data_4EGP
#
_model_server_result.job_id            NGbnpIoxNXGQpMSh_cnO1Q 
_model_server_result.datetime_utc      '2024-11-23 03:19:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4egp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":506}' 
#
_entry.id    4EGP 
#
_exptl.entry_id    4EGP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EGP 
_cell.length_a            143.545 
_cell.length_b            172.21 
_cell.length_c            106.258 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EGP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,M 1 1 
B,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 359 A CYS 358 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc2 B SG CYS 359 B CYS 358 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 151 n n 
C1 C2 GOL sing 152 n n 
C1 H11 GOL sing 153 n n 
C1 H12 GOL sing 154 n n 
O1 HO1 GOL sing 155 n n 
C2 O2 GOL sing 156 n n 
C2 C3 GOL sing 157 n n 
C2 H2 GOL sing 158 n n 
O2 HO2 GOL sing 159 n n 
C3 O3 GOL sing 160 n n 
C3 H31 GOL sing 161 n n 
C3 H32 GOL sing 162 n n 
O3 HO3 GOL sing 163 n n 
#
_atom_sites.entry_id                     4EGP 
_atom_sites.fract_transf_matrix[1][1]    0.006966 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 430 HEM HEM . 
D 3 FIV A 1 502 555 FIV FIV . 
E 3 FIV A 1 503 2555 FIV FIV . 
F 4 SO4 A 1 504 501 SO4 SO4 . 
G 4 SO4 A 1 505 502 SO4 SO4 . 
H 5 GOL A 1 506 601 GOL GOL . 
I 6 CL A 1 507 701 CL CL . 
J 2 HEM B 1 501 430 HEM HEM . 
K 3 FIV B 1 502 555 FIV FIV . 
L 4 SO4 B 1 503 501 SO4 SO4 . 
M 7 HOH A 1 601 2 HOH HOH . 
M 7 HOH A 2 602 3 HOH HOH . 
M 7 HOH A 3 603 5 HOH HOH . 
M 7 HOH A 4 604 6 HOH HOH . 
M 7 HOH A 5 605 7 HOH HOH . 
M 7 HOH A 6 606 8 HOH HOH . 
M 7 HOH A 7 607 12 HOH HOH . 
M 7 HOH A 8 608 13 HOH HOH . 
M 7 HOH A 9 609 14 HOH HOH . 
M 7 HOH A 10 610 17 HOH HOH . 
M 7 HOH A 11 611 18 HOH HOH . 
N 7 HOH B 1 601 1 HOH HOH . 
N 7 HOH B 2 602 4 HOH HOH . 
N 7 HOH B 3 603 9 HOH HOH . 
N 7 HOH B 4 604 10 HOH HOH . 
N 7 HOH B 5 605 11 HOH HOH . 
N 7 HOH B 6 606 15 HOH HOH . 
N 7 HOH B 7 607 16 HOH HOH . 
N 7 HOH B 8 608 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 5 -40.954 26.575 -13.072 1 59.58 ? C1 GOL 506 A 1 
HETATM 2 O O1 GOL . . . H 5 -40.759 26.009 -14.341 1 58.62 ? O1 GOL 506 A 1 
HETATM 3 C C2 GOL . . . H 5 -39.657 27.076 -12.429 1 61.27 ? C2 GOL 506 A 1 
HETATM 4 O O2 GOL . . . H 5 -39.354 28.414 -12.768 1 61.22 ? O2 GOL 506 A 1 
HETATM 5 C C3 GOL . . . H 5 -38.456 26.184 -12.694 1 62.22 ? C3 GOL 506 A 1 
HETATM 6 O O3 GOL . . . H 5 -37.323 26.843 -12.161 1 65.24 ? O3 GOL 506 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#