data_4EGE # _model_server_result.job_id lhSZltNjygx58oJXfS8NCQ _model_server_result.datetime_utc '2025-04-21 16:00:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ege # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 4EGE # _exptl.entry_id 4EGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EGE _cell.length_a 120.42 _cell.length_b 120.42 _cell.length_c 58.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 41 A ASP 37 1_555 N ZN ZN . A ZN 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc2 A OE1 GLU 54 A GLU 50 1_555 O ZN ZN . A ZN 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc3 A OE1 GLU 75 A GLU 71 1_555 R ZN ZN . A ZN 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 A SG CYS 90 A CYS 86 1_555 P ZN ZN . A ZN 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 A NE2 HIS 212 A HIS 208 1_555 Q ZN ZN . A ZN 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc6 A OD1 ASP 234 A ASP 230 1_555 M ZN ZN . A ZN 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc7 A OD2 ASP 234 A ASP 230 1_555 M ZN ZN . A ZN 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc8 A OD2 ASP 246 A ASP 242 1_555 L ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 A OD1 ASP 246 A ASP 242 1_555 M ZN ZN . A ZN 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc10 A NE2 HIS 310 A HIS 306 1_555 L ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc11 A OE2 GLU 339 A GLU 335 1_555 L ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc12 A OE2 GLU 353 A GLU 349 1_555 L ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc13 A OE1 GLU 353 A GLU 349 1_555 M ZN ZN . A ZN 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc14 A ND1 HIS 371 A HIS 367 1_555 K ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc15 A OE1 GLU 372 A GLU 368 1_555 J ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc16 O ZN ZN . A ZN 414 1_555 Z O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc17 P ZN ZN . A ZN 415 1_555 Z O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc18 Q ZN ZN . A ZN 416 1_555 Z O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc19 Q ZN ZN . A ZN 416 1_555 Z O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc20 Q ZN ZN . A ZN 416 1_555 Z O HOH . A HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4EGE _atom_sites.fract_transf_matrix[1][1] 0.008304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 5 EDO EDO . C 2 EDO A 1 402 6 EDO EDO . D 2 EDO A 1 403 1 EDO EDO . E 2 EDO A 1 404 2 EDO EDO . F 2 EDO A 1 405 3 EDO EDO . G 2 EDO A 1 406 4 EDO EDO . H 2 EDO A 1 407 5 EDO EDO . I 2 EDO A 1 408 6 EDO EDO . J 3 ZN A 1 409 1 ZN ZN . K 3 ZN A 1 410 2 ZN ZN . L 3 ZN A 1 411 3 ZN ZN . M 3 ZN A 1 412 4 ZN ZN . N 3 ZN A 1 413 6 ZN ZN . O 3 ZN A 1 414 8 ZN ZN . P 3 ZN A 1 415 9 ZN ZN . Q 3 ZN A 1 416 10 ZN ZN . R 3 ZN A 1 417 12 ZN ZN . S 4 UNX A 1 418 1 UNX UNX . T 4 UNX A 1 419 3 UNX UNX . U 4 UNX A 1 420 4 UNX UNX . V 4 UNX A 1 421 5 UNX UNX . W 4 UNX A 1 422 6 UNX UNX . X 4 UNX A 1 423 7 UNX UNX . Y 4 UNX A 1 424 8 UNX UNX . Z 5 HOH A 1 501 1 HOH HOH . Z 5 HOH A 2 502 2 HOH HOH . Z 5 HOH A 3 503 3 HOH HOH . Z 5 HOH A 4 504 4 HOH HOH . Z 5 HOH A 5 505 5 HOH HOH . Z 5 HOH A 6 506 6 HOH HOH . Z 5 HOH A 7 507 7 HOH HOH . Z 5 HOH A 8 508 9 HOH HOH . Z 5 HOH A 9 509 10 HOH HOH . Z 5 HOH A 10 510 11 HOH HOH . Z 5 HOH A 11 511 12 HOH HOH . Z 5 HOH A 12 512 13 HOH HOH . Z 5 HOH A 13 513 15 HOH HOH . Z 5 HOH A 14 514 16 HOH HOH . Z 5 HOH A 15 515 17 HOH HOH . Z 5 HOH A 16 516 18 HOH HOH . Z 5 HOH A 17 517 19 HOH HOH . Z 5 HOH A 18 518 20 HOH HOH . Z 5 HOH A 19 519 22 HOH HOH . Z 5 HOH A 20 520 24 HOH HOH . Z 5 HOH A 21 521 26 HOH HOH . Z 5 HOH A 22 522 27 HOH HOH . Z 5 HOH A 23 523 28 HOH HOH . Z 5 HOH A 24 524 29 HOH HOH . Z 5 HOH A 25 525 31 HOH HOH . Z 5 HOH A 26 526 32 HOH HOH . Z 5 HOH A 27 527 33 HOH HOH . Z 5 HOH A 28 528 34 HOH HOH . Z 5 HOH A 29 529 35 HOH HOH . Z 5 HOH A 30 530 36 HOH HOH . Z 5 HOH A 31 531 38 HOH HOH . Z 5 HOH A 32 532 40 HOH HOH . Z 5 HOH A 33 533 41 HOH HOH . Z 5 HOH A 34 534 42 HOH HOH . Z 5 HOH A 35 535 43 HOH HOH . Z 5 HOH A 36 536 44 HOH HOH . Z 5 HOH A 37 537 45 HOH HOH . Z 5 HOH A 38 538 46 HOH HOH . Z 5 HOH A 39 539 47 HOH HOH . Z 5 HOH A 40 540 48 HOH HOH . Z 5 HOH A 41 541 49 HOH HOH . Z 5 HOH A 42 542 50 HOH HOH . Z 5 HOH A 43 543 51 HOH HOH . Z 5 HOH A 44 544 52 HOH HOH . Z 5 HOH A 45 545 53 HOH HOH . Z 5 HOH A 46 546 54 HOH HOH . Z 5 HOH A 47 547 55 HOH HOH . Z 5 HOH A 48 548 58 HOH HOH . Z 5 HOH A 49 549 59 HOH HOH . Z 5 HOH A 50 550 60 HOH HOH . Z 5 HOH A 51 551 61 HOH HOH . Z 5 HOH A 52 552 62 HOH HOH . Z 5 HOH A 53 553 63 HOH HOH . Z 5 HOH A 54 554 64 HOH HOH . Z 5 HOH A 55 555 65 HOH HOH . Z 5 HOH A 56 556 66 HOH HOH . Z 5 HOH A 57 557 67 HOH HOH . Z 5 HOH A 58 558 68 HOH HOH . Z 5 HOH A 59 559 69 HOH HOH . Z 5 HOH A 60 560 70 HOH HOH . Z 5 HOH A 61 561 71 HOH HOH . Z 5 HOH A 62 562 72 HOH HOH . Z 5 HOH A 63 563 73 HOH HOH . Z 5 HOH A 64 564 74 HOH HOH . Z 5 HOH A 65 565 75 HOH HOH . Z 5 HOH A 66 566 77 HOH HOH . Z 5 HOH A 67 567 78 HOH HOH . Z 5 HOH A 68 568 79 HOH HOH . Z 5 HOH A 69 569 80 HOH HOH . Z 5 HOH A 70 570 81 HOH HOH . Z 5 HOH A 71 571 82 HOH HOH . Z 5 HOH A 72 572 83 HOH HOH . Z 5 HOH A 73 573 84 HOH HOH . Z 5 HOH A 74 574 85 HOH HOH . Z 5 HOH A 75 575 86 HOH HOH . Z 5 HOH A 76 576 87 HOH HOH . Z 5 HOH A 77 577 88 HOH HOH . Z 5 HOH A 78 578 89 HOH HOH . Z 5 HOH A 79 579 90 HOH HOH . Z 5 HOH A 80 580 91 HOH HOH . Z 5 HOH A 81 581 92 HOH HOH . Z 5 HOH A 82 582 93 HOH HOH . Z 5 HOH A 83 583 95 HOH HOH . Z 5 HOH A 84 584 96 HOH HOH . Z 5 HOH A 85 585 97 HOH HOH . Z 5 HOH A 86 586 98 HOH HOH . Z 5 HOH A 87 587 99 HOH HOH . Z 5 HOH A 88 588 100 HOH HOH . Z 5 HOH A 89 589 103 HOH HOH . Z 5 HOH A 90 590 105 HOH HOH . Z 5 HOH A 91 591 106 HOH HOH . Z 5 HOH A 92 592 107 HOH HOH . Z 5 HOH A 93 593 108 HOH HOH . Z 5 HOH A 94 594 109 HOH HOH . Z 5 HOH A 95 595 110 HOH HOH . Z 5 HOH A 96 596 111 HOH HOH . Z 5 HOH A 97 597 112 HOH HOH . Z 5 HOH A 98 598 115 HOH HOH . Z 5 HOH A 99 599 117 HOH HOH . Z 5 HOH A 100 600 118 HOH HOH . Z 5 HOH A 101 601 120 HOH HOH . Z 5 HOH A 102 602 121 HOH HOH . Z 5 HOH A 103 603 122 HOH HOH . Z 5 HOH A 104 604 123 HOH HOH . Z 5 HOH A 105 605 125 HOH HOH . Z 5 HOH A 106 606 126 HOH HOH . Z 5 HOH A 107 607 127 HOH HOH . Z 5 HOH A 108 608 131 HOH HOH . Z 5 HOH A 109 609 132 HOH HOH . Z 5 HOH A 110 610 133 HOH HOH . Z 5 HOH A 111 611 134 HOH HOH . Z 5 HOH A 112 612 136 HOH HOH . Z 5 HOH A 113 613 137 HOH HOH . Z 5 HOH A 114 614 140 HOH HOH . Z 5 HOH A 115 615 142 HOH HOH . Z 5 HOH A 116 616 143 HOH HOH . Z 5 HOH A 117 617 144 HOH HOH . Z 5 HOH A 118 618 145 HOH HOH . Z 5 HOH A 119 619 146 HOH HOH . Z 5 HOH A 120 620 149 HOH HOH . Z 5 HOH A 121 621 150 HOH HOH . Z 5 HOH A 122 622 151 HOH HOH . Z 5 HOH A 123 623 153 HOH HOH . Z 5 HOH A 124 624 154 HOH HOH . Z 5 HOH A 125 625 156 HOH HOH . Z 5 HOH A 126 626 158 HOH HOH . Z 5 HOH A 127 627 159 HOH HOH . Z 5 HOH A 128 628 160 HOH HOH . Z 5 HOH A 129 629 161 HOH HOH . Z 5 HOH A 130 630 162 HOH HOH . Z 5 HOH A 131 631 163 HOH HOH . Z 5 HOH A 132 632 165 HOH HOH . Z 5 HOH A 133 633 166 HOH HOH . Z 5 HOH A 134 634 167 HOH HOH . Z 5 HOH A 135 635 168 HOH HOH . Z 5 HOH A 136 636 170 HOH HOH . Z 5 HOH A 137 637 171 HOH HOH . Z 5 HOH A 138 638 172 HOH HOH . Z 5 HOH A 139 639 173 HOH HOH . Z 5 HOH A 140 640 174 HOH HOH . Z 5 HOH A 141 641 175 HOH HOH . Z 5 HOH A 142 642 176 HOH HOH . Z 5 HOH A 143 643 177 HOH HOH . Z 5 HOH A 144 644 178 HOH HOH . Z 5 HOH A 145 645 179 HOH HOH . Z 5 HOH A 146 646 180 HOH HOH . Z 5 HOH A 147 647 181 HOH HOH . Z 5 HOH A 148 648 185 HOH HOH . Z 5 HOH A 149 649 189 HOH HOH . Z 5 HOH A 150 650 190 HOH HOH . Z 5 HOH A 151 651 191 HOH HOH . Z 5 HOH A 152 652 194 HOH HOH . Z 5 HOH A 153 653 195 HOH HOH . Z 5 HOH A 154 654 196 HOH HOH . Z 5 HOH A 155 655 197 HOH HOH . Z 5 HOH A 156 656 198 HOH HOH . Z 5 HOH A 157 657 199 HOH HOH . Z 5 HOH A 158 658 201 HOH HOH . Z 5 HOH A 159 659 203 HOH HOH . Z 5 HOH A 160 660 206 HOH HOH . Z 5 HOH A 161 661 207 HOH HOH . Z 5 HOH A 162 662 208 HOH HOH . Z 5 HOH A 163 663 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 2 30.9 25.799 -3.849 1 40.05 ? C1 EDO 408 A 1 HETATM 2 O O1 EDO . . . I 2 30.536 27.111 -4.289 1 39.13 ? O1 EDO 408 A 1 HETATM 3 C C2 EDO . . . I 2 32.011 25.307 -4.773 1 37.4 ? C2 EDO 408 A 1 HETATM 4 O O2 EDO . . . I 2 33.091 26.239 -4.766 1 36.94 ? O2 EDO 408 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #