH HOH . 
F 5 HOH A 11 511 11 HOH HOH . 
F 5 HOH A 12 512 12 HOH HOH . 
F 5 HOH A 13 513 13 HOH HOH . 
F 5 HOH A 14 514 14 HOH HOH . 
F 5 HOH A 15 515 15 HOH HOH . 
F 5 HOH A 16 516 16 HOH HOH . 
F 5 HOH A 17 517 17 HOH HOH . 
F 5 HOH A 18 518 18 HOH HOH . 
F 5 HOH A 19 519 19 HOH HOH . 
F 5 HOH A 20 520 21 HOH HOH . 
F 5 HOH A 21 521 22 HOH HOH . 
F 5 HOH A 22 522 23 HOH HOH . 
F 5 HOH A 23 523 24 HOH HOH . 
F 5 HOH A 24 524 25 HOH HOH . 
F 5 HOH A 25 525 26 HOH HOH . 
F 5 HOH A 26 526 27 HOH HOH . 
F 5 HOH A 27 527 29 HOH HOH . 
F 5 HOH A 28 528 30 HOH HOH . 
F 5 HOH A 29 529 31 HOH HOH . 
F 5 HOH A 30 530 32 HOH HOH . 
F 5 HOH A 31 531 33 HOH HOH . 
F 5 HOH A 32 532 34 HOH HOH . 
F 5 HOH A 33 533 35 HOH HOH . 
F 5 HOH A 34 534 36 HOH HOH . 
F 5 HOH A 35 535 37 HOH HOH . 
F 5 HOH A 36 536 38 HOH HOH . 
F 5 HOH A 37 537 39 HOH HOH . 
F 5 HOH A 38 538 40 HOH HOH . 
F 5 HOH A 39 539 41 HOH HOH . 
F 5 HOH A 40 540 42 HOH HOH . 
F 5 HOH A 41 541 44 HOH HOH . 
F 5 HOH A 42 542 45 HOH HOH . 
F 5 HOH A 43 543 46 HOH HOH . 
F 5 HOH A 44 544 47 HOH HOH . 
F 5 HOH A 45 545 49 HOH HOH . 
F 5 HOH A 46 546 50 HOH HOH . 
F 5 HOH A 47 547 51 HOH HOH . 
F 5 HOH A 48 548 52 HOH HOH . 
F 5 HOH A 49 549 53 HOH HOH . 
F 5 HOH A 50 550 54 HOH HOH . 
F 5 HOH A 51 551 55 HOH HOH . 
F 5 HOH A 52 552 56 HOH HOH . 
F 5 HOH A 53 553 57 HOH HOH . 
F 5 HOH A 54 554 58 HOH HOH . 
F 5 HOH A 55 555 59 HOH HOH . 
F 5 HOH A 56 556 60 HOH HOH . 
F 5 HOH A 57 557 61 HOH HOH . 
F 5 HOH A 58 558 63 HOH HOH . 
F 5 HOH A 59 559 64 HOH HOH . 
F 5 HOH A 60 560 66 HOH HOH . 
F 5 HOH A 61 561 67 HOH HOH . 
F 5 HOH A 62 562 68 HOH HOH . 
F 5 HOH A 63 563 69 HOH HOH . 
F 5 HOH A 64 564 70 HOH HOH . 
F 5 HOH A 65 565 71 HOH HOH . 
F 5 HOH A 66 566 72 HOH HOH . 
F 5 HOH A 67 567 74 HOH HOH . 
F 5 HOH A 68 568 75 HOH HOH . 
F 5 HOH A 69 569 76 HOH HOH . 
F 5 HOH A 70 570 77 HOH HOH . 
F 5 HOH A 71 571 78 HOH HOH . 
F 5 HOH A 72 572 79 HOH HOH . 
F 5 HOH A 73 573 80 HOH HOH . 
F 5 HOH A 74 574 83 HOH HOH . 
F 5 HOH A 75 575 84 HOH HOH . 
F 5 HOH A 76 576 85 HOH HOH . 
F 5 HOH A 77 577 86 HOH HOH . 
F 5 HOH A 78 578 87 HOH HOH . 
F 5 HOH A 79 579 88 HOH HOH . 
F 5 HOH A 80 580 89 HOH HOH . 
F 5 HOH A 81 581 90 HOH HOH . 
F 5 HOH A 82 582 91 HOH HOH . 
F 5 HOH A 83 583 92 HOH HOH . 
F 5 HOH A 84 584 93 HOH HOH . 
F 5 HOH A 85 585 94 HOH HOH . 
F 5 HOH A 86 586 95 HOH HOH . 
F 5 HOH A 87 587 96 HOH HOH . 
F 5 HOH A 88 588 97 HOH HOH . 
F 5 HOH A 89 589 98 HOH HOH . 
F 5 HOH A 90 590 99 HOH HOH . 
F 5 HOH A 91 591 100 HOH HOH . 
F 5 HOH A 92 592 101 HOH HOH . 
F 5 HOH A 93 593 102 HOH HOH . 
F 5 HOH A 94 594 103 HOH HOH . 
F 5 HOH A 95 595 104 HOH HOH . 
F 5 HOH A 96 596 107 HOH HOH . 
F 5 HOH A 97 597 108 HOH HOH . 
F 5 HOH A 98 598 110 HOH HOH . 
F 5 HOH A 99 599 111 HOH HOH . 
F 5 HOH A 100 600 112 HOH HOH . 
F 5 HOH A 101 601 113 HOH HOH . 
F 5 HOH A 102 602 114 HOH HOH . 
F 5 HOH A 103 603 115 HOH HOH . 
F 5 HOH A 104 604 116 HOH HOH . 
F 5 HOH A 105 605 117 HOH HOH . 
F 5 HOH A 106 606 118 HOH HOH . 
F 5 HOH A 107 607 119 HOH HOH . 
F 5 HOH A 108 608 120 HOH HOH . 
F 5 HOH A 109 609 121 HOH HOH . 
F 5 HOH A 110 610 122 HOH HOH . 
F 5 HOH A 111 611 123 HOH HOH . 
F 5 HOH A 112 612 124 HOH HOH . 
F 5 HOH A 113 613 125 HOH HOH . 
F 5 HOH A 114 614 126 HOH HOH . 
F 5 HOH A 115 615 127 HOH HOH . 
F 5 HOH A 116 616 128 HOH HOH . 
F 5 HOH A 117 617 130 HOH HOH . 
F 5 HOH A 118 618 131 HOH HOH . 
F 5 HOH A 119 619 132 HOH HOH . 
F 5 HOH A 120 620 133 HOH HOH . 
F 5 HOH A 121 621 134 HOH HOH . 
F 5 HOH A 122 622 135 HOH HOH . 
G 5 HOH B 1 201 20 HOH HOH . 
G 5 HOH B 2 202 28 HOH HOH . 
G 5 HOH B 3 203 43 HOH HOH . 
G 5 HOH B 4 204 48 HOH HOH . 
G 5 HOH B 5 205 62 HOH HOH . 
G 5 HOH B 6 206 65 HOH HOH . 
G 5 HOH B 7 207 73 HOH HOH . 
G 5 HOH B 8 208 81 HOH HOH . 
G 5 HOH B 9 209 82 HOH HOH . 
G 5 HOH B 10 210 106 HOH HOH . 
G 5 HOH B 11 211 109 HOH HOH . 
G 5 HOH B 12 212 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . E 4 -0.889 15.155 -22.514 1 21.15 ? PB ADP 403 A 1 
HETATM 2 O O1B ADP . . . E 4 -0.709 14.719 -23.904 1 24.79 ? O1B ADP 403 A 1 
HETATM 3 O O2B ADP . . . E 4 0.451 15.69 -21.985 1 24.84 ? O2B ADP 403 A 1 
HETATM 4 O O3B ADP . . . E 4 -2 16.226 -22.421 1 15.51 ? O3B ADP 403 A 1 
HETATM 5 P PA ADP . . . E 4 -1.335 12.334 -21.56 1 20.95 ? PA ADP 403 A 1 
HETATM 6 O O1A ADP . . . E 4 -2.215 11.809 -22.633 1 17.1 ? O1A ADP 403 A 1 
HETATM 7 O O2A ADP . . . E 4 0.105 11.849 -21.739 1 23.76 ? O2A ADP 403 A 1 
HETATM 8 O O3A ADP . . . E 4 -1.345 13.934 -21.587 1 22.62 ? O3A ADP 403 A 1 
HETATM 9 O O5' ADP . . . E 4 -1.862 11.882 -20.152 1 22.52 ? O5' ADP 403 A 1 
HETATM 10 C C5' ADP . . . E 4 -1.284 12.468 -18.969 1 22.92 ? C5' ADP 403 A 1 
HETATM 11 C C4' ADP . . . E 4 -2.351 12.481 -17.911 1 24.04 ? C4' ADP 403 A 1 
HETATM 12 O O4' ADP . . . E 4 -2.902 11.152 -17.792 1 23.54 ? O4' ADP 403 A 1 
HETATM 13 C C3' ADP . . . E 4 -1.887 12.886 -16.513 1 24.69 ? C3' ADP 403 A 1 
HETATM 14 O O3' ADP . . . E 4 -2.822 13.788 -15.931 1 25.26 ? O3' ADP 403 A 1 
HETATM 15 C C2' ADP . . . E 4 -1.77 11.542 -15.788 1 23.97 ? C2' ADP 403 A 1 
HETATM 16 O O2' ADP . . . E 4 -1.906 11.607 -14.375 1 24.68 ? O2' ADP 403 A 1 
HETATM 17 C C1' ADP . . . E 4 -2.901 10.752 -16.441 1 23.73 ? C1' ADP 403 A 1 
HETATM 18 N N9 ADP . . . E 4 -2.723 9.304 -16.408 1 23.41 ? N9 ADP 403 A 1 
HETATM 19 C C8 ADP . . . E 4 -1.611 8.601 -16.799 1 23.9 ? C8 ADP 403 A 1 
HETATM 20 N N7 ADP . . . E 4 -1.71 7.306 -16.63 1 26.6 ? N7 ADP 403 A 1 
HETATM 21 C C5 ADP . . . E 4 -2.979 7.141 -16.092 1 28.17 ? C5 ADP 403 A 1 
HETATM 22 C C6 ADP . . . E 4 -3.688 6 -15.668 1 29.57 ? C6 ADP 403 A 1 
HETATM 23 N N6 ADP . . . E 4 -3.199 4.761 -15.742 1 27.57 ? N6 ADP 403 A 1 
HETATM 24 N N1 ADP . . . E 4 -4.94 6.182 -15.179 1 30.97 ? N1 ADP 403 A 1 
HETATM 25 C C2 ADP . . . E 4 -5.439 7.426 -15.124 1 28.46 ? C2 ADP 403 A 1 
HETATM 26 N N3 ADP . . . E 4 -4.86 8.577 -15.486 1 26.23 ? N3 ADP 403 A 1 
HETATM 27 C C4 ADP . . . E 4 -3.619 8.365 -15.961 1 25.12 ? C4 ADP 403 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#