data_4EGG # _model_server_result.job_id YWQCO057PcP4uitjA0Gy7Q _model_server_result.datetime_utc '2024-11-19 10:39:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4egg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 4EGG # _exptl.entry_id 4EGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.3 _cell.angle_gamma 90 _cell.entry_id 4EGG _cell.length_a 183.76 _cell.length_b 90.84 _cell.length_c 107.7 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -62.235266 0 87.898018 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4EGG _atom_sites.fract_transf_matrix[1][1] 0.005442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003853 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 301 4 GOL GOL . H 2 GOL A 1 302 5 GOL GOL . I 2 GOL A 1 303 7 GOL GOL . J 2 GOL C 1 301 1 GOL GOL . K 2 GOL D 1 301 6 GOL GOL . L 2 GOL E 1 301 2 GOL GOL . M 2 GOL E 1 302 8 GOL GOL . N 2 GOL F 1 301 3 GOL GOL . O 3 HOH A 1 401 9 HOH HOH . O 3 HOH A 2 402 12 HOH HOH . O 3 HOH A 3 403 16 HOH HOH . O 3 HOH A 4 404 17 HOH HOH . O 3 HOH A 5 405 24 HOH HOH . O 3 HOH A 6 406 28 HOH HOH . O 3 HOH A 7 407 32 HOH HOH . O 3 HOH A 8 408 50 HOH HOH . O 3 HOH A 9 409 58 HOH HOH . O 3 HOH A 10 410 62 HOH HOH . O 3 HOH A 11 411 71 HOH HOH . O 3 HOH A 12 412 74 HOH HOH . O 3 HOH A 13 413 78 HOH HOH . O 3 HOH A 14 414 83 HOH HOH . O 3 HOH A 15 415 86 HOH HOH . O 3 HOH A 16 416 91 HOH HOH . O 3 HOH A 17 417 96 HOH HOH . O 3 HOH A 18 418 98 HOH HOH . O 3 HOH A 19 419 104 HOH HOH . O 3 HOH A 20 420 108 HOH HOH . O 3 HOH A 21 421 110 HOH HOH . O 3 HOH A 22 422 115 HOH HOH . O 3 HOH A 23 423 117 HOH HOH . O 3 HOH A 24 424 121 HOH HOH . O 3 HOH A 25 425 131 HOH HOH . O 3 HOH A 26 426 133 HOH HOH . O 3 HOH A 27 427 134 HOH HOH . O 3 HOH A 28 428 139 HOH HOH . O 3 HOH A 29 429 140 HOH HOH . O 3 HOH A 30 430 148 HOH HOH . O 3 HOH A 31 431 150 HOH HOH . O 3 HOH A 32 432 162 HOH HOH . O 3 HOH A 33 433 173 HOH HOH . O 3 HOH A 34 434 186 HOH HOH . O 3 HOH A 35 435 187 HOH HOH . O 3 HOH A 36 436 189 HOH HOH . O 3 HOH A 37 437 191 HOH HOH . O 3 HOH A 38 438 194 HOH HOH . O 3 HOH A 39 439 195 HOH HOH . O 3 HOH A 40 440 208 HOH HOH . O 3 HOH A 41 441 215 HOH HOH . O 3 HOH A 42 442 216 HOH HOH . O 3 HOH A 43 443 229 HOH HOH . O 3 HOH A 44 444 236 HOH HOH . O 3 HOH A 45 445 240 HOH HOH . O 3 HOH A 46 446 244 HOH HOH . O 3 HOH A 47 447 250 HOH HOH . O 3 HOH A 48 448 251 HOH HOH . O 3 HOH A 49 449 260 HOH HOH . O 3 HOH A 50 450 264 HOH HOH . O 3 HOH A 51 451 265 HOH HOH . O 3 HOH A 52 452 266 HOH HOH . O 3 HOH A 53 453 277 HOH HOH . O 3 HOH A 54 454 286 HOH HOH . O 3 HOH A 55 455 287 HOH HOH . O 3 HOH A 56 456 300 HOH HOH . P 3 HOH B 1 301 13 HOH HOH . P 3 HOH B 2 302 18 HOH HOH . P 3 HOH B 3 303 30 HOH HOH . P 3 HOH B 4 304 35 HOH HOH . P 3 HOH B 5 305 40 HOH HOH . P 3 HOH B 6 306 45 HOH HOH . P 3 HOH B 7 307 51 HOH HOH . P 3 HOH B 8 308 53 HOH HOH . P 3 HOH B 9 309 61 HOH HOH . P 3 HOH B 10 310 64 HOH HOH . P 3 HOH B 11 311 72 HOH HOH . P 3 HOH B 12 312 79 HOH HOH . P 3 HOH B 13 313 87 HOH HOH . P 3 HOH B 14 314 90 HOH HOH . P 3 HOH B 15 315 94 HOH HOH . P 3 HOH B 16 316 95 HOH HOH . P 3 HOH B 17 317 103 HOH HOH . P 3 HOH B 18 318 109 HOH HOH . P 3 HOH B 19 319 112 HOH HOH . P 3 HOH B 20 320 114 HOH HOH . P 3 HOH B 21 321 116 HOH HOH . P 3 HOH B 22 322 122 HOH HOH . P 3 HOH B 23 323 123 HOH HOH . P 3 HOH B 24 324 124 HOH HOH . P 3 HOH B 25 325 125 HOH HOH . P 3 HOH B 26 326 126 HOH HOH . P 3 HOH B 27 327 129 HOH HOH . P 3 HOH B 28 328 146 HOH HOH . P 3 HOH B 29 329 151 HOH HOH . P 3 HOH B 30 330 154 HOH HOH . P 3 HOH B 31 331 157 HOH HOH . P 3 HOH B 32 332 158 HOH HOH . P 3 HOH B 33 333 160 HOH HOH . P 3 HOH B 34 334 164 HOH HOH . P 3 HOH B 35 335 166 HOH HOH . P 3 HOH B 36 336 169 HOH HOH . P 3 HOH B 37 337 171 HOH HOH . P 3 HOH B 38 338 172 HOH HOH . P 3 HOH B 39 339 176 HOH HOH . P 3 HOH B 40 340 178 HOH HOH . P 3 HOH B 41 341 185 HOH HOH . P 3 HOH B 42 342 190 HOH HOH . P 3 HOH B 43 343 198 HOH HOH . P 3 HOH B 44 344 199 HOH HOH . P 3 HOH B 45 345 202 HOH HOH . P 3 HOH B 46 346 207 HOH HOH . P 3 HOH B 47 347 213 HOH HOH . P 3 HOH B 48 348 214 HOH HOH . P 3 HOH B 49 349 218 HOH HOH . P 3 HOH B 50 350 220 HOH HOH . P 3 HOH B 51 351 225 HOH HOH . P 3 HOH B 52 352 227 HOH HOH . P 3 HOH B 53 353 230 HOH HOH . P 3 HOH B 54 354 237 HOH HOH . P 3 HOH B 55 355 238 HOH HOH . P 3 HOH B 56 356 248 HOH HOH . P 3 HOH B 57 357 256 HOH HOH . P 3 HOH B 58 358 267 HOH HOH . P 3 HOH B 59 359 272 HOH HOH . P 3 HOH B 60 360 275 HOH HOH . P 3 HOH B 61 361 278 HOH HOH . P 3 HOH B 62 362 279 HOH HOH . P 3 HOH B 63 363 285 HOH HOH . P 3 HOH B 64 364 295 HOH HOH . P 3 HOH B 65 365 297 HOH HOH . P 3 HOH B 66 366 298 HOH HOH . P 3 HOH B 67 367 299 HOH HOH . P 3 HOH B 68 368 304 HOH HOH . Q 3 HOH C 1 401 11 HOH HOH . Q 3 HOH C 2 402 26 HOH HOH . Q 3 HOH C 3 403 31 HOH HOH . Q 3 HOH C 4 404 34 HOH HOH . Q 3 HOH C 5 405 37 HOH HOH . Q 3 HOH C 6 406 41 HOH HOH . Q 3 HOH C 7 407 44 HOH HOH . Q 3 HOH C 8 408 48 HOH HOH . Q 3 HOH C 9 409 52 HOH HOH . Q 3 HOH C 10 410 54 HOH HOH . Q 3 HOH C 11 411 56 HOH HOH . Q 3 HOH C 12 412 67 HOH HOH . Q 3 HOH C 13 413 68 HOH HOH . Q 3 HOH C 14 414 85 HOH HOH . Q 3 HOH C 15 415 102 HOH HOH . Q 3 HOH C 16 416 111 HOH HOH . Q 3 HOH C 17 417 113 HOH HOH . Q 3 HOH C 18 418 118 HOH HOH . Q 3 HOH C 19 419 119 HOH HOH . Q 3 HOH C 20 420 135 HOH HOH . Q 3 HOH C 21 421 144 HOH HOH . Q 3 HOH C 22 422 147 HOH HOH . Q 3 HOH C 23 423 153 HOH HOH . Q 3 HOH C 24 424 155 HOH HOH . Q 3 HOH C 25 425 170 HOH HOH . Q 3 HOH C 26 426 174 HOH HOH . Q 3 HOH C 27 427 182 HOH HOH . Q 3 HOH C 28 428 184 HOH HOH . Q 3 HOH C 29 429 196 HOH HOH . Q 3 HOH C 30 430 200 HOH HOH . Q 3 HOH C 31 431 201 HOH HOH . Q 3 HOH C 32 432 203 HOH HOH . Q 3 HOH C 33 433 204 HOH HOH . Q 3 HOH C 34 434 217 HOH HOH . Q 3 HOH C 35 435 224 HOH HOH . Q 3 HOH C 36 436 226 HOH HOH . Q 3 HOH C 37 437 232 HOH HOH . Q 3 HOH C 38 438 234 HOH HOH . Q 3 HOH C 39 439 242 HOH HOH . Q 3 HOH C 40 440 246 HOH HOH . Q 3 HOH C 41 441 259 HOH HOH . Q 3 HOH C 42 442 261 HOH HOH . Q 3 HOH C 43 443 284 HOH HOH . Q 3 HOH C 44 444 290 HOH HOH . Q 3 HOH C 45 445 296 HOH HOH . R 3 HOH D 1 401 21 HOH HOH . R 3 HOH D 2 402 25 HOH HOH . R 3 HOH D 3 403 27 HOH HOH . R 3 HOH D 4 404 33 HOH HOH . R 3 HOH D 5 405 38 HOH HOH . R 3 HOH D 6 406 47 HOH HOH . R 3 HOH D 7 407 49 HOH HOH . R 3 HOH D 8 408 55 HOH HOH . R 3 HOH D 9 409 57 HOH HOH . R 3 HOH D 10 410 59 HOH HOH . R 3 HOH D 11 411 60 HOH HOH . R 3 HOH D 12 412 66 HOH HOH . R 3 HOH D 13 413 73 HOH HOH . R 3 HOH D 14 414 75 HOH HOH . R 3 HOH D 15 415 76 HOH HOH . R 3 HOH D 16 416 81 HOH HOH . R 3 HOH D 17 417 84 HOH HOH . R 3 HOH D 18 418 97 HOH HOH . R 3 HOH D 19 419 99 HOH HOH . R 3 HOH D 20 420 106 HOH HOH . R 3 HOH D 21 421 127 HOH HOH . R 3 HOH D 22 422 128 HOH HOH . R 3 HOH D 23 423 138 HOH HOH . R 3 HOH D 24 424 141 HOH HOH . R 3 HOH D 25 425 149 HOH HOH . R 3 HOH D 26 426 156 HOH HOH . R 3 HOH D 27 427 161 HOH HOH . R 3 HOH D 28 428 165 HOH HOH . R 3 HOH D 29 429 175 HOH HOH . R 3 HOH D 30 430 177 HOH HOH . R 3 HOH D 31 431 180 HOH HOH . R 3 HOH D 32 432 181 HOH HOH . R 3 HOH D 33 433 192 HOH HOH . R 3 HOH D 34 434 193 HOH HOH . R 3 HOH D 35 435 197 HOH HOH . R 3 HOH D 36 436 205 HOH HOH . R 3 HOH D 37 437 206 HOH HOH . R 3 HOH D 38 438 219 HOH HOH . R 3 HOH D 39 439 222 HOH HOH . R 3 HOH D 40 440 223 HOH HOH . R 3 HOH D 41 441 239 HOH HOH . R 3 HOH D 42 442 245 HOH HOH . R 3 HOH D 43 443 255 HOH HOH . R 3 HOH D 44 444 258 HOH HOH . R 3 HOH D 45 445 263 HOH HOH . R 3 HOH D 46 446 269 HOH HOH . R 3 HOH D 47 447 274 HOH HOH . R 3 HOH D 48 448 280 HOH HOH . R 3 HOH D 49 449 282 HOH HOH . R 3 HOH D 50 450 292 HOH HOH . R 3 HOH D 51 451 293 HOH HOH . R 3 HOH D 52 452 294 HOH HOH . S 3 HOH E 1 401 10 HOH HOH . S 3 HOH E 2 402 14 HOH HOH . S 3 HOH E 3 403 19 HOH HOH . S 3 HOH E 4 404 20 HOH HOH . S 3 HOH E 5 405 22 HOH HOH . S 3 HOH E 6 406 29 HOH HOH . S 3 HOH E 7 407 46 HOH HOH . S 3 HOH E 8 408 69 HOH HOH . S 3 HOH E 9 409 80 HOH HOH . S 3 HOH E 10 410 88 HOH HOH . S 3 HOH E 11 411 89 HOH HOH . S 3 HOH E 12 412 92 HOH HOH . S 3 HOH E 13 413 93 HOH HOH . S 3 HOH E 14 414 100 HOH HOH . S 3 HOH E 15 415 101 HOH HOH . S 3 HOH E 16 416 107 HOH HOH . S 3 HOH E 17 417 120 HOH HOH . S 3 HOH E 18 418 130 HOH HOH . S 3 HOH E 19 419 132 HOH HOH . S 3 HOH E 20 420 142 HOH HOH . S 3 HOH E 21 421 145 HOH HOH . S 3 HOH E 22 422 159 HOH HOH . S 3 HOH E 23 423 167 HOH HOH . S 3 HOH E 24 424 168 HOH HOH . S 3 HOH E 25 425 179 HOH HOH . S 3 HOH E 26 426 183 HOH HOH . S 3 HOH E 27 427 209 HOH HOH . S 3 HOH E 28 428 210 HOH HOH . S 3 HOH E 29 429 211 HOH HOH . S 3 HOH E 30 430 212 HOH HOH . S 3 HOH E 31 431 221 HOH HOH . S 3 HOH E 32 432 233 HOH HOH . S 3 HOH E 33 433 235 HOH HOH . S 3 HOH E 34 434 252 HOH HOH . S 3 HOH E 35 435 253 HOH HOH . S 3 HOH E 36 436 254 HOH HOH . S 3 HOH E 37 437 262 HOH HOH . S 3 HOH E 38 438 268 HOH HOH . S 3 HOH E 39 439 271 HOH HOH . S 3 HOH E 40 440 273 HOH HOH . S 3 HOH E 41 441 289 HOH HOH . S 3 HOH E 42 442 291 HOH HOH . S 3 HOH E 43 443 303 HOH HOH . T 3 HOH F 1 401 15 HOH HOH . T 3 HOH F 2 402 23 HOH HOH . T 3 HOH F 3 403 36 HOH HOH . T 3 HOH F 4 404 39 HOH HOH . T 3 HOH F 5 405 42 HOH HOH . T 3 HOH F 6 406 43 HOH HOH . T 3 HOH F 7 407 63 HOH HOH . T 3 HOH F 8 408 65 HOH HOH . T 3 HOH F 9 409 70 HOH HOH . T 3 HOH F 10 410 77 HOH HOH . T 3 HOH F 11 411 82 HOH HOH . T 3 HOH F 12 412 105 HOH HOH . T 3 HOH F 13 413 136 HOH HOH . T 3 HOH F 14 414 137 HOH HOH . T 3 HOH F 15 415 143 HOH HOH . T 3 HOH F 16 416 152 HOH HOH . T 3 HOH F 17 417 163 HOH HOH . T 3 HOH F 18 418 188 HOH HOH . T 3 HOH F 19 419 228 HOH HOH . T 3 HOH F 20 420 231 HOH HOH . T 3 HOH F 21 421 241 HOH HOH . T 3 HOH F 22 422 243 HOH HOH . T 3 HOH F 23 423 247 HOH HOH . T 3 HOH F 24 424 249 HOH HOH . T 3 HOH F 25 425 257 HOH HOH . T 3 HOH F 26 426 270 HOH HOH . T 3 HOH F 27 427 276 HOH HOH . T 3 HOH F 28 428 281 HOH HOH . T 3 HOH F 29 429 283 HOH HOH . T 3 HOH F 30 430 288 HOH HOH . T 3 HOH F 31 431 301 HOH HOH . T 3 HOH F 32 432 302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 -9.927 38.043 14.741 1 59.34 ? C1 GOL 301 C 1 HETATM 2 O O1 GOL . . . J 2 -10.303 37.152 13.7 1 60.66 ? O1 GOL 301 C 1 HETATM 3 C C2 GOL . . . J 2 -8.475 38.449 14.621 1 59.54 ? C2 GOL 301 C 1 HETATM 4 O O2 GOL . . . J 2 -7.644 37.558 15.374 1 59.84 ? O2 GOL 301 C 1 HETATM 5 C C3 GOL . . . J 2 -8.263 39.857 15.127 1 59.27 ? C3 GOL 301 C 1 HETATM 6 O O3 GOL . . . J 2 -8.788 40.811 14.217 1 60.21 ? O3 GOL 301 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #