data_4EGP # _model_server_result.job_id yt2P88dMXo9baynROfvBcA _model_server_result.datetime_utc '2024-10-19 11:48:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4egp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":502}' # _entry.id 4EGP # _exptl.entry_id 4EGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'naphthalene-2-carboxylic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EGP _cell.length_a 143.545 _cell.length_b 172.21 _cell.length_c 106.258 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,M 1 1 B,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 359 A CYS 358 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 B SG CYS 359 B CYS 358 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'C11 H8 O2' _chem_comp.formula_weight 172.18 _chem_comp.id FIV _chem_comp.mon_nstd_flag . _chem_comp.name 'naphthalene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-naphthoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C11 FIV doub 83 n n O1 C11 FIV sing 84 n n C11 C7 FIV sing 85 n n C7 C5 FIV doub 86 n y C7 C8 FIV sing 87 n y C5 C2 FIV sing 88 n y C8 C3 FIV doub 89 n y C2 C6 FIV doub 90 n y C2 C1 FIV sing 91 n y C3 C1 FIV sing 92 n y C6 C10 FIV sing 93 n y C1 C4 FIV doub 94 n y C10 C9 FIV doub 95 n y C4 C9 FIV sing 96 n y O1 H1 FIV sing 97 n n C8 H2 FIV sing 98 n n C3 H3 FIV sing 99 n n C5 H4 FIV sing 100 n n C6 H5 FIV sing 101 n n C10 H6 FIV sing 102 n n C9 H7 FIV sing 103 n n C4 H8 FIV sing 104 n n # _atom_sites.entry_id 4EGP _atom_sites.fract_transf_matrix[1][1] 0.006966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 430 HEM HEM . D 3 FIV A 1 502 555 FIV FIV . E 3 FIV A 1 503 2555 FIV FIV . F 4 SO4 A 1 504 501 SO4 SO4 . G 4 SO4 A 1 505 502 SO4 SO4 . H 5 GOL A 1 506 601 GOL GOL . I 6 CL A 1 507 701 CL CL . J 2 HEM B 1 501 430 HEM HEM . K 3 FIV B 1 502 555 FIV FIV . L 4 SO4 B 1 503 501 SO4 SO4 . M 7 HOH A 1 601 2 HOH HOH . M 7 HOH A 2 602 3 HOH HOH . M 7 HOH A 3 603 5 HOH HOH . M 7 HOH A 4 604 6 HOH HOH . M 7 HOH A 5 605 7 HOH HOH . M 7 HOH A 6 606 8 HOH HOH . M 7 HOH A 7 607 12 HOH HOH . M 7 HOH A 8 608 13 HOH HOH . M 7 HOH A 9 609 14 HOH HOH . M 7 HOH A 10 610 17 HOH HOH . M 7 HOH A 11 611 18 HOH HOH . N 7 HOH B 1 601 1 HOH HOH . N 7 HOH B 2 602 4 HOH HOH . N 7 HOH B 3 603 9 HOH HOH . N 7 HOH B 4 604 10 HOH HOH . N 7 HOH B 5 605 11 HOH HOH . N 7 HOH B 6 606 15 HOH HOH . N 7 HOH B 7 607 16 HOH HOH . N 7 HOH B 8 608 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 FIV . . . K 3 -30.56 53.014 -7.768 1 58.81 ? O2 FIV 502 B 1 HETATM 2 C C11 FIV . . . K 3 -30.767 51.917 -8.339 1 57.39 ? C11 FIV 502 B 1 HETATM 3 O O1 FIV . . . K 3 -31.921 51.552 -8.658 1 56.07 ? O1 FIV 502 B 1 HETATM 4 C C7 FIV . . . K 3 -29.613 50.98 -8.568 1 57.22 ? C7 FIV 502 B 1 HETATM 5 C C8 FIV . . . K 3 -29.936 49.634 -8.681 1 58.19 ? C8 FIV 502 B 1 HETATM 6 C C3 FIV . . . K 3 -28.957 48.651 -8.865 1 57.99 ? C3 FIV 502 B 1 HETATM 7 C C5 FIV . . . K 3 -28.255 51.368 -8.629 1 56.2 ? C5 FIV 502 B 1 HETATM 8 C C2 FIV . . . K 3 -27.267 50.374 -8.824 1 55.86 ? C2 FIV 502 B 1 HETATM 9 C C6 FIV . . . K 3 -25.919 50.699 -8.881 1 54.58 ? C6 FIV 502 B 1 HETATM 10 C C10 FIV . . . K 3 -24.97 49.682 -9.057 1 54.89 ? C10 FIV 502 B 1 HETATM 11 C C9 FIV . . . K 3 -25.324 48.333 -9.185 1 54.8 ? C9 FIV 502 B 1 HETATM 12 C C4 FIV . . . K 3 -26.666 47.99 -9.109 1 55.54 ? C4 FIV 502 B 1 HETATM 13 C C1 FIV . . . K 3 -27.616 49.008 -8.933 1 56.72 ? C1 FIV 502 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #