data_4EGP # _model_server_result.job_id bF6w3DrxPcsj9RfYMVLOFw _model_server_result.datetime_utc '2024-11-23 03:36:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4egp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 4EGP # _exptl.entry_id 4EGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EGP _cell.length_a 143.545 _cell.length_b 172.21 _cell.length_c 106.258 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,M 1 1 B,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 359 A CYS 358 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 B SG CYS 359 B CYS 358 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 164 n n CHA C4D HEM doub 165 n n CHA HHA HEM sing 166 n n CHB C4A HEM sing 167 n n CHB C1B HEM doub 168 n n CHB HHB HEM sing 169 n n CHC C4B HEM sing 170 n n CHC C1C HEM doub 171 n n CHC HHC HEM sing 172 n n CHD C4C HEM doub 173 n n CHD C1D HEM sing 174 n n CHD HHD HEM sing 175 n n C1A C2A HEM doub 176 n y C1A NA HEM sing 177 n y C2A C3A HEM sing 178 n y C2A CAA HEM sing 179 n n C3A C4A HEM doub 180 n y C3A CMA HEM sing 181 n n C4A NA HEM sing 182 n y CMA HMA HEM sing 183 n n CMA HMAA HEM sing 184 n n CMA HMAB HEM sing 185 n n CAA CBA HEM sing 186 n n CAA HAA HEM sing 187 n n CAA HAAA HEM sing 188 n n CBA CGA HEM sing 189 n n CBA HBA HEM sing 190 n n CBA HBAA HEM sing 191 n n CGA O1A HEM doub 192 n n CGA O2A HEM sing 193 n n C1B C2B HEM sing 194 n n C1B NB HEM sing 195 n n C2B C3B HEM doub 196 n n C2B CMB HEM sing 197 n n C3B C4B HEM sing 198 n n C3B CAB HEM sing 199 n n C4B NB HEM doub 200 n n CMB HMB HEM sing 201 n n CMB HMBA HEM sing 202 n n CMB HMBB HEM sing 203 n n CAB CBB HEM doub 204 n n CAB HAB HEM sing 205 n n CBB HBB HEM sing 206 n n CBB HBBA HEM sing 207 n n C1C C2C HEM sing 208 n y C1C NC HEM sing 209 n y C2C C3C HEM doub 210 n y C2C CMC HEM sing 211 n n C3C C4C HEM sing 212 n y C3C CAC HEM sing 213 n n C4C NC HEM sing 214 n y CMC HMC HEM sing 215 n n CMC HMCA HEM sing 216 n n CMC HMCB HEM sing 217 n n CAC CBC HEM doub 218 n n CAC HAC HEM sing 219 n n CBC HBC HEM sing 220 n n CBC HBCA HEM sing 221 n n C1D C2D HEM sing 222 n n C1D ND HEM doub 223 n n C2D C3D HEM doub 224 n n C2D CMD HEM sing 225 n n C3D C4D HEM sing 226 n n C3D CAD HEM sing 227 n n C4D ND HEM sing 228 n n CMD HMD HEM sing 229 n n CMD HMDA HEM sing 230 n n CMD HMDB HEM sing 231 n n CAD CBD HEM sing 232 n n CAD HAD HEM sing 233 n n CAD HADA HEM sing 234 n n CBD CGD HEM sing 235 n n CBD HBD HEM sing 236 n n CBD HBDA HEM sing 237 n n CGD O1D HEM doub 238 n n CGD O2D HEM sing 239 n n O2A H2A HEM sing 240 n n O2D H2D HEM sing 241 n n FE NA HEM sing 242 n n FE NB HEM sing 243 n n FE NC HEM sing 244 n n FE ND HEM sing 245 n n # _atom_sites.entry_id 4EGP _atom_sites.fract_transf_matrix[1][1] 0.006966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 430 HEM HEM . D 3 FIV A 1 502 555 FIV FIV . E 3 FIV A 1 503 2555 FIV FIV . F 4 SO4 A 1 504 501 SO4 SO4 . G 4 SO4 A 1 505 502 SO4 SO4 . H 5 GOL A 1 506 601 GOL GOL . I 6 CL A 1 507 701 CL CL . J 2 HEM B 1 501 430 HEM HEM . K 3 FIV B 1 502 555 FIV FIV . L 4 SO4 B 1 503 501 SO4 SO4 . M 7 HOH A 1 601 2 HOH HOH . M 7 HOH A 2 602 3 HOH HOH . M 7 HOH A 3 603 5 HOH HOH . M 7 HOH A 4 604 6 HOH HOH . M 7 HOH A 5 605 7 HOH HOH . M 7 HOH A 6 606 8 HOH HOH . M 7 HOH A 7 607 12 HOH HOH . M 7 HOH A 8 608 13 HOH HOH . M 7 HOH A 9 609 14 HOH HOH . M 7 HOH A 10 610 17 HOH HOH . M 7 HOH A 11 611 18 HOH HOH . N 7 HOH B 1 601 1 HOH HOH . N 7 HOH B 2 602 4 HOH HOH . N 7 HOH B 3 603 9 HOH HOH . N 7 HOH B 4 604 10 HOH HOH . N 7 HOH B 5 605 11 HOH HOH . N 7 HOH B 6 606 15 HOH HOH . N 7 HOH B 7 607 16 HOH HOH . N 7 HOH B 8 608 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . J 2 -25.439 43.846 -9.42 1 56.58 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . J 2 -21.423 44.373 -11.993 1 57.37 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . J 2 -24.121 44.424 -15.998 1 57.71 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . J 2 -27.886 45.622 -13.243 1 56.97 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . J 2 -24.107 43.838 -9.778 1 56.15 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . J 2 -22.997 43.462 -8.919 1 54.2 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . J 2 -21.889 43.595 -9.636 1 54.66 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . J 2 -22.258 44.083 -10.953 1 55.61 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . J 2 -20.472 43.279 -9.132 1 54.66 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . J 2 -23.088 42.954 -7.462 1 51.46 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . J 2 -23.327 44.069 -6.46 1 49.49 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . J 2 -23.312 43.471 -5.075 1 49.46 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . J 2 -23.332 44.191 -4.039 1 49.1 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . J 2 -23.292 42.225 -5 1 50.3 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . J 2 -21.799 44.396 -13.314 1 58.6 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . J 2 -20.91 44.401 -14.461 1 59.02 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . J 2 -21.653 44.419 -15.571 1 58.7 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . J 2 -23.038 44.421 -15.162 1 58.15 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . J 2 -19.372 44.374 -14.378 1 59.55 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . J 2 -21.147 44.409 -17.027 1 58.86 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . J 2 -20.315 45.354 -17.459 1 58.52 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . J 2 -25.374 44.791 -15.607 1 57.38 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . J 2 -26.46 45.074 -16.492 1 57.44 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . J 2 -27.506 45.412 -15.738 1 58.01 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . J 2 -27.111 45.341 -14.345 1 57.61 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . J 2 -26.359 44.987 -18.03 1 57.64 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . J 2 -28.908 45.809 -16.234 1 59.48 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . J 2 -29.588 44.988 -17.041 1 60.81 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . J 2 -27.611 45.225 -11.962 1 56.7 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . J 2 -28.532 45.251 -10.847 1 57.24 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . J 2 -27.758 44.684 -9.651 1 57.03 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . J 2 -26.455 44.38 -10.165 1 56.51 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . J 2 -29.991 45.725 -10.819 1 55.85 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . J 2 -28.267 44.49 -8.211 1 56.82 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . J 2 -28.684 43.04 -8.006 1 56.8 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . J 2 -29.01 42.73 -6.556 1 56.67 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . J 2 -29.508 41.6 -6.32 1 58.1 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . J 2 -28.789 43.566 -5.638 1 54.65 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . J 2 -23.615 44.227 -11.012 1 55.71 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . J 2 -23.093 44.416 -13.776 1 57.82 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . J 2 -25.796 44.958 -14.305 1 57.17 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . J 2 -26.397 44.724 -11.514 1 56.6 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . J 2 -24.709 44.545 -12.625 1 55.69 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #