data_4EG4
#
_model_server_result.job_id            5QdqdsUCumyX5OvZ-sK54A 
_model_server_result.datetime_utc      '2024-11-24 04:05:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4eg4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":816}' 
#
_entry.id    4EG4 
#
_exptl.entry_id    4EG4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EG4 
_cell.length_a            87.478 
_cell.length_b            105.892 
_cell.length_c            207.553 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EG4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,FA 1 1 
B,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,GA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 R N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 86 A LYS 317 1_555 A N CAS 87 A CAS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C CAS 87 A CAS 318 1_555 A N PHE 88 A PHE 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C HIS 238 A HIS 469 1_555 A N CAS 239 A CAS 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C CAS 239 A CAS 470 1_555 A N VAL 240 A VAL 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale5 B C LYS 86 B LYS 317 1_555 B N CAS 87 B CAS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 B C CAS 87 B CAS 318 1_555 B N PHE 88 B PHE 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 B C HIS 238 B HIS 469 1_555 B N CAS 239 B CAS 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 B C CAS 239 B CAS 470 1_555 B N VAL 240 B VAL 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 212 n n 
C1 C2 GOL sing 213 n n 
C1 H11 GOL sing 214 n n 
C1 H12 GOL sing 215 n n 
O1 HO1 GOL sing 216 n n 
C2 O2 GOL sing 217 n n 
C2 C3 GOL sing 218 n n 
C2 H2 GOL sing 219 n n 
O2 HO2 GOL sing 220 n n 
C3 O3 GOL sing 221 n n 
C3 H31 GOL sing 222 n n 
C3 H32 GOL sing 223 n n 
O3 HO3 GOL sing 224 n n 
#
_atom_sites.entry_id                     4EG4 
_atom_sites.fract_transf_matrix[1][1]    0.011431 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 801 900 GOL GOL . 
D 2 GOL A 1 802 901 GOL GOL . 
E 2 GOL A 1 803 902 GOL GOL . 
F 2 GOL A 1 804 903 GOL GOL . 
G 2 GOL A 1 805 904 GOL GOL . 
H 2 GOL A 1 806 905 GOL GOL . 
I 2 GOL A 1 807 906 GOL GOL . 
J 2 GOL A 1 808 907 GOL GOL . 
K 2 GOL A 1 809 908 GOL GOL . 
L 2 GOL A 1 810 909 GOL GOL . 
M 2 GOL A 1 811 910 GOL GOL . 
N 3 DMS A 1 812 912 DMS DMS . 
O 3 DMS A 1 813 913 DMS DMS . 
P 3 DMS A 1 814 914 DMS DMS . 
Q 3 DMS A 1 815 915 DMS DMS . 
R 2 GOL A 1 816 906 GOL GOL . 
S 4 MET A 1 817 800 MET MET . 
T 3 DMS B 1 801 916 DMS DMS . 
U 2 GOL B 1 802 900 GOL GOL . 
V 2 GOL B 1 803 901 GOL GOL . 
W 2 GOL B 1 804 902 GOL GOL . 
X 2 GOL B 1 805 903 GOL GOL . 
Y 2 GOL B 1 806 904 GOL GOL . 
Z 2 GOL B 1 807 905 GOL GOL . 
AA 2 GOL B 1 808 907 GOL GOL . 
BA 2 GOL B 1 809 908 GOL GOL . 
CA 3 DMS B 1 810 909 DMS DMS . 
DA 5 SO4 B 1 811 910 SO4 SO4 . 
EA 6 0OT B 1 812 800 0OT 289 . 
FA 7 HOH A 1 901 1000 HOH HOH . 
FA 7 HOH A 2 902 1001 HOH HOH . 
FA 7 HOH A 3 903 1002 HOH HOH . 
FA 7 HOH A 4 904 1003 HOH HOH . 
FA 7 HOH A 5 905 1004 HOH HOH . 
FA 7 HOH A 6 906 1005 HOH HOH . 
FA 7 HOH A 7 907 1006 HOH HOH . 
FA 7 HOH A 8 908 1007 HOH HOH . 
FA 7 HOH A 9 909 1008 HOH HOH . 
FA 7 HOH A 10 910 1009 HOH HOH . 
FA 7 HOH A 11 911 1011 HOH HOH . 
FA 7 HOH A 12 912 1012 HOH HOH . 
FA 7 HOH A 13 913 1013 HOH HOH . 
FA 7 HOH A 14 914 1014 HOH HOH . 
FA 7 HOH A 15 915 1015 HOH HOH . 
FA 7 HOH A 16 916 1016 HOH HOH . 
FA 7 HOH A 17 917 1017 HOH HOH . 
FA 7 HOH A 18 918 1018 HOH HOH . 
FA 7 HOH A 19 919 1019 HOH HOH . 
FA 7 HOH A 20 920 1020 HOH HOH . 
FA 7 HOH A 21 921 1021 HOH HOH . 
FA 7 HOH A 22 922 1022 HOH HOH . 
FA 7 HOH A 23 923 1023 HOH HOH . 
FA 7 HOH A 24 924 1024 HOH HOH . 
FA 7 HOH A 25 925 1025 HOH HOH . 
FA 7 HOH A 26 926 1026 HOH HOH . 
FA 7 HOH A 27 927 1027 HOH HOH . 
FA 7 HOH A 28 928 1028 HOH HOH . 
FA 7 HOH A 29 929 1029 HOH HOH . 
FA 7 HOH A 30 930 1030 HOH HOH . 
FA 7 HOH A 31 931 1031 HOH HOH . 
FA 7 HOH A 32 932 1032 HOH HOH . 
FA 7 HOH A 33 933 1033 HOH HOH . 
FA 7 HOH A 34 934 1034 HOH HOH . 
FA 7 HOH A 35 935 1035 HOH HOH . 
FA 7 HOH A 36 936 1036 HOH HOH . 
FA 7 HOH A 37 937 1037 HOH HOH . 
FA 7 HOH A 38 938 1038 HOH HOH . 
FA 7 HOH A 39 939 1039 HOH HOH . 
FA 7 HOH A 40 940 1040 HOH HOH . 
FA 7 HOH A 41 941 1041 HOH HOH . 
FA 7 HOH A 42 942 1042 HOH HOH . 
FA 7 HOH A 43 943 1043 HOH HOH . 
FA 7 HOH A 44 944 1044 HOH HOH . 
FA 7 HOH A 45 945 1045 HOH HOH . 
FA 7 HOH A 46 946 1046 HOH HOH . 
FA 7 HOH A 47 947 1047 HOH HOH . 
FA 7 HOH A 48 948 1048 HOH HOH . 
FA 7 HOH A 49 949 1049 HOH HOH . 
FA 7 HOH A 50 950 1050 HOH HOH . 
FA 7 HOH A 51 951 1051 HOH HOH . 
FA 7 HOH A 52 952 1052 HOH HOH . 
FA 7 HOH A 53 953 1053 HOH HOH . 
FA 7 HOH A 54 954 1054 HOH HOH . 
FA 7 HOH A 55 955 1055 HOH HOH . 
FA 7 HOH A 56 956 1056 HOH HOH . 
FA 7 HOH A 57 957 1057 HOH HOH . 
FA 7 HOH A 58 958 1058 HOH HOH . 
FA 7 HOH A 59 959 1059 HOH HOH . 
FA 7 HOH A 60 960 1060 HOH HOH . 
FA 7 HOH A 61 961 1061 HOH HOH . 
FA 7 HOH A 62 962 1062 HOH HOH . 
FA 7 HOH A 63 963 1063 HOH HOH . 
FA 7 HOH A 64 964 1064 HOH HOH . 
FA 7 HOH A 65 965 1065 HOH HOH . 
FA 7 HOH A 66 966 1066 HOH HOH . 
FA 7 HOH A 67 967 1067 HOH HOH . 
FA 7 HOH A 68 968 1068 HOH HOH . 
FA 7 HOH A 69 969 1069 HOH HOH . 
FA 7 HOH A 70 970 1070 HOH HOH . 
FA 7 HOH A 71 971 1071 HOH HOH . 
FA 7 HOH A 72 972 1072 HOH HOH . 
FA 7 HOH A 73 973 1073 HOH HOH . 
FA 7 HOH A 74 974 1074 HOH HOH . 
FA 7 HOH A 75 975 1075 HOH HOH . 
FA 7 HOH A 76 976 1076 HOH HOH . 
FA 7 HOH A 77 977 1077 HOH HOH . 
FA 7 HOH A 78 978 1078 HOH HOH . 
FA 7 HOH A 79 979 1079 HOH HOH . 
FA 7 HOH A 80 980 1080 HOH HOH . 
FA 7 HOH A 81 981 1081 HOH HOH . 
FA 7 HOH A 82 982 1082 HOH HOH . 
FA 7 HOH A 83 983 1083 HOH HOH . 
FA 7 HOH A 84 984 1084 HOH HOH . 
FA 7 HOH A 85 985 1085 HOH HOH . 
FA 7 HOH A 86 986 1086 HOH HOH . 
FA 7 HOH A 87 987 1087 HOH HOH . 
FA 7 HOH A 88 988 1088 HOH HOH . 
FA 7 HOH A 89 989 1089 HOH HOH . 
FA 7 HOH A 90 990 1090 HOH HOH . 
FA 7 HOH A 91 991 1091 HOH HOH . 
FA 7 HOH A 92 992 1070 HOH HOH . 
GA 7 HOH B 1 901 1010 HOH HOH . 
GA 7 HOH B 2 902 1000 HOH HOH . 
GA 7 HOH B 3 903 1001 HOH HOH . 
GA 7 HOH B 4 904 1002 HOH HOH . 
GA 7 HOH B 5 905 1003 HOH HOH . 
GA 7 HOH B 6 906 1004 HOH HOH . 
GA 7 HOH B 7 907 1005 HOH HOH . 
GA 7 HOH B 8 908 1006 HOH HOH . 
GA 7 HOH B 9 909 1007 HOH HOH . 
GA 7 HOH B 10 910 1008 HOH HOH . 
GA 7 HOH B 11 911 1009 HOH HOH . 
GA 7 HOH B 12 912 1010 HOH HOH . 
GA 7 HOH B 13 913 1011 HOH HOH . 
GA 7 HOH B 14 914 1012 HOH HOH . 
GA 7 HOH B 15 915 1013 HOH HOH . 
GA 7 HOH B 16 916 1014 HOH HOH . 
GA 7 HOH B 17 917 1015 HOH HOH . 
GA 7 HOH B 18 918 1016 HOH HOH . 
GA 7 HOH B 19 919 1017 HOH HOH . 
GA 7 HOH B 20 920 1018 HOH HOH . 
GA 7 HOH B 21 921 1019 HOH HOH . 
GA 7 HOH B 22 922 1020 HOH HOH . 
GA 7 HOH B 23 923 1021 HOH HOH . 
GA 7 HOH B 24 924 1022 HOH HOH . 
GA 7 HOH B 25 925 1023 HOH HOH . 
GA 7 HOH B 26 926 1024 HOH HOH . 
GA 7 HOH B 27 927 1025 HOH HOH . 
GA 7 HOH B 28 928 1026 HOH HOH . 
GA 7 HOH B 29 929 1027 HOH HOH . 
GA 7 HOH B 30 930 1028 HOH HOH . 
GA 7 HOH B 31 931 1029 HOH HOH . 
GA 7 HOH B 32 932 1030 HOH HOH . 
GA 7 HOH B 33 933 1031 HOH HOH . 
GA 7 HOH B 34 934 1032 HOH HOH . 
GA 7 HOH B 35 935 1033 HOH HOH . 
GA 7 HOH B 36 936 1034 HOH HOH . 
GA 7 HOH B 37 937 1035 HOH HOH . 
GA 7 HOH B 38 938 1036 HOH HOH . 
GA 7 HOH B 39 939 1037 HOH HOH . 
GA 7 HOH B 40 940 1038 HOH HOH . 
GA 7 HOH B 41 941 1039 HOH HOH . 
GA 7 HOH B 42 942 1040 HOH HOH . 
GA 7 HOH B 43 943 1041 HOH HOH . 
GA 7 HOH B 44 944 1042 HOH HOH . 
GA 7 HOH B 45 945 1043 HOH HOH . 
GA 7 HOH B 46 946 1044 HOH HOH . 
GA 7 HOH B 47 947 1045 HOH HOH . 
GA 7 HOH B 48 948 1046 HOH HOH . 
GA 7 HOH B 49 949 1047 HOH HOH . 
GA 7 HOH B 50 950 1048 HOH HOH . 
GA 7 HOH B 51 951 1049 HOH HOH . 
GA 7 HOH B 52 952 1050 HOH HOH . 
GA 7 HOH B 53 953 1051 HOH HOH . 
GA 7 HOH B 54 954 1052 HOH HOH . 
GA 7 HOH B 55 955 1053 HOH HOH . 
GA 7 HOH B 56 956 1054 HOH HOH . 
GA 7 HOH B 57 957 1055 HOH HOH . 
GA 7 HOH B 58 958 1056 HOH HOH . 
GA 7 HOH B 59 959 1057 HOH HOH . 
GA 7 HOH B 60 960 1058 HOH HOH . 
GA 7 HOH B 61 961 1059 HOH HOH . 
GA 7 HOH B 62 962 1060 HOH HOH . 
GA 7 HOH B 63 963 1061 HOH HOH . 
GA 7 HOH B 64 964 1062 HOH HOH . 
GA 7 HOH B 65 965 1063 HOH HOH . 
GA 7 HOH B 66 966 1064 HOH HOH . 
GA 7 HOH B 67 967 1065 HOH HOH . 
GA 7 HOH B 68 968 1066 HOH HOH . 
GA 7 HOH B 69 969 1067 HOH HOH . 
GA 7 HOH B 70 970 1068 HOH HOH . 
GA 7 HOH B 71 971 1069 HOH HOH . 
GA 7 HOH B 72 972 1071 HOH HOH . 
GA 7 HOH B 73 973 1072 HOH HOH . 
GA 7 HOH B 74 974 1073 HOH HOH . 
GA 7 HOH B 75 975 1074 HOH HOH . 
GA 7 HOH B 76 976 1075 HOH HOH . 
GA 7 HOH B 77 977 1076 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . R 2 8.372 -8.746 31.843 1 38.81 ? C1 GOL 816 A 1 
HETATM 2 O O1 GOL . . . R 2 7.235 -8.078 31.279 1 38.77 ? O1 GOL 816 A 1 
HETATM 3 C C2 GOL . . . R 2 9.644 -8.379 31.094 1 39.43 ? C2 GOL 816 A 1 
HETATM 4 O O2 GOL . . . R 2 10.624 -9.39 31.387 1 39.38 ? O2 GOL 816 A 1 
HETATM 5 C C3 GOL . . . R 2 10.109 -6.975 31.503 1 39.21 ? C3 GOL 816 A 1 
HETATM 6 O O3 GOL . . . R 2 11.535 -6.915 31.613 1 38.07 ? O3 GOL 816 A 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#