data_4EFS # _model_server_result.job_id gTR9BiEDUPIUd6Lj-EktYA _model_server_result.datetime_utc '2024-11-13 03:00:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4efs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":313}' # _entry.id 4EFS # _exptl.entry_id 4EFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EFS _cell.length_a 68.97 _cell.length_b 63.19 _cell.length_c 37.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A OD2 ASP 20 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc3 A O ASP 54 A ASP 158 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc4 A NE2 HIS 64 A HIS 168 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc5 A OD1 ASP 66 A ASP 170 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc6 A OD1 ASP 71 A ASP 175 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc7 A O GLY 72 A GLY 176 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 A O GLY 74 A GLY 178 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc9 A O ILE 76 A ILE 180 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc10 A NE2 HIS 79 A HIS 183 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc11 A O GLY 86 A GLY 190 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 A O GLY 88 A GLY 192 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc13 A OD1 ASP 90 A ASP 194 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc14 A ND1 HIS 92 A HIS 196 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc15 A OD2 ASP 94 A ASP 198 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc16 A O GLU 95 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc17 A OE2 GLU 95 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc18 A O GLU 97 A GLU 201 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc19 A OE2 GLU 97 A GLU 201 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc20 A NE2 HIS 114 A HIS 218 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc21 A NE2 HIS 118 A HIS 222 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc22 A NE2 HIS 124 A HIS 228 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc23 B ZN ZN . A ZN 301 1_555 G O4 E37 . A E37 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc24 B ZN ZN . A ZN 301 1_555 G O4E E37 . A E37 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc25 D CA CA . A CA 303 1_555 P O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc26 D CA CA . A CA 303 1_555 P O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc27 E CA CA . A CA 304 1_555 P O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc28 E CA CA . A CA 304 1_555 P O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 121 n n C1 C2 EDO sing 122 n n C1 H11 EDO sing 123 n n C1 H12 EDO sing 124 n n O1 HO1 EDO sing 125 n n C2 O2 EDO sing 126 n n C2 H21 EDO sing 127 n n C2 H22 EDO sing 128 n n O2 HO2 EDO sing 129 n n # _atom_sites.entry_id 4EFS _atom_sites.fract_transf_matrix[1][1] 0.014499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 500 ZN ZN . C 2 ZN A 1 302 501 ZN ZN . D 3 CA A 1 303 502 CA CA . E 3 CA A 1 304 503 CA CA . F 3 CA A 1 305 504 CA CA . G 4 E37 A 1 306 1 E37 E37 . H 5 GOL A 1 307 1 GOL GOL . I 6 EDO A 1 308 2 EDO EDO . J 7 PGR A 1 309 3 PGR PGR . K 8 PGO A 1 310 4 PGO PGO . L 8 PGO A 1 311 5 PGO PGO . M 9 IMD A 1 312 6 IMD IMD . N 6 EDO A 1 313 7 EDO EDO . O 8 PGO A 1 314 8 PGO PGO . P 10 HOH A 1 401 1 HOH HOH . P 10 HOH A 2 402 2 HOH HOH . P 10 HOH A 3 403 3 HOH HOH . P 10 HOH A 4 404 4 HOH HOH . P 10 HOH A 5 405 5 HOH HOH . P 10 HOH A 6 406 6 HOH HOH . P 10 HOH A 7 407 7 HOH HOH . P 10 HOH A 8 408 8 HOH HOH . P 10 HOH A 9 409 9 HOH HOH . P 10 HOH A 10 410 10 HOH HOH . P 10 HOH A 11 411 11 HOH HOH . P 10 HOH A 12 412 12 HOH HOH . P 10 HOH A 13 413 13 HOH HOH . P 10 HOH A 14 414 14 HOH HOH . P 10 HOH A 15 415 15 HOH HOH . P 10 HOH A 16 416 16 HOH HOH . P 10 HOH A 17 417 17 HOH HOH . P 10 HOH A 18 418 18 HOH HOH . P 10 HOH A 19 419 19 HOH HOH . P 10 HOH A 20 420 20 HOH HOH . P 10 HOH A 21 421 21 HOH HOH . P 10 HOH A 22 422 22 HOH HOH . P 10 HOH A 23 423 23 HOH HOH . P 10 HOH A 24 424 24 HOH HOH . P 10 HOH A 25 425 25 HOH HOH . P 10 HOH A 26 426 26 HOH HOH . P 10 HOH A 27 427 27 HOH HOH . P 10 HOH A 28 428 28 HOH HOH . P 10 HOH A 29 429 29 HOH HOH . P 10 HOH A 30 430 30 HOH HOH . P 10 HOH A 31 431 31 HOH HOH . P 10 HOH A 32 432 32 HOH HOH . P 10 HOH A 33 433 33 HOH HOH . P 10 HOH A 34 434 34 HOH HOH . P 10 HOH A 35 435 35 HOH HOH . P 10 HOH A 36 436 36 HOH HOH . P 10 HOH A 37 437 37 HOH HOH . P 10 HOH A 38 438 38 HOH HOH . P 10 HOH A 39 439 39 HOH HOH . P 10 HOH A 40 440 40 HOH HOH . P 10 HOH A 41 441 41 HOH HOH . P 10 HOH A 42 442 42 HOH HOH . P 10 HOH A 43 443 43 HOH HOH . P 10 HOH A 44 444 44 HOH HOH . P 10 HOH A 45 445 45 HOH HOH . P 10 HOH A 46 446 46 HOH HOH . P 10 HOH A 47 447 47 HOH HOH . P 10 HOH A 48 448 48 HOH HOH . P 10 HOH A 49 449 49 HOH HOH . P 10 HOH A 50 450 50 HOH HOH . P 10 HOH A 51 451 51 HOH HOH . P 10 HOH A 52 452 52 HOH HOH . P 10 HOH A 53 453 53 HOH HOH . P 10 HOH A 54 454 54 HOH HOH . P 10 HOH A 55 455 55 HOH HOH . P 10 HOH A 56 456 56 HOH HOH . P 10 HOH A 57 457 57 HOH HOH . P 10 HOH A 58 458 58 HOH HOH . P 10 HOH A 59 459 59 HOH HOH . P 10 HOH A 60 460 60 HOH HOH . P 10 HOH A 61 461 61 HOH HOH . P 10 HOH A 62 462 62 HOH HOH . P 10 HOH A 63 463 63 HOH HOH . P 10 HOH A 64 464 64 HOH HOH . P 10 HOH A 65 465 65 HOH HOH . P 10 HOH A 66 466 66 HOH HOH . P 10 HOH A 67 467 67 HOH HOH . P 10 HOH A 68 468 68 HOH HOH . P 10 HOH A 69 469 69 HOH HOH . P 10 HOH A 70 470 70 HOH HOH . P 10 HOH A 71 471 71 HOH HOH . P 10 HOH A 72 472 72 HOH HOH . P 10 HOH A 73 473 73 HOH HOH . P 10 HOH A 74 474 74 HOH HOH . P 10 HOH A 75 475 75 HOH HOH . P 10 HOH A 76 476 76 HOH HOH . P 10 HOH A 77 477 77 HOH HOH . P 10 HOH A 78 478 78 HOH HOH . P 10 HOH A 79 479 79 HOH HOH . P 10 HOH A 80 480 80 HOH HOH . P 10 HOH A 81 481 81 HOH HOH . P 10 HOH A 82 482 82 HOH HOH . P 10 HOH A 83 483 83 HOH HOH . P 10 HOH A 84 484 84 HOH HOH . P 10 HOH A 85 485 85 HOH HOH . P 10 HOH A 86 486 86 HOH HOH . P 10 HOH A 87 487 87 HOH HOH . P 10 HOH A 88 488 88 HOH HOH . P 10 HOH A 89 489 89 HOH HOH . P 10 HOH A 90 490 90 HOH HOH . P 10 HOH A 91 491 91 HOH HOH . P 10 HOH A 92 492 92 HOH HOH . P 10 HOH A 93 493 93 HOH HOH . P 10 HOH A 94 494 94 HOH HOH . P 10 HOH A 95 495 95 HOH HOH . P 10 HOH A 96 496 96 HOH HOH . P 10 HOH A 97 497 97 HOH HOH . P 10 HOH A 98 498 98 HOH HOH . P 10 HOH A 99 499 99 HOH HOH . P 10 HOH A 100 500 100 HOH HOH . P 10 HOH A 101 501 101 HOH HOH . P 10 HOH A 102 502 102 HOH HOH . P 10 HOH A 103 503 103 HOH HOH . P 10 HOH A 104 504 104 HOH HOH . P 10 HOH A 105 505 105 HOH HOH . P 10 HOH A 106 506 106 HOH HOH . P 10 HOH A 107 507 107 HOH HOH . P 10 HOH A 108 508 108 HOH HOH . P 10 HOH A 109 509 109 HOH HOH . P 10 HOH A 110 510 110 HOH HOH . P 10 HOH A 111 511 111 HOH HOH . P 10 HOH A 112 512 112 HOH HOH . P 10 HOH A 113 513 113 HOH HOH . P 10 HOH A 114 514 114 HOH HOH . P 10 HOH A 115 515 115 HOH HOH . P 10 HOH A 116 516 116 HOH HOH . P 10 HOH A 117 517 117 HOH HOH . P 10 HOH A 118 518 118 HOH HOH . P 10 HOH A 119 519 119 HOH HOH . P 10 HOH A 120 520 120 HOH HOH . P 10 HOH A 121 521 121 HOH HOH . P 10 HOH A 122 522 122 HOH HOH . P 10 HOH A 123 523 123 HOH HOH . P 10 HOH A 124 524 124 HOH HOH . P 10 HOH A 125 525 125 HOH HOH . P 10 HOH A 126 526 126 HOH HOH . P 10 HOH A 127 527 127 HOH HOH . P 10 HOH A 128 528 128 HOH HOH . P 10 HOH A 129 529 129 HOH HOH . P 10 HOH A 130 530 130 HOH HOH . P 10 HOH A 131 531 131 HOH HOH . P 10 HOH A 132 532 132 HOH HOH . P 10 HOH A 133 533 133 HOH HOH . P 10 HOH A 134 534 134 HOH HOH . P 10 HOH A 135 535 135 HOH HOH . P 10 HOH A 136 536 136 HOH HOH . P 10 HOH A 137 537 137 HOH HOH . P 10 HOH A 138 538 138 HOH HOH . P 10 HOH A 139 539 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 6 -22.485 -5.934 8.102 1 43.25 ? C1 EDO 313 A 1 HETATM 2 O O1 EDO . . . N 6 -23.226 -5.788 9.321 1 45.49 ? O1 EDO 313 A 1 HETATM 3 C C2 EDO . . . N 6 -22.869 -7.336 7.719 1 34.25 ? C2 EDO 313 A 1 HETATM 4 O O2 EDO . . . N 6 -23.646 -7.762 8.831 1 35.19 ? O2 EDO 313 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #